3-180653067-ATAAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180653067
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180653062
    reference: chr 3
allele count: 4
allele frequency: 4.298209795620125e-5
allele num: 93062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.210+49_210+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.198+49_198+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-58+49_-58+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.213+49_213+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.206+49_206+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.159+49_159+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-58+49_-58+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-58+49_-58+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-58+49_-58+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.198+49_198+53delTAAAT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.299+1894_299+1898delTAAAT
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12792
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ATAAAT
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-180665611-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665610
    reference: chr 3
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-38delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-38delT
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: CT
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-180665614-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665614
    reference: chr 3
allele count: 317
allele frequency: 2.632496802803568e-3
allele num: 120418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-39T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-39T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 6
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-180665621-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665621
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665621
    reference: chr 3
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-32G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-32G>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-180665624-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665624
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665624
    reference: chr 3
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-29T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-29T>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

3-180665628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665628
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665628
    reference: chr 3
allele count: 3
allele frequency: 2.48562480322137e-5
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-25T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-25T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-180665635-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665636
    reference: chr 3
allele count: 27
allele frequency: 2.312950811246081e-4
allele num: 116734
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-9dupT
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-180665635-A-ATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665638
    reference: chr 3
allele count: 1
allele frequency: 8.566484486096596e-6
allele num: 116734
alternate allele: ATTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-11_52-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-11_199-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-11_199-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-11_211-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-11_300-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-11_214-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-11_160-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-11_207-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-11_-57-9dupTTT
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-180665635-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665635
    reference: chr 3
allele count: 2
allele frequency: 1.713296897219319e-5
allele num: 116734
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31475
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6564
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.09052137095528e-5
  allele num: 64714
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10192
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11296
  num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-180665635-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665634
    reference: chr 3
allele count: 49
allele frequency: 4.197577398187332e-4
allele num: 116734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-9delT
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-9delT
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: AT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

3-180665642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665642
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665642
    reference: chr 3
allele count: 13
allele frequency: 1.07328027475975e-4
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-11T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-11T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-180665644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665644
    reference: chr 3
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-9T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

3-180665645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665645
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665645
    reference: chr 3
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-8C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-8C>T
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.199-8C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-180665648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665648
    reference: chr 3
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.300-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.211-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.199-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.160-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.214-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.207-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.52-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-57-5C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.199-5C>T
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.199-5C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-180665661-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665661
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665661
    reference: chr 3
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.60A>G
  hgvsp: ENST00000491062.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.308A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.215A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.219A>G
  hgvsp: ENST00000484042.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.207A>G
  hgvsp: ENST00000357559.4:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.168A>G
  hgvsp: ENST00000480918.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.222A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.207A>G
  hgvsp: ENST00000445140.2:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-49A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser69Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-180665682-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665682
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665682
    reference: chr 3
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.189A>G
  hgvsp: ENST00000480918.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.240A>G
  hgvsp: ENST00000484042.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.329A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.236A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.81A>G
  hgvsp: ENST00000491062.1:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.228A>G
  hgvsp: ENST00000445140.2:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.228A>G
  hgvsp: ENST00000357559.4:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.243A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro76Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

3-180665688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665688
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665688
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.335G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.242G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.234G>A
  hgvsp: ENST00000357559.4:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.87G>A
  hgvsp: ENST00000491062.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.234G>A
  hgvsp: ENST00000445140.2:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.246G>A
  hgvsp: ENST00000484042.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.195G>A
  hgvsp: ENST00000480918.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.249G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly78Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

3-180665735-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665735
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665735
    reference: chr 3
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.296T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+11T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+11T>G
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

3-180665737-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665737
    reference: chr 3
allele count: 4
allele frequency: 3.301528607745386e-5
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.298C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+13C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+13C>G
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-180665737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665737
    reference: chr 3
allele count: 9
allele frequency: 7.428439367427118e-5
allele num: 121156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.298C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+13C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+13C>T
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-180665750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665750
    reference: chr 3
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.311T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+26T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

3-180665752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665752
    reference: chr 3
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.313A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+28A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-180665762-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665762
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665762
    reference: chr 3
allele count: 9
allele frequency: 7.439492130670547e-5
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.323A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+38A>C
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-180665765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665765
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665765
    reference: chr 3
allele count: 4
allele frequency: 3.30742516950554e-5
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.326G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+41G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+41G>C
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-180665770-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180665770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180665769
    reference: chr 3
allele count: 1
allele frequency: 8.276227364518158e-6
allele num: 120828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000479176
  gene symbol: FXR1
  hgvsc: ENST00000479176.1:n.333delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.282+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.270+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.371+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.270+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.278+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.231+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.123+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.15+48delC
  variant of: http://identifiers.org/hgnc/4023
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AC
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

