2-85787896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787896
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787896
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+42G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+42G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+613G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+613G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+613G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+42G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+613G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+613G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19627
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

2-85787899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787899
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787899
    reference: chr 2
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+610G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+610G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+39G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+39G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+39G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+610G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+610G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+610G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54446
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

2-85787900-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787900
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787900
    reference: chr 2
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+38A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+609A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+609A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+609A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+38A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+609A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+38A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+609A>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54445
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-85787906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787906
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787906
    reference: chr 2
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+32G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+603G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+603G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+603G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+603G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+32G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+603G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+32G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19627
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/2-85787923-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787923
    reference: chr 2
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+15T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+586T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+15T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+15T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+586T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+586T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+586T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+586T>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19627
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-85787924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787924
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787924
    reference: chr 2
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+14A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+585A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+14A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+585A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+585A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+585A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+585A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+14A>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-85787937-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787937
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787937
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.333+1G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+572G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+572G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.214+1G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.214+1G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+572G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+572G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+572G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: c.214+1G>T
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/2-85787949-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787949
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.322G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+560G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.203G>T
  hgvsp: ENSP00000389426.1:p.Arg68Leu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+560G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+560G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+560G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.203G>T
  hgvsp: ENSP00000233838.3:p.Arg68Leu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+560G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg68Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

2-85787950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787950
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787950
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+559C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+559C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+559C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+559C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.321C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.202C>T
  hgvsp: ENSP00000389426.1:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.202C>T
  hgvsp: ENSP00000233838.3:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+559C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg68Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

2-85787954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787954
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.198C>T
  hgvsp: ENST00000423570.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+555C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+555C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+555C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.317C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.198C>T
  hgvsp: ENST00000233838.4:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+555C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+555C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val66Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

2-85787954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787954
    reference: chr 2
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.198C>G
  hgvsp: ENST00000423570.1:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.198C>G
  hgvsp: ENST00000233838.4:c.198C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+555C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+555C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+555C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.317C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+555C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+555C>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val66Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

2-85787963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787963
    reference: chr 2
allele count: 223
allele frequency: 1.83678176067475e-3
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.189C>T
  hgvsp: ENST00000233838.4:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.308C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+546C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+546C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.189C>T
  hgvsp: ENST00000423570.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+546C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+546C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+546C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 9.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser63Ser
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

2-85787976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787976
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787976
    reference: chr 2
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.176C>T
  hgvsp: ENSP00000233838.3:p.Thr59Met
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+533C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.295C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.176C>T
  hgvsp: ENSP00000389426.1:p.Thr59Met
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+533C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+533C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+533C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+533C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19514
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr59Met
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-85787978-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787978
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787978
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+531A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.293A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.174A>C
  hgvsp: ENST00000423570.1:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+531A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+531A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.174A>C
  hgvsp: ENST00000233838.4:c.174A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+531A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+531A>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro58Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

2-85787993-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85787993
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85787993
    reference: chr 2
allele count: 31
allele frequency: 2.553289625407703e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+516C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.278C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.159C>A
  hgvsp: ENST00000423570.1:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.159C>A
  hgvsp: ENST00000233838.4:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+516C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+516C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+516C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+516C>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr53Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-85788007-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788007
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788007
    reference: chr 2
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+502C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+502C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+502C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.145C>A
  hgvsp: ENST00000233838.4:c.145C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+502C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+502C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.264C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.145C>A
  hgvsp: ENST00000423570.1:c.145C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19499
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg49Arg
num of homozygotes: 1
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-85788010-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788010
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788010
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.142T>G
  hgvsp: ENSP00000233838.3:p.Trp48Gly
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+499T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.142T>G
  hgvsp: ENSP00000389426.1:p.Trp48Gly
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.261T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+499T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+499T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+499T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+499T>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp48Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

2-85788010-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788010
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788010
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+499T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.261T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+499T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+499T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.142T>C
  hgvsp: ENSP00000389426.1:p.Trp48Arg
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+499T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+499T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.142T>C
  hgvsp: ENSP00000233838.3:p.Trp48Arg
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Trp48Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-85788012-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788012
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788012
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.140G>T
  hgvsp: ENSP00000233838.3:p.Ser47Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.259G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+497G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.140G>T
  hgvsp: ENSP00000389426.1:p.Ser47Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+497G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+497G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+497G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+497G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser47Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-85788015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788015
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788015
    reference: chr 2
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+494C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+494C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+494C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.256C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.137C>G
  hgvsp: ENSP00000389426.1:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+494C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.137C>G
  hgvsp: ENSP00000233838.3:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+494C>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19495
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser46Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

