1-25570745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25570745
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25570745
    reference: chr 1
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.350-621C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.*37-30C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.673-30C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.304C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.1232C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.673-621C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.1780C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.675+170C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.223+200C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.*36+200C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

1-25570898-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25570898
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25570897
    reference: chr 1
allele count: 2
allele frequency: 1.857700167193015e-4
allele num: 10766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.1078delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.1626delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.150delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.675+16delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.*36+46delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.223+46delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+742delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+742delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.673-184delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.*36+46delT
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: TA
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-25570932-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25570932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25570932
    reference: chr 1
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.1045T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.658T>C
  hgvsp: ENSP00000411631.2:p.Trp220Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+709T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+709T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.*36+13T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.117T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.1593T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.223+13T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.673-217T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.*36+13T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp220Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

1-25570992-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25570992
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25570992
    reference: chr 1
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.985T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.673-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.1533T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.623-25T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.673-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.673-277T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.245-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.60-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.179-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+649T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+649T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.673-3T>C
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-25571539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571539
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571539
    reference: chr 1
allele count: 2
allele frequency: 1.694886527346994e-5
allele num: 118002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.521A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.438A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.986A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+102A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+131A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+102A>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

1-25571554-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571554
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571554
    reference: chr 1
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.423T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.971T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.506T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+87T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+116T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+87T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-25571558-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571558
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571558
    reference: chr 1
allele count: 1
allele frequency: 8.399267583866688e-6
allele num: 119058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.502C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+112C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.967C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.419C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+83C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+83C>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

1-25571562-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571562
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571561
    reference: chr 1
allele count: 2
allele frequency: 1.675126053235506e-5
allele num: 119394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.962delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+107delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+78delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.497delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.414delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+78delC
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

1-25571563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571563
    reference: chr 1
allele count: 4
allele frequency: 3.347056264015798e-5
allele num: 119508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.414C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.497C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+78C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.962C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+107C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+78C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-25571569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571569
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571569
    reference: chr 1
allele count: 3
allele frequency: 2.500166677778519e-5
allele num: 119992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.956C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.408C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+101C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.491C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+72C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+72C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

1-25571572-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571572
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571572
    reference: chr 1
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.405T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.488T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.953T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+98T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+69T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+69T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

1-25571572-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571572
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571572
    reference: chr 1
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.488T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.405T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.953T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+69T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+98T>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+69T>A
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

1-25571573-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571573
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571573
    reference: chr 1
allele count: 2
allele frequency: 1.662703889064397e-5
allele num: 120286
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+97A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.487A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.404A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.952A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+68A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+68A>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

1-25571573-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571573
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571572
    reference: chr 1
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+96delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.486delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.403delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.951delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+67delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+67delT
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: TA
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-25571576-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571576
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571576
    reference: chr 1
allele count: 8
allele frequency: 6.641098437681592e-5
allele num: 120462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.949C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.484C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.401C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+94C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+65C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+65C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-25571578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571578
    reference: chr 1
allele count: 2
allele frequency: 1.658952537367906e-5
allele num: 120558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+92C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.399C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.482C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.947C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+63C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-25571587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571587
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571587
    reference: chr 1
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.938C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+83C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.390C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.473C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+54C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+54C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-25571599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571599
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571599
    reference: chr 1
allele count: 2
allele frequency: 1.650737054094653e-5
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.926C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.378C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+71C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.461C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+42C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+42C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-25571606-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571606
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571606
    reference: chr 1
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.919A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+64A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+35A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.371A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.454A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+35A>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

1-25571607-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571607
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571607
    reference: chr 1
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.453C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.918C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+63C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.370C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+34C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+34C>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-25571611-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571611
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571611
    reference: chr 1
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.449C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.366C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+59C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.914C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+30C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+30C>G
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-25571619-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571619
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571619
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.358G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+51G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.441G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.906G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+22G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-25571620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571620
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571620
    reference: chr 1
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.440G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.357G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+50G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.905G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+21G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+21G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

1-25571621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571621
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571621
    reference: chr 1
allele count: 10
allele frequency: 8.240626287597858e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.439C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.356C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+49C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.904C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+20C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+20C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-25571627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571627
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571627
    reference: chr 1
allele count: 59
allele frequency: 4.861088224631711e-4
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.350G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.898G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.433G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+14G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+43G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+14G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

1-25571631-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571631
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571631
    reference: chr 1
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.894C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.346C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+39C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.672+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.672+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.349+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.429C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.178+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.59+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.672+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.672+10C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.244+10C>A
  variant of: http://identifiers.org/hgnc/25234
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

1-25571642-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571642
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571642
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.243A>C
  hgvsp: ENSP00000454463.1:p.Glu82Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.418A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.348A>C
  hgvsp: ENSP00000455127.1:p.Glu117Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.177A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.671A>C
  hgvsp: ENSP00000457582.1:p.Glu224Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.58A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+28A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.671A>C
  hgvsp: ENSP00000391510.2:p.Glu224Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.671A>C
  hgvsp: ENSP00000457195.1:p.Glu224Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.671A>C
  hgvsp: ENSP00000243189.7:p.Glu224Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.335A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.883A>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu224Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-25571643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571643
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571643
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.57G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+27G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.670G>A
  hgvsp: ENSP00000391510.2:p.Glu224Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.242G>A
  hgvsp: ENSP00000454463.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.334G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.670G>A
  hgvsp: ENSP00000457195.1:p.Glu224Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.347G>A
  hgvsp: ENSP00000455127.1:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.417G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.670G>A
  hgvsp: ENSP00000457582.1:p.Glu224Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.670G>A
  hgvsp: ENSP00000243189.7:p.Glu224Lys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.176G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.882G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu224Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-25571644-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571644
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571644
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.56T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.346T>C
  hgvsp: ENST00000565733.1:c.346T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.333T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.241T>C
  hgvsp: ENST00000566395.1:c.241T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.416T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.669T>C
  hgvsp: ENST00000473314.2:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.669T>C
  hgvsp: ENST00000568254.1:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.669T>C
  hgvsp: ENST00000243189.7:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.175T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.669T>C
  hgvsp: ENST00000431849.2:c.669T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+26T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.881T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro223Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