3-180666091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666091
    reference: chr 3
allele count: 3
allele frequency: 2.925174047855847e-5
allele num: 102558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-44T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-44T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11887
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

3-180666096-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666096
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666096
    reference: chr 3
allele count: 1
allele frequency: 9.748298921838139e-6
allele num: 102582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-39G>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-39G>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-180666102-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666102
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666102
    reference: chr 3
allele count: 10
allele frequency: 9.625750808563068e-5
allele num: 103888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-33A>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-33A>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

3-180666102-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666102
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666102
    reference: chr 3
allele count: 2
allele frequency: 1.925150161712613e-5
allele num: 103888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-33A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-33A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

3-180666106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666106
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666106
    reference: chr 3
allele count: 1
allele frequency: 9.56150918861033e-6
allele num: 104586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-29G>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11620
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-180666112-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666112
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666112
    reference: chr 3
allele count: 3
allele frequency: 2.81928390188892e-5
allele num: 106410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-23T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-23T>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-180666115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666115
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666115
    reference: chr 3
allele count: 2
allele frequency: 1.858079860272394e-5
allele num: 107638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-20A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-180666122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666122
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666122
    reference: chr 3
allele count: 7
allele frequency: 6.319856990664668e-5
allele num: 110762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-13T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-13T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35359
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

3-180666131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666131
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666131
    reference: chr 3
allele count: 1
allele frequency: 8.685682520932494e-6
allele num: 115132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.232-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.271-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.372-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.271-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.283-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.279-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.124-4T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.16-4T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.271-4T>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-180666136-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666136
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666136
    reference: chr 3
allele count: 1
allele frequency: 8.573388203017833e-6
allele num: 116640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.17T>A
  hgvsp: ENSP00000307633.7:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.17T>A
  hgvsp: ENSP00000420515.1:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.233T>A
  hgvsp: ENSP00000418097.1:p.Phe78Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.17T>A
  hgvsp: ENSP00000418724.1:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.125T>A
  hgvsp: ENSP00000420643.1:p.Phe42Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.272T>A
  hgvsp: ENSP00000350170.3:p.Phe91Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.17T>A
  hgvsp: ENSP00000419793.1:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.284T>A
  hgvsp: ENSP00000417513.1:p.Phe95Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.272T>A
  hgvsp: ENSP00000388828.2:p.Phe91Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.17T>A
  hgvsp: ENSP00000417125.1:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.17T>A
  hgvsp: ENSP00000419933.1:p.Phe6Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.373T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.280T>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe91Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-180666152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666152
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666152
    reference: chr 3
allele count: 1
allele frequency: 8.364281173675934e-6
allele num: 119556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.288T>C
  hgvsp: ENST00000357559.4:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.33T>C
  hgvsp: ENST00000305586.7:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.33T>C
  hgvsp: ENST00000468861.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.288T>C
  hgvsp: ENST00000445140.2:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.33T>C
  hgvsp: ENST00000465551.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.33T>C
  hgvsp: ENST00000469882.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.141T>C
  hgvsp: ENST00000491062.1:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.33T>C
  hgvsp: ENST00000484958.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.296T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.249T>C
  hgvsp: ENST00000480918.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.300T>C
  hgvsp: ENST00000484042.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.389T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.33T>C
  hgvsp: ENST00000484790.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr96Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-180666156-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666156
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666156
    reference: chr 3
allele count: 1
allele frequency: 8.34640937468701e-6
allele num: 119812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.37G>T
  hgvsp: ENSP00000419933.1:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.292G>T
  hgvsp: ENSP00000388828.2:p.Ala98Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.37G>T
  hgvsp: ENSP00000420515.1:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.393G>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.253G>T
  hgvsp: ENSP00000418097.1:p.Ala85Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.145G>T
  hgvsp: ENSP00000420643.1:p.Ala49Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.37G>T
  hgvsp: ENSP00000307633.7:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.37G>T
  hgvsp: ENSP00000419793.1:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.304G>T
  hgvsp: ENSP00000417513.1:p.Ala102Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.37G>T
  hgvsp: ENSP00000417125.1:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.300G>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.292G>T
  hgvsp: ENSP00000350170.3:p.Ala98Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.37G>T
  hgvsp: ENSP00000418724.1:p.Ala13Ser
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala98Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-180666164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666164
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666164
    reference: chr 3
allele count: 2
allele frequency: 1.664253499092982e-5
allele num: 120174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.308C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.45C>T
  hgvsp: ENST00000484958.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.45C>T
  hgvsp: ENST00000469882.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.261C>T
  hgvsp: ENST00000480918.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.45C>T
  hgvsp: ENST00000484790.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.45C>T
  hgvsp: ENST00000465551.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.401C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.300C>T
  hgvsp: ENST00000357559.4:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.45C>T
  hgvsp: ENST00000305586.7:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.300C>T
  hgvsp: ENST00000445140.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.153C>T
  hgvsp: ENST00000491062.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.312C>T
  hgvsp: ENST00000484042.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.45C>T
  hgvsp: ENST00000468861.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp100Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-180666165-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666165
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666165
    reference: chr 3
allele count: 1
allele frequency: 8.31849867735871e-6
allele num: 120214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.46G>T
  hgvsp: ENSP00000417125.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.301G>T
  hgvsp: ENSP00000350170.3:p.Ala101Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.309G>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.154G>T
  hgvsp: ENSP00000420643.1:p.Ala52Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.301G>T
  hgvsp: ENSP00000388828.2:p.Ala101Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.46G>T
  hgvsp: ENSP00000418724.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.46G>T
  hgvsp: ENSP00000419933.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.46G>T
  hgvsp: ENSP00000307633.7:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.402G>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.46G>T
  hgvsp: ENSP00000420515.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.46G>T
  hgvsp: ENSP00000419793.1:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.262G>T
  hgvsp: ENSP00000418097.1:p.Ala88Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.313G>T
  hgvsp: ENSP00000417513.1:p.Ala105Ser
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala101Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-180666166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666166
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666166
    reference: chr 3
allele count: 2
allele frequency: 1.663035705376594e-5
allele num: 120262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.47C>T
  hgvsp: ENSP00000419933.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.314C>T
  hgvsp: ENSP00000417513.1:p.Ala105Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.263C>T
  hgvsp: ENSP00000418097.1:p.Ala88Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.310C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.47C>T
  hgvsp: ENSP00000418724.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.302C>T
  hgvsp: ENSP00000388828.2:p.Ala101Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.47C>T
  hgvsp: ENSP00000420515.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.155C>T
  hgvsp: ENSP00000420643.1:p.Ala52Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.47C>T
  hgvsp: ENSP00000307633.7:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.47C>T
  hgvsp: ENSP00000419793.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.403C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.47C>T
  hgvsp: ENSP00000417125.1:p.Ala16Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.302C>T
  hgvsp: ENSP00000350170.3:p.Ala101Val
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala101Val
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