2-85788020-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788020
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788019
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+488delA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.131delA
  hgvsp: ENSP00000233838.3:p.Asp44ValfsTer9
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.131delA
  hgvsp: ENSP00000389426.1:p.Asp44ValfsTer9
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+488delA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.250delA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+488delA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+488delA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+488delA
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp44ValfsTer9
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: AT
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-85788023-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788023
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788023
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+486A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.248A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+486A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.129A>C
  hgvsp: ENST00000233838.4:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+486A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.129A>C
  hgvsp: ENST00000423570.1:c.129A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+486A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+486A>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19495
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr43Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-85788025-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788025
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788025
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.127A>C
  hgvsp: ENSP00000233838.3:p.Thr43Pro
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+484A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+484A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+484A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+484A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.127A>C
  hgvsp: ENSP00000389426.1:p.Thr43Pro
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+484A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.246A>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr43Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-85788038-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788038
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788038
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+471G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+471G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.233G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+471G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.114G>C
  hgvsp: ENSP00000233838.3:p.Leu38Phe
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.114G>C
  hgvsp: ENSP00000389426.1:p.Leu38Phe
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+471G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+471G>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54418
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu38Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-85788041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788041
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788041
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+468C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.111C>T
  hgvsp: ENST00000423570.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+468C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.230C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.111C>T
  hgvsp: ENST00000233838.4:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+468C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+468C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+468C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu37Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-85788054-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788054
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788054
    reference: chr 2
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.98G>T
  hgvsp: ENSP00000389426.1:p.Arg33Leu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.98G>T
  hgvsp: ENSP00000233838.3:p.Arg33Leu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+455G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+455G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.217G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+455G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+455G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+455G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19493
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg33Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

2-85788061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788061
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788061
    reference: chr 2
allele count: 41
allele frequency: 3.376931440055349e-4
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+448G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+448G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+448G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.91G>A
  hgvsp: ENSP00000389426.1:p.Asp31Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.91G>A
  hgvsp: ENSP00000233838.3:p.Asp31Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+448G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+448G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.210G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19498
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp31Asn
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-85788071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788071
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.81G>A
  hgvsp: ENST00000423570.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+438G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.81G>A
  hgvsp: ENST00000233838.4:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+438G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+438G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.200G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+438G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+438G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19472
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly27Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

2-85788074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788074
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788074
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.197A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+435A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+435A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+435A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.78A>G
  hgvsp: ENST00000423570.1:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.78A>G
  hgvsp: ENST00000233838.4:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+435A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+435A>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser26Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-85788074-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788074
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788074
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.197A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+435A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.78A>C
  hgvsp: ENST00000423570.1:c.78A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+435A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.78A>C
  hgvsp: ENST00000233838.4:c.78A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+435A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+435A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+435A>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser26Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-85788075-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788075
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+434C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+434C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.196C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.77C>G
  hgvsp: ENSP00000389426.1:p.Ser26Ter
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+434C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.77C>G
  hgvsp: ENSP00000233838.3:p.Ser26Ter
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+434C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+434C>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser26Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-85788078-ATCAGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788078
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788073
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+426_43+430delACTGA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+426_43+430delACTGA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+426_108+430delACTGA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.188_192delACTGA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+426_108+430delACTGA
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.69_73delACTGA
  hgvsp: ENSP00000389426.1:p.Glu23AspfsTer17
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.69_73delACTGA
  hgvsp: ENSP00000233838.3:p.Glu23AspfsTer17
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+426_43+430delACTGA
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 19469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu23AspfsTer17
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: ATCAGT
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-85788088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788088
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788088
    reference: chr 2
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.64G>A
  hgvsp: ENSP00000233838.3:p.Ala22Thr
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+421G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+421G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.64G>A
  hgvsp: ENSP00000389426.1:p.Ala22Thr
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+421G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+421G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.183G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+421G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19468
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala22Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