3-180666168-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666168
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666168
    reference: chr 3
allele count: 2
allele frequency: 1.662538030557449e-5
allele num: 120298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.49A>G
  hgvsp: ENSP00000420515.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.316A>G
  hgvsp: ENSP00000417513.1:p.Thr106Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.49A>G
  hgvsp: ENSP00000417125.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.312A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.49A>G
  hgvsp: ENSP00000307633.7:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.265A>G
  hgvsp: ENSP00000418097.1:p.Thr89Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.304A>G
  hgvsp: ENSP00000388828.2:p.Thr102Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.157A>G
  hgvsp: ENSP00000420643.1:p.Thr53Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.49A>G
  hgvsp: ENSP00000419793.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.49A>G
  hgvsp: ENSP00000418724.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.304A>G
  hgvsp: ENSP00000350170.3:p.Thr102Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.49A>G
  hgvsp: ENSP00000419933.1:p.Thr17Ala
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.405A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr102Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-180666190-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666190
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666190
    reference: chr 3
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.71T>A
  hgvsp: ENSP00000307633.7:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.326T>A
  hgvsp: ENSP00000350170.3:p.Phe109Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.71T>A
  hgvsp: ENSP00000419933.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.287T>A
  hgvsp: ENSP00000418097.1:p.Phe96Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.71T>A
  hgvsp: ENSP00000417125.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.326T>A
  hgvsp: ENSP00000388828.2:p.Phe109Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.179T>A
  hgvsp: ENSP00000420643.1:p.Phe60Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.71T>A
  hgvsp: ENSP00000418724.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.334T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.338T>A
  hgvsp: ENSP00000417513.1:p.Phe113Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.71T>A
  hgvsp: ENSP00000420515.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.71T>A
  hgvsp: ENSP00000419793.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.427T>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe109Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

3-180666200-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666200
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666200
    reference: chr 3
allele count: 4
allele frequency: 3.314990386527879e-5
allele num: 120664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.336T>G
  hgvsp: ENST00000445140.2:c.336T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.437T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.189T>G
  hgvsp: ENST00000491062.1:c.189T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.81T>G
  hgvsp: ENST00000305586.7:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.81T>G
  hgvsp: ENST00000484958.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.81T>G
  hgvsp: ENST00000465551.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.336T>G
  hgvsp: ENST00000357559.4:c.336T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.348T>G
  hgvsp: ENST00000484042.1:c.348T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.297T>G
  hgvsp: ENST00000480918.1:c.297T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.344T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.81T>G
  hgvsp: ENST00000484790.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.81T>G
  hgvsp: ENST00000469882.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.81T>G
  hgvsp: ENST00000468861.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu112Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-180666217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666217
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666217
    reference: chr 3
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.98A>G
  hgvsp: ENSP00000307633.7:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.361A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.353A>G
  hgvsp: ENSP00000350170.3:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.454A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.314A>G
  hgvsp: ENSP00000418097.1:p.Asn105Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.353A>G
  hgvsp: ENSP00000388828.2:p.Asn118Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.98A>G
  hgvsp: ENSP00000419793.1:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.98A>G
  hgvsp: ENSP00000419933.1:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.98A>G
  hgvsp: ENSP00000418724.1:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.206A>G
  hgvsp: ENSP00000420643.1:p.Asn69Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.98A>G
  hgvsp: ENSP00000420515.1:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.365A>G
  hgvsp: ENSP00000417513.1:p.Asn122Ser
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.98A>G
  hgvsp: ENSP00000417125.1:p.Asn33Ser
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn118Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-180666224-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666224
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666224
    reference: chr 3
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.105T>C
  hgvsp: ENST00000484958.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.105T>C
  hgvsp: ENST00000465551.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.321T>C
  hgvsp: ENST00000480918.1:c.321T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.105T>C
  hgvsp: ENST00000469882.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.372T>C
  hgvsp: ENST00000484042.1:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.461T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.105T>C
  hgvsp: ENST00000305586.7:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.213T>C
  hgvsp: ENST00000491062.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.360T>C
  hgvsp: ENST00000445140.2:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.360T>C
  hgvsp: ENST00000357559.4:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.368T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.105T>C
  hgvsp: ENST00000468861.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.105T>C
  hgvsp: ENST00000484790.1:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr120Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/3-180666227-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666227
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666226
    reference: chr 3
allele count: 24
allele frequency: 1.997835678015483e-4
allele num: 120130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.379delA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.371delA
  hgvsp: ENSP00000388828.2:p.Asn124IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.116delA
  hgvsp: ENSP00000307633.7:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.116delA
  hgvsp: ENSP00000419933.1:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.116delA
  hgvsp: ENSP00000417125.1:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.116delA
  hgvsp: ENSP00000419793.1:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.383delA
  hgvsp: ENSP00000417513.1:p.Asn128IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.371delA
  hgvsp: ENSP00000350170.3:p.Asn124IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.224delA
  hgvsp: ENSP00000420643.1:p.Asn75IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.332delA
  hgvsp: ENSP00000418097.1:p.Asn111IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.116delA
  hgvsp: ENSP00000420515.1:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.472delA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.116delA
  hgvsp: ENSP00000418724.1:p.Asn39IlefsTer14
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39624
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: p.Asn124IlefsTer14
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: CA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-180666251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666251
    reference: chr 3
allele count: 8
allele frequency: 6.656903208627346e-5
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.132C>T
  hgvsp: ENST00000468861.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.348C>T
  hgvsp: ENST00000480918.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.132C>T
  hgvsp: ENST00000469882.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.387C>T
  hgvsp: ENST00000445140.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.387C>T
  hgvsp: ENST00000357559.4:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.399C>T
  hgvsp: ENST00000484042.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.240C>T
  hgvsp: ENST00000491062.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.132C>T
  hgvsp: ENST00000484790.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.132C>T
  hgvsp: ENST00000305586.7:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.132C>T
  hgvsp: ENST00000484958.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.395C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.132C>T
  hgvsp: ENST00000465551.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.488C>T
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys129Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