2-85788089-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788089
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788089
    reference: chr 2
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+420G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+420G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+420G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.63G>C
  hgvsp: ENSP00000389426.1:p.Lys21Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.63G>C
  hgvsp: ENSP00000233838.3:p.Lys21Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+420G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+420G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.182G>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys21Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-85788095-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788095
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788095
    reference: chr 2
allele count: 7
allele frequency: 5.767202741892961e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.176A>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+414A>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+414A>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+414A>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+414A>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.57A>T
  hgvsp: ENSP00000233838.3:p.Lys19Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.57A>T
  hgvsp: ENSP00000389426.1:p.Lys19Asn
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+414A>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19470
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys19Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

2-85788097-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788097
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788096
    reference: chr 2
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+411delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.54delG
  hgvsp: ENSP00000233838.3:p.Asp20ThrfsTer5
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+411delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+411delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+411delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.173delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.54delG
  hgvsp: ENSP00000389426.1:p.Asp20ThrfsTer5
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+411delG
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19464
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp20ThrfsTer5
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: TC
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-85788099-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788099
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788099
    reference: chr 2
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.172A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.53A>C
  hgvsp: ENSP00000389426.1:p.Gln18Pro
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+410A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+410A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+410A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+410A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+410A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.53A>C
  hgvsp: ENSP00000233838.3:p.Gln18Pro
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19464
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54403
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln18Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-85788109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788109
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788109
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+400G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-1G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+400G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+400G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-1G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-1G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+400G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+400G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
hgvs: c.44-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-85788117-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788117
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788117
    reference: chr 2
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+392T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+392T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-9T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+392T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-9T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+392T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-9T>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+392T>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-85788118-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788118
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788118
    reference: chr 2
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-10T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+391T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+391T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-10T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+391T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+391T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+391T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-10T>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54405
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

2-85788120-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788120
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788120
    reference: chr 2
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+389T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-12T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+389T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+389T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-12T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-12T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+389T>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+389T>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-85788123-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788123
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788123
    reference: chr 2
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-15A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-15A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+386A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+386A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+386A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-15A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+386A>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+386A>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-85788135-GTGTGCGGGGGTGGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788135
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788120
    reference: chr 2
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: GTGTGCGGGGGTGGGC
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-85788140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788140
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788140
    reference: chr 2
allele count: 32213
allele frequency: 2.665668134123332e-1
allele num: 120844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+369G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-32G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+369G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-32G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+369G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+369G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-32G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+369G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 6.25e1
  variant carriers: 673
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 18605
  bin: 9.75e1
  variant carriers: 14815
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 5.25e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 8.75e1
  variant carriers: 1927
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 1616
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 9.25e1
  variant carriers: 2087
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 5.75e1
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 7.25e1
  variant carriers: 1258
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 1855
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.75e1
  variant carriers: 894
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 4712
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

2-85788144-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788144
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788144
    reference: chr 2
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+365C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+365C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-36C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+365C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+365C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-36C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-36C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+365C>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/2-85788154-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788154
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788153
    reference: chr 2
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+354delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+354delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-47delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-47delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+354delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+354delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+354delG
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-47delG
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/2-85788155-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788155
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788155
    reference: chr 2
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.44-47G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+354G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+354G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.163-47G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+354G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+354G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.44-47G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+354G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

2-85788463-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788462
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 15506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+45delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+45delC
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15350
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22277
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: AG
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-85788469-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788469
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788469
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 15782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+40G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+40G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16160
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-85788476-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788476
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788476
    reference: chr 2
allele count: 473
allele frequency: 2.833013895543843e-2
allele num: 16696
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+33T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+33T>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18039
  bin: 7.5e0
  variant carriers: 646
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 28667
  bin: 2.5e0
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 2.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 1.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 23406
  bin: 7.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 6.75e1
  variant carriers: 51
num of homozygotes: 11
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-85788482-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788482
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788482
    reference: chr 2
allele count: 1
allele frequency: 5.885815185403178e-5
allele num: 16990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+27G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+27G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-85788485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788485
    reference: chr 2
allele count: 33
allele frequency: 1.876065946560546e-3
allele num: 17590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+24G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+24G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26657
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 23403
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 1
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-85788485-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788484
    reference: chr 2
allele count: 3
allele frequency: 1.705514496873223e-4
allele num: 17590
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+23delC
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+23delC
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: CG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-85788486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788486
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788486
    reference: chr 2
allele count: 1
allele frequency: 5.640794223826715e-5
allele num: 17728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+23C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+23C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-85788489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788489
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788489
    reference: chr 2
allele count: 3
allele frequency: 1.640240568616731e-4
allele num: 18290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+20C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+20C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22899
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19053
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-85788490-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788490
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788490
    reference: chr 2
allele count: 5
allele frequency: 2.712673611111111e-4
allele num: 18432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+19C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+19C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25284
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

2-85788498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788498
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788498
    reference: chr 2
allele count: 1
allele frequency: 4.987531172069826e-5
allele num: 20050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.108+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.43+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.162+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.43+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.43+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.43+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.43+11G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.108+11G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-85788514-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788514
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788514
    reference: chr 2
allele count: 20
allele frequency: 8.975854950184005e-4
allele num: 22282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.38G>T
  hgvsp: ENSP00000400384.1:p.Ser13Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.103G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.38G>T
  hgvsp: ENSP00000408045.3:p.Ser13Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.157G>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.38G>T
  hgvsp: ENSP00000233838.3:p.Ser13Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.38G>T
  hgvsp: ENSP00000389426.1:p.Ser13Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.38G>T
  hgvsp: ENSP00000390748.3:p.Ser13Ile
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.103G>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20361
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5771
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25627
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23498
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser13Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS

2-85788520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788520
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788520
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22934
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.32C>G
  hgvsp: ENSP00000233838.3:p.Ser11Trp
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.97C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.32C>G
  hgvsp: ENSP00000390748.3:p.Ser11Trp
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.32C>G
  hgvsp: ENSP00000400384.1:p.Ser11Trp
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.97C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.32C>G
  hgvsp: ENSP00000389426.1:p.Ser11Trp
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.32C>G
  hgvsp: ENSP00000408045.3:p.Ser11Trp
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.151C>G
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25900
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18987
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser11Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

2-85788522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788522
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788522
    reference: chr 2
allele count: 1
allele frequency: 4.321147696828278e-5
allele num: 23142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.95C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.30C>T
  hgvsp: ENST00000421496.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.30C>T
  hgvsp: ENST00000423570.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.30C>T
  hgvsp: ENST00000428479.3:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.30C>T
  hgvsp: ENST00000233838.4:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.30C>T
  hgvsp: ENST00000430215.3:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.95C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.149C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr10Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

2-85788522-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788522
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788522
    reference: chr 2
allele count: 2
allele frequency: 8.642295393656556e-5
allele num: 23142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.30C>G
  hgvsp: ENST00000430215.3:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.30C>G
  hgvsp: ENST00000233838.4:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.149C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.95C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.95C>G
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.30C>G
  hgvsp: ENST00000428479.3:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.30C>G
  hgvsp: ENST00000423570.1:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.30C>G
  hgvsp: ENST00000421496.1:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18903
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr10Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

2-85788526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788526
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788526
    reference: chr 2
allele count: 2
allele frequency: 8.470986869970351e-5
allele num: 23610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.145G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.26G>A
  hgvsp: ENSP00000400384.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.91G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.26G>A
  hgvsp: ENSP00000389426.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.26G>A
  hgvsp: ENSP00000390748.3:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.91G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.26G>A
  hgvsp: ENSP00000408045.3:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.26G>A
  hgvsp: ENSP00000233838.3:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25575
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18770
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg9Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-85788528-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788528
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23940
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.24G>C
  hgvsp: ENST00000233838.4:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.24G>C
  hgvsp: ENST00000423570.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.24G>C
  hgvsp: ENST00000430215.3:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.89G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.24G>C
  hgvsp: ENST00000428479.3:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.143G>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.24G>C
  hgvsp: ENST00000421496.1:c.24G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.89G>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 19546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25673
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala8Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-85788528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788528
    reference: chr 2
allele count: 29
allele frequency: 1.211361737677527e-3
allele num: 23940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.89G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.24G>A
  hgvsp: ENST00000428479.3:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.24G>A
  hgvsp: ENST00000233838.4:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.24G>A
  hgvsp: ENST00000421496.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.24G>A
  hgvsp: ENST00000430215.3:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.143G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.24G>A
  hgvsp: ENST00000423570.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.89G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25673
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Ala8Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-85788537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788537
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788537
    reference: chr 2
allele count: 25
allele frequency: 1.020491468691322e-3
allele num: 24498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.15C>T
  hgvsp: ENST00000430215.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.15C>T
  hgvsp: ENST00000423570.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.15C>T
  hgvsp: ENST00000233838.4:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.80C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.15C>T
  hgvsp: ENST00000428479.3:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.15C>T
  hgvsp: ENST00000421496.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.134C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.80C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19539
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18860
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6223
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala5Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