3-180666261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666261
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666261
    reference: chr 3
allele count: 1
allele frequency: 8.344041519950603e-6
allele num: 119846
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.397G>A
  hgvsp: ENSP00000350170.3:p.Val133Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.250G>A
  hgvsp: ENSP00000420643.1:p.Val84Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.142G>A
  hgvsp: ENSP00000419933.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.142G>A
  hgvsp: ENSP00000418724.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.498G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.397G>A
  hgvsp: ENSP00000388828.2:p.Val133Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.358G>A
  hgvsp: ENSP00000418097.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.142G>A
  hgvsp: ENSP00000417125.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.142G>A
  hgvsp: ENSP00000419793.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.409G>A
  hgvsp: ENSP00000417513.1:p.Val137Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.405G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.142G>A
  hgvsp: ENSP00000420515.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.142G>A
  hgvsp: ENSP00000307633.7:p.Val48Ile
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val133Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-180666273-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666273
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666273
    reference: chr 3
allele count: 1
allele frequency: 8.392500461587526e-6
allele num: 119154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.370T>A
  hgvsp: ENSP00000418097.1:p.Leu124Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.409T>A
  hgvsp: ENSP00000388828.2:p.Leu137Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.262T>A
  hgvsp: ENSP00000420643.1:p.Leu88Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.154T>A
  hgvsp: ENSP00000419933.1:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.154T>A
  hgvsp: ENSP00000418724.1:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.154T>A
  hgvsp: ENSP00000420515.1:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.154T>A
  hgvsp: ENSP00000419793.1:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.421T>A
  hgvsp: ENSP00000417513.1:p.Leu141Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.154T>A
  hgvsp: ENSP00000417125.1:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.154T>A
  hgvsp: ENSP00000307633.7:p.Leu52Met
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.510T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.417T>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.409T>A
  hgvsp: ENSP00000350170.3:p.Leu137Met
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu137Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-180666283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666283
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666283
    reference: chr 3
allele count: 1
allele frequency: 8.477306251165629e-6
allele num: 117962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380C>T
  hgvsp: ENSP00000418097.1:p.Ala127Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164C>T
  hgvsp: ENSP00000420515.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164C>T
  hgvsp: ENSP00000419793.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164C>T
  hgvsp: ENSP00000307633.7:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272C>T
  hgvsp: ENSP00000420643.1:p.Ala91Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431C>T
  hgvsp: ENSP00000417513.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419C>T
  hgvsp: ENSP00000350170.3:p.Ala140Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419C>T
  hgvsp: ENSP00000388828.2:p.Ala140Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164C>T
  hgvsp: ENSP00000418724.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164C>T
  hgvsp: ENSP00000419933.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164C>T
  hgvsp: ENSP00000417125.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala140Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

3-180666296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666296
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666296
    reference: chr 3
allele count: 7
allele frequency: 5.984645110544945e-5
allele num: 116966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+13A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-180666301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666301
    reference: chr 3
allele count: 2
allele frequency: 1.715324710967786e-5
allele num: 116596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+18C>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+18C>T
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-180666303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666303
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666303
    reference: chr 3
allele count: 3
allele frequency: 2.572898799313894e-5
allele num: 116600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+20A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-180666305-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666305
    reference: chr 3
allele count: 4
allele frequency: 3.436544211141276e-5
allele num: 116396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+22T>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+22T>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-180666311-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666311
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666311
    reference: chr 3
allele count: 1
allele frequency: 8.614006374364718e-6
allele num: 116090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+28G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+28G>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-180666320-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666320
    reference: chr 3
allele count: 2
allele frequency: 1.735990556211374e-5
allele num: 115208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+37A>T
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+37A>T
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-180666322-TAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666322
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666319
    reference: chr 3
allele count: 10
allele frequency: 8.683118281437229e-5
allele num: 115166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+44_419+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+44_380+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+44_520+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+44_272+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+44_431+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+44_427+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+44_419+46delAGA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+44_164+46delAGA
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30555
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: TAAG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

3-180666325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666325
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666325
    reference: chr 3
allele count: 1
allele frequency: 8.704583833846904e-6
allele num: 114882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+42G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+42G>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-180666334-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666334
    reference: chr 3
allele count: 1
allele frequency: 8.771006560712907e-6
allele num: 114012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.427+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.431+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.520+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.380+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.419+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.272+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.164+51T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.419+51T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-180666475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666475
    reference: chr 3
allele count: 10
allele frequency: 8.510348583877996e-5
allele num: 117504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-34T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-34T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-180666478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666478
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666478
    reference: chr 3
allele count: 1
allele frequency: 8.509189925119129e-6
allele num: 117520
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-31A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-31A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-180666490-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666488
    reference: chr 3
allele count: 1495
allele frequency: 1.262455666272589e-2
allele num: 118420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-17_381-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-17_521-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-17_165-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-17_428-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-17_420-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-17_420-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-17_273-16delAA
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-17_432-16delAA
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 5.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 6.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 2.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 4.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 13568
  bin: 2.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
num of homozygotes: 25
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: TAA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-180666491-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666491
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666491
    reference: chr 3
allele count: 5
allele frequency: 4.32660690180333e-5
allele num: 115564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-18A>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-18A>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13629
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