2-85788544-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788544
    reference: chr 2
allele count: 2
allele frequency: 8.028259473346178e-5
allele num: 24912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.73T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.8T>A
  hgvsp: ENSP00000390748.3:p.Val3Glu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.8T>A
  hgvsp: ENSP00000389426.1:p.Val3Glu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.8T>A
  hgvsp: ENSP00000408045.3:p.Val3Glu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.8T>A
  hgvsp: ENSP00000233838.3:p.Val3Glu
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.73T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.127T>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.8T>A
  hgvsp: ENSP00000400384.1:p.Val3Glu
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val3Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-85788546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788546
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788546
    reference: chr 2
allele count: 1
allele frequency: 4.013807497792406e-5
allele num: 24914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.6G>A
  hgvsp: ENST00000423570.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.125G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.6G>A
  hgvsp: ENST00000430215.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.6G>A
  hgvsp: ENST00000233838.4:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.6G>A
  hgvsp: ENST00000428479.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.6G>A
  hgvsp: ENST00000421496.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.71G>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.71G>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23628
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala2Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

2-85788547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788547
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788547
    reference: chr 2
allele count: 1
allele frequency: 4.0e-5
allele num: 25000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.5C>T
  hgvsp: ENSP00000408045.3:p.Ala2Val
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.70C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.5C>T
  hgvsp: ENSP00000389426.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.5C>T
  hgvsp: ENSP00000233838.3:p.Ala2Val
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.70C>T
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.5C>T
  hgvsp: ENSP00000390748.3:p.Ala2Val
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.5C>T
  hgvsp: ENSP00000400384.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.124C>T
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24544
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala2Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

2-85788552-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788552
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788552
    reference: chr 2
allele count: 1
allele frequency: 3.989467804994814e-5
allele num: 25066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.-1A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.-1A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.65A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.119A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.-1A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.65A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.-1A>C
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.-1A>C
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

2-85788553-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788553
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788553
    reference: chr 2
allele count: 2
allele frequency: 8.027614995584812e-5
allele num: 24914
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  hgvsc: ENST00000233838.4:c.-2C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  hgvsc: ENST00000430215.3:c.-2C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  hgvsc: ENST00000423570.1:c.-2C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  hgvsc: ENST00000428479.3:c.-2C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  hgvsc: ENST00000481541.1:n.64C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  hgvsc: ENST00000496962.1:n.118C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  hgvsc: ENST00000421496.1:c.-2C>A
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  hgvsc: ENST00000465637.1:n.64C>A
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-85788564-GAGGCAGGTGGGTCACAGCTGCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 85788564
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 85788542
    reference: chr 2
allele count: 1
allele frequency: 4.0842999509884e-5
allele num: 24484
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000481541
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000389426
  ensembl transcript: ENST00000423570
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000390748
  ensembl transcript: ENST00000428479
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000496962
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000233838
  ensembl transcript: ENST00000233838
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000400384
  ensembl transcript: ENST00000421496
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115486
  ensembl protein: ENSP00000408045
  ensembl transcript: ENST00000430215
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115486
  ensembl transcript: ENST00000465637
  gene symbol: GGCX
  variant of: http://identifiers.org/hgnc/4247
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 22469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: GAGGCAGGTGGGTCACAGCTGCC

GenotypeQuality
all individuals: 738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.075082e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.573e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 5.075319e6

QD
type: SiteQuality
SIO_000300: 1.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.643e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.664e0

FS
type: SiteQuality
SIO_000300: 1.334e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.193e0

QD
type: SiteQuality
SIO_000300: 1.527e1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 5.075367e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.075616e6

MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.85e-2

QD
type: SiteQuality
SIO_000300: 2.628e1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 4.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.769e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 5.076341e6

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.436e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 1.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-2

ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

MQRankSum
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SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 5.076811e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
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SIO_000300: -8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.385e1

VQSLOD
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SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 2165
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.076811e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.27e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 13
allele frequency: 1.249279261964251e-3
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 14
allele frequency: 1.20918984280532e-3
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 191
allele frequency: 2.861937726632503e-3
allele num: 66738
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 6.47e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
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SIO_000300: -5.011e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 5.091742e6

QD
type: SiteQuality
SIO_000300: 1.361e1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

QD
type: SiteQuality
SIO_000300: 1.364e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.326e0

MQRankSum
type: SiteQuality
SIO_000300: 9.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.068192e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 1.283e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.588e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.068041e6

QD
type: SiteQuality
SIO_000300: 1.667e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.786853738227946e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.107e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

QD
type: SiteQuality
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MQ
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SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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DP
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11578
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Other
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South Asian
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allele frequency: 6.056201550387597e-5
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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QD
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DP
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FS
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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South Asian
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Other
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.377e0

ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.048846269103986e-4
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

DP
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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VQSLOD
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 4.857e0

VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -3.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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East Asian
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QD
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Other
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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Latino
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European (Finnish)
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MQ
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Latino
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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Other
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQ
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DP
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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African
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MQ
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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allele num: 66740
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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South Asian
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66736
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African
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East Asian
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South Asian
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Other
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Latino
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European (Finnish)
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MQRankSum
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MQ
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ClippingRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66736
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Latino
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Other
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Latino
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 7.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

FS
type: SiteQuality
SIO_000300: 7.479e0

VQSLOD
type: SiteQuality
SIO_000300: -1.758e0

DP
type: SiteQuality
SIO_000300: 5.062677e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.507e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.877e0

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 1.1754e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 5.059685e6

MQ
type: SiteQuality
SIO_000300: 5.779e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.439e0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 932
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.595e1

FS
type: SiteQuality
SIO_000300: 2.353e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 5.057217e6

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1894
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

QD
type: SiteQuality
SIO_000300: 1.652e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 5.056681e6

FS
type: SiteQuality
SIO_000300: 2.113e0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
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GenotypeQuality
all individuals: 1808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54404
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.542e0

QD
type: SiteQuality
SIO_000300: 1.548e1

FS
type: SiteQuality
SIO_000300: 1.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 5.055556e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.445e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

FS
type: SiteQuality
SIO_000300: 2.051e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 5.05541e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.972e0

QD
type: SiteQuality
SIO_000300: 1.53e1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.833e0

FS
type: SiteQuality
SIO_000300: 1.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 5.047816e6

GenotypeQuality
all individuals: 260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 550
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 55547
bin: 9.75e1
variant carriers: 27357

GenotypeQuality
all individuals: 39
bin: 5.75e1
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GenotypeQuality
all individuals: 522
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variant carriers: 18

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 974
bin: 6.25e1
variant carriers: 15

Other
type: Population
allele count: 238
allele frequency: 2.621145374449339e-1
allele num: 908
num of homozygotes: 32

African
type: Population
allele count: 535
allele frequency: 5.34358769476628e-2
allele num: 10012
num of homozygotes: 22

European (Finnish)
type: Population
allele count: 2486
allele frequency: 3.763245534362701e-1
allele num: 6606
num of homozygotes: 478

East Asian
type: Population
allele count: 1134
allele frequency: 1.314630187804313e-1
allele num: 8626
num of homozygotes: 72

European (Non-Finnish)
type: Population
allele count: 20758
allele frequency: 3.115600516314952e-1
allele num: 66626
num of homozygotes: 3205

Latino
type: Population
allele count: 2554
allele frequency: 2.208196437835034e-1
allele num: 11566
num of homozygotes: 260

South Asian
type: Population
allele count: 4508
allele frequency: 2.732121212121212e-1
allele num: 16500
num of homozygotes: 643

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

QD
type: SiteQuality
SIO_000300: 1.833e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.987714e6

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 1629
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 52205
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 4.186955e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.438e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.294e0

QD
type: SiteQuality
SIO_000300: 1.672e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 1165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
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GenotypeQuality
all individuals: 850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.25e1
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GenotypeQuality
all individuals: 1360
bin: 9.25e1
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GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.869e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.535e0

MQ
type: SiteQuality
SIO_000300: 5.471e1

DP
type: SiteQuality
SIO_000300: 4.181281e6

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.223e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.076e0

DP
type: SiteQuality
SIO_000300: 4.181116e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.291e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 3.20501e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 471
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.35944e5

QD
type: SiteQuality
SIO_000300: 8.48e0

GenotypeQuality
all individuals: 13648
bin: 2.25e1
variant carriers: 77

GenotypeQuality
all individuals: 3082
bin: 2.5e0
variant carriers: 3

GenotypeQuality
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bin: 2.75e1
variant carriers: 80