3-180666504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666504
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666504
    reference: chr 3
allele count: 5
allele frequency: 4.189710072063013e-5
allele num: 119340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-5T>C
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-5T>C
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.420-5T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

3-180666505-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666505
    reference: chr 3
allele count: 1
allele frequency: 8.377594960038872e-6
allele num: 119366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381-4C>G
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165-4C>G
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.420-4C>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

3-180666509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 180666509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 180666509
    reference: chr 3
allele count: 1
allele frequency: 8.359666282122017e-6
allele num: 119622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000388828
  ensembl transcript: ENST00000445140
  gene symbol: FXR1
  hgvsc: ENST00000445140.2:c.420G>A
  hgvsp: ENST00000445140.2:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419793
  ensembl transcript: ENST00000469882
  gene symbol: FXR1
  hgvsc: ENST00000469882.1:c.165G>A
  hgvsp: ENST00000469882.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418097
  ensembl transcript: ENST00000480918
  gene symbol: FXR1
  hgvsc: ENST00000480918.1:c.381G>A
  hgvsp: ENST00000480918.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420643
  ensembl transcript: ENST00000491062
  gene symbol: FXR1
  hgvsc: ENST00000491062.1:c.273G>A
  hgvsp: ENST00000491062.1:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000307633
  ensembl transcript: ENST00000305586
  gene symbol: FXR1
  hgvsc: ENST00000305586.7:c.165G>A
  hgvsp: ENST00000305586.7:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417125
  ensembl transcript: ENST00000484790
  gene symbol: FXR1
  hgvsc: ENST00000484790.1:c.165G>A
  hgvsp: ENST00000484790.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000475315
  gene symbol: FXR1
  hgvsc: ENST00000475315.1:n.521G>A
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000420515
  ensembl transcript: ENST00000468861
  gene symbol: FXR1
  hgvsc: ENST00000468861.1:c.165G>A
  hgvsp: ENST00000468861.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000417513
  ensembl transcript: ENST00000484042
  gene symbol: FXR1
  hgvsc: ENST00000484042.1:c.432G>A
  hgvsp: ENST00000484042.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000418724
  ensembl transcript: ENST00000465551
  gene symbol: FXR1
  hgvsc: ENST00000465551.1:c.165G>A
  hgvsp: ENST00000465551.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000419933
  ensembl transcript: ENST00000484958
  gene symbol: FXR1
  hgvsc: ENST00000484958.1:c.165G>A
  hgvsp: ENST00000484958.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl protein: ENSP00000350170
  ensembl transcript: ENST00000357559
  gene symbol: FXR1
  hgvsc: ENST00000357559.4:c.420G>A
  hgvsp: ENST00000357559.4:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4023
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000114416
  ensembl transcript: ENST00000472339
  gene symbol: FXR1
  hgvsc: ENST00000472339.1:n.428G>A
  variant of: http://identifiers.org/hgnc/4023
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.420G>A
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 734
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 414
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 158
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14061
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3790
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7442
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.914602156805596e-4
allele num: 13724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.542e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.119507e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

QD
type: SiteQuality
SIO_000300: 1.094e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeDepth
all individuals: 758
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1077
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6323
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1623
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2112
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3034
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 3.274e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.966e0

DP
type: SiteQuality
SIO_000300: 2.959564e6

GenotypeDepth
all individuals: 4144
bin: 9.75e1
variant carriers: 50

GenotypeDepth
all individuals: 6561
bin: 3.75e1
variant carriers: 17

GenotypeDepth
all individuals: 637
bin: 8.25e1
variant carriers: 12

GenotypeDepth
all individuals: 3858
bin: 5.75e1
variant carriers: 32

GenotypeDepth
all individuals: 1079
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33437
bin: 9.75e1
variant carriers: 309

GenotypeQuality
all individuals: 736
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 295
allele frequency: 2.844744455159113e-2
allele num: 10370
num of homozygotes: 6

Latino
type: Population
allele count: 20
allele frequency: 1.730702665282105e-3
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.218905472636816e-5
allele num: 16080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

DP
type: SiteQuality
SIO_000300: 2.965537e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e0

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.616e1

GenotypeDepth
all individuals: 937
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4136
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5278
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3848
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33360
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.974231e6

VQSLOD
type: SiteQuality
SIO_000300: -7.45e-2

BaseQRankSum
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SIO_000300: -2.168e0

FS
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SIO_000300: 1.512e0

MQ
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SIO_000300: 5.915e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.218e0

ReadPosRankSum
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SIO_000300: 2.19e0

MQRankSum
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BaseQRankSum
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SIO_000300: -8.110000000000001e-1

FS
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SIO_000300: 5.395e0

QD
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SIO_000300: 1.539e1

InbreedingCoeff
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SIO_000300: 5.6e-3

MQ
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SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

DP
type: SiteQuality
SIO_000300: 2.978355e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.480278422273782e-4
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.35e0

QD
type: SiteQuality
SIO_000300: 1.705e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.98368e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.159459828127131e-3
allele num: 14662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.54526068547764e-4
allele num: 64714
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 2.176e0

DP
type: SiteQuality
SIO_000300: 3.126223e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54526068547764e-5
allele num: 64714
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 3.126223e6

ReadPosRankSum
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SIO_000300: 9.1e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.27e-1

InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 3.126223e6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 11

African
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allele count: 2
allele frequency: 1.96232339089482e-4
allele num: 10192
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.770538243626062e-4
allele num: 11296
num of homozygotes: 0

European (Non-Finnish)
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allele count: 21
allele frequency: 3.245047439503044e-4
allele num: 64714
num of homozygotes: 0

South Asian
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allele count: 18
allele frequency: 1.227663347428727e-3
allele num: 14662
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.55534486845224e-4
allele num: 8438
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.046922608165753e-4
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.651701252289859e-4
allele num: 66598
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East Asian
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allele frequency: 2.312138728323699e-4
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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VQSLOD
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QD
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FS
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BaseQRankSum
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SIO_000300: 4.34e0

ReadPosRankSum
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SIO_000300: 7.91e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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FS
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DP
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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QD
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SIO_000300: 2.23e0

MQRankSum
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -3.678e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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DP
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FS
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VQSLOD
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BaseQRankSum
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SIO_000300: -3.063e0

ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16494
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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South Asian
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African
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European (Non-Finnish)
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
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allele num: 11576
num of homozygotes: 0

African
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South Asian
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11576
num of homozygotes: 0

South Asian
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Other
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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QD
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MQ
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003273568189326e-5
allele num: 66594
num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.059322033898305e-3
allele num: 6608
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East Asian
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Latino
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num of homozygotes: 0

South Asian
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Other
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.353057910878586e-4
allele num: 66516
num of homozygotes: 0

Latino
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African
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European (Finnish)
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South Asian
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Other
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.014675808973896e-5
allele num: 66504
num of homozygotes: 0

MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 1.504347564461293e-5
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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MQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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DP
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 10
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allele num: 56274
num of homozygotes: 0

European (Finnish)
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East Asian
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Latino
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Other
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African
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South Asian
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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South Asian
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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South Asian
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European (Finnish)
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.315649867374005e-4
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num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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African
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European (Non-Finnish)
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MQ
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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Other
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East Asian
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African
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European (Non-Finnish)
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ClippingRankSum
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DP
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QD
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
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Latino
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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ReadPosRankSum
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QD
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MQ
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DP
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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African
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Latino
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Other
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele num: 8602
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10014
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Other
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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African
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South Asian
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MQ
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FS
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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MQ
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DP
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.988014382740711e-5
allele num: 10012
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.0e-4

ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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SIO_000300: 1.510326e6

FS
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: 6.46e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.441e0

VQSLOD
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SIO_000300: 3.45e-1

DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.265518803806072e-4
allele num: 66210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 4.882216526302942e-4
allele num: 16386
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
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SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.21e-1

VQSLOD
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DP
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SIO_000300: 1.542071e6

BaseQRankSum
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SIO_000300: -1.042e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.064281382656155e-4
allele num: 9894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.604e0

FS
type: SiteQuality
SIO_000300: 4.104e0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 1.508724e6

VQSLOD
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SIO_000300: 1.67e0

QD
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SIO_000300: 1.059e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

European (Finnish)
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Other
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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QD
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VQSLOD
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ClippingRankSum
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MQ
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SIO_000300: 5.963e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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Other
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European (Finnish)
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DP
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.519754857217368e-5
allele num: 15338
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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allele count: 0
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European (Finnish)
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Other
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Latino
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535768037595602e-5
allele num: 65114
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.082032063293775e-4
allele num: 9606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.494670627293377e-4
allele num: 11446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
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SIO_000300: -1.79e-1

ReadPosRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQRankSum
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SIO_000300: -4.76e-1

BaseQRankSum
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SIO_000300: 2.65e0

VQSLOD
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SIO_000300: -5.52e-2

DP
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SIO_000300: 1.443699e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.748251748251748e-4
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
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DP
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QD
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ClippingRankSum
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SIO_000300: 4.6e-1