GenotypeQuality
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bin: 3.75e1
variant carriers: 10

GenotypeQuality
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bin: 3.25e1
variant carriers: 27

GenotypeQuality
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bin: 5.75e1
variant carriers: 69

GenotypeQuality
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bin: 1.25e1
variant carriers: 37

GenotypeQuality
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bin: 6.25e1
variant carriers: 72

GenotypeQuality
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bin: 8.75e1
variant carriers: 80

GenotypeQuality
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bin: 8.25e1
variant carriers: 36

GenotypeQuality
all individuals: 738
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variant carriers: 451

GenotypeQuality
all individuals: 250
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2490
bin: 1.75e1
variant carriers: 45

African
type: Population
allele count: 9
allele frequency: 5.821474773609315e-3
allele num: 1546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 358
allele frequency: 5.804150453955902e-2
allele num: 6168
num of homozygotes: 9

South Asian
type: Population
allele count: 87
allele frequency: 1.216783216783217e-2
allele num: 7150
num of homozygotes: 2

Latino
type: Population
allele count: 8
allele frequency: 2.702702702702703e-2
allele num: 296
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.142857142857143e-2
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 8.695652173913043e-2
allele num: 92
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.60371e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1221
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.379310344827586e-4
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.753e1

FS
type: SiteQuality
SIO_000300: 6.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.95e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.55e0

DP
type: SiteQuality
SIO_000300: 3.77759e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 190
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 32
allele frequency: 1.893491124260355e-2
allele num: 1690
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.578947368421052e-3
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

DP
type: SiteQuality
SIO_000300: 3.92216e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 1

East Asian
type: Population
allele count: 3
allele frequency: 2.008032128514056e-3
allele num: 1494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

DP
type: SiteQuality
SIO_000300: 3.92216e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 623
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GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

DP
type: SiteQuality
SIO_000300: 3.96772e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.058e1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 497
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4239
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GenotypeQuality
all individuals: 66
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.889168765743073e-3
allele num: 1588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.167e0

QD
type: SiteQuality
SIO_000300: 1.519e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.464e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.06532e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.368083867210251e-4
allele num: 6868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.282051282051282e-2
allele num: 156
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 1.642e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 4.08915e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.311647429171039e-4
allele num: 7624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.044e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

DP
type: SiteQuality
SIO_000300: 4.36709e5

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 1.479e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.152e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
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GenotypeQuality
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bin: 6.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.926108374384237e-3
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 7.992895204262877e-3
allele num: 2252
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.70881e5

QD
type: SiteQuality
SIO_000300: 1.151e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.52e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 4.78502e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.577e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.075962986873252e-4
allele num: 9294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-2

FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
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African
type: Population
allele count: 2
allele frequency: 8.488964346349745e-4
allele num: 2356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0131e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.373605506764776e-4
allele num: 8426
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 5.642e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2378
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 232
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 4.84457e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18749
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6252
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23994
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 265
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 3

African
type: Population
allele count: 2
allele frequency: 8.176614881439084e-4
allele num: 2446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 2.656856734109953e-3
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.310344827586207e-3
allele num: 232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.304e0

DP
type: SiteQuality
SIO_000300: 4.84457e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23720
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2018
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.75e1
variant carriers: 23

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.175640724194686e-4
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.948269001193792e-5
allele num: 10052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 9.274193548387096e-3
allele num: 2480
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.112e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.75e-2

DP
type: SiteQuality
SIO_000300: 4.87391e5

FS
type: SiteQuality
SIO_000300: 2.464e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19053
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23417
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
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variant carriers: 2

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.918495297805642e-4
allele num: 2552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.473e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 1.3551e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.85786e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeQuality
all individuals: 850
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19426
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 673
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 817
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 6119
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.908396946564885e-3
allele num: 524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.85844e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -9.195e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 4.144e0

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19461
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 316
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 4.87097e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 3.916e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 896
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23060
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
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GenotypeQuality
all individuals: 718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.714e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 4.77743e5

GenotypeQuality
all individuals: 318
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1023
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20403
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 9.0e0

FS
type: SiteQuality
SIO_000300: 3.093e0

VQSLOD
type: SiteQuality
SIO_000300: -6.153e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.127e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.7525e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0