FS
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SIO_000300: 6.936e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -9.92e-1

VQSLOD
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SIO_000300: 2.06e-1

BaseQRankSum
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SIO_000300: -2.08e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.077301821762679e-5
allele num: 64992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.835269993164729e-5
allele num: 14630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.666e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
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SIO_000300: -8.77e-1

BaseQRankSum
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SIO_000300: 3.26e0

QD
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SIO_000300: 1.455e1

VQSLOD
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SIO_000300: 1.23e0

MQRankSum
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SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.432437e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14528
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080809636772544e-5
allele num: 64918
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
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BaseQRankSum
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SIO_000300: 5.43e-1

DP
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SIO_000300: 1.425319e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

InbreedingCoeff
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SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 9.289e0

QD
type: SiteQuality
SIO_000300: 1.233e1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.54320987654321e-5
allele num: 64800
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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QD
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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SIO_000300: 1.418e0

InbreedingCoeff
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SIO_000300: 2.1e-3

DP
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ClippingRankSum
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SIO_000300: 1.77e-1

MQRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 2
allele frequency: 1.754385964912281e-4
allele num: 11400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
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FS
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.293838862559242e-4
allele num: 8440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.646984107314353e-5
allele num: 64558
num of homozygotes: 0

South Asian
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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SIO_000300: 1.748e0

DP
type: SiteQuality
SIO_000300: 1.386863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

MQ
type: SiteQuality
SIO_000300: 5.645e1

GenotypeDepth
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189343482397717e-4
allele num: 8408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 2.515e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.645e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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bin: 4.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559478510386127e-5
allele num: 64124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.817e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.389191e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeDepth
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 1990
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.661694192860948e-4
allele num: 15016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.05698214722426e-5
allele num: 65424
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

DP
type: SiteQuality
SIO_000300: 2.139205e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.334e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeDepth
all individuals: 1564
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1995
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 255
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1937
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5516
bin: 6.75e1
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GenotypeQuality
all individuals: 493
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037129226301597e-4
allele num: 9642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65426
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

FS
type: SiteQuality
SIO_000300: 3.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e0

MQ
type: SiteQuality
SIO_000300: 5.783e1

DP
type: SiteQuality
SIO_000300: 2.147201e6

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeDepth
all individuals: 8937
bin: 3.25e1
variant carriers: 80

GenotypeDepth
all individuals: 3119
bin: 4.75e1
variant carriers: 100

GenotypeDepth
all individuals: 1748
bin: 9.75e1
variant carriers: 259

GenotypeQuality
all individuals: 1456
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2604
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 470
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variant carriers: 2

GenotypeQuality
all individuals: 3717
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variant carriers: 2

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 1

GenotypeQuality
all individuals: 20146
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1615
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variant carriers: 1

GenotypeQuality
all individuals: 17355
bin: 9.75e1
variant carriers: 1462

European (Non-Finnish)
type: Population
allele count: 580
allele frequency: 8.822903039337977e-3
allele num: 65738
num of homozygotes: 1

South Asian
type: Population
allele count: 34
allele frequency: 2.205500778412039e-3
allele num: 15416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 85
allele frequency: 1.288269172476508e-2
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 1.580135440180587e-2
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 61
allele frequency: 5.315440920181247e-3
allele num: 11476
num of homozygotes: 0

African
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allele count: 721
allele frequency: 7.420749279538905e-2
allele num: 9716
num of homozygotes: 24

VQSLOD
type: SiteQuality
SIO_000300: 6.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.867e1

BaseQRankSum
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SIO_000300: 2.88e-1

MQRankSum
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SIO_000300: 9.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

QD
type: SiteQuality
SIO_000300: 1.904e1

DP
type: SiteQuality
SIO_000300: 2.208679e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 3224
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15380
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759943681802182e-4
allele num: 11364
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.399232245681382e-4
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.815e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -2.47e-1

VQSLOD
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SIO_000300: -1.701e0

BaseQRankSum
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SIO_000300: 4.35e0

DP
type: SiteQuality
SIO_000300: 2.111939e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 1007
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3314
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GenotypeQuality
all individuals: 2444
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.512878502324412e-4
allele num: 15918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 3.583e0

VQSLOD
type: SiteQuality
SIO_000300: -1.913e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 2.192184e6

GenotypeDepth
all individuals: 547
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14840
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 674
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1057
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 382
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 2.19342e6

VQSLOD
type: SiteQuality
SIO_000300: -1.239e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 5.658e1

GenotypeDepth
all individuals: 6201
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12523
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15085
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 226
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 381
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1996
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0