1-25571660-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571660
    reference: chr 1
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.225G>C
  hgvsp: ENSP00000454463.1:p.Ser76Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.330G>C
  hgvsp: ENSP00000455127.1:p.Ser111Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.40G>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.159G>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+10G>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.653G>C
  hgvsp: ENSP00000457195.1:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.653G>C
  hgvsp: ENSP00000243189.7:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.865G>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.653G>C
  hgvsp: ENSP00000391510.2:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.400G>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.653G>C
  hgvsp: ENSP00000457582.1:p.Ser218Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.317G>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser218Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-25571666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571666
    reference: chr 1
allele count: 31
allele frequency: 2.553584078815137e-4
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.859T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.647T>C
  hgvsp: ENSP00000243189.7:p.Val216Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.324T>C
  hgvsp: ENSP00000455127.1:p.Val109Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.311T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.647T>C
  hgvsp: ENSP00000457195.1:p.Val216Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.219T>C
  hgvsp: ENSP00000454463.1:p.Val74Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.622+4T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.394T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.647T>C
  hgvsp: ENSP00000457582.1:p.Val216Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.153T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.647T>C
  hgvsp: ENSP00000391510.2:p.Val216Ala
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.34T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val216Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-25571667-C-CACCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571671
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: CACCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.642_645dupAGGT
  hgvsp: ENSP00000391510.2:p.Val216ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.319_322dupAGGT
  hgvsp: ENSP00000455127.1:p.Val109ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.621_622+2dupAGGT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.148_151dupAGGT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.642_645dupAGGT
  hgvsp: ENSP00000243189.7:p.Val216ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.642_645dupAGGT
  hgvsp: ENSP00000457195.1:p.Val216ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.642_645dupAGGT
  hgvsp: ENSP00000457582.1:p.Val216ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.214_217dupAGGT
  hgvsp: ENSP00000454463.1:p.Val74ArgfsTer5
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.29_32dupAGGT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.854_857dupAGGT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.306_309dupAGGT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.389_392dupAGGT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val216ArgfsTer5
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-25571677-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571677
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571677
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.208T>C
  hgvsp: ENST00000566395.1:c.208T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.23T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.636T>C
  hgvsp: ENST00000243189.7:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.615T>C
  hgvsp: ENST00000417642.2:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.313T>C
  hgvsp: ENST00000565733.1:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.636T>C
  hgvsp: ENST00000568254.1:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.636T>C
  hgvsp: ENST00000473314.2:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.142T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.383T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.636T>C
  hgvsp: ENST00000431849.2:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.848T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.300T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

1-25571678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571678
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571678
    reference: chr 1
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.141G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.22G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.207G>A
  hgvsp: ENSP00000454463.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.299G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.635G>A
  hgvsp: ENSP00000457195.1:p.Arg212His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.635G>A
  hgvsp: ENSP00000457582.1:p.Arg212His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.382G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.635G>A
  hgvsp: ENSP00000391510.2:p.Arg212His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.614G>A
  hgvsp: ENSP00000411631.2:p.Arg205His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.312G>A
  hgvsp: ENSP00000455127.1:p.Arg105His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.635G>A
  hgvsp: ENSP00000243189.7:p.Arg212His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.847G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg212His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-25571679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571679
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571679
    reference: chr 1
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.613C>T
  hgvsp: ENSP00000411631.2:p.Arg205Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.634C>T
  hgvsp: ENSP00000457195.1:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.634C>T
  hgvsp: ENSP00000457582.1:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.206C>T
  hgvsp: ENSP00000454463.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.634C>T
  hgvsp: ENSP00000391510.2:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.846C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.634C>T
  hgvsp: ENSP00000243189.7:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.21C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.381C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.140C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.311C>T
  hgvsp: ENSP00000455127.1:p.Arg105Cys
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.298C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-25571679-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571679
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571679
    reference: chr 1
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.21C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.311C>A
  hgvsp: ENSP00000455127.1:p.Arg105Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.634C>A
  hgvsp: ENSP00000457582.1:p.Arg212Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.846C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.634C>A
  hgvsp: ENSP00000243189.7:p.Arg212Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.634C>A
  hgvsp: ENSP00000457195.1:p.Arg212Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.613C>A
  hgvsp: ENSP00000411631.2:p.Arg205Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.206C>A
  hgvsp: ENSP00000454463.1:p.Arg70Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.381C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.634C>A
  hgvsp: ENSP00000391510.2:p.Arg212Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.140C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.298C>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg212Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

1-25571683-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571683
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571683
    reference: chr 1
allele count: 5
allele frequency: 4.118616144975288e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.842A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.17A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.630A>G
  hgvsp: ENST00000568254.1:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.609A>G
  hgvsp: ENST00000417642.2:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.630A>G
  hgvsp: ENST00000473314.2:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.630A>G
  hgvsp: ENST00000243189.7:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.307A>G
  hgvsp: ENST00000565733.1:c.307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.202A>G
  hgvsp: ENST00000566395.1:c.202A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.630A>G
  hgvsp: ENST00000431849.2:c.630A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.294A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.136A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.377A>G
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr210Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-25571690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571690
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571690
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.602A>G
  hgvsp: ENSP00000411631.2:p.Lys201Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.195A>G
  hgvsp: ENSP00000454463.1:p.Lys66Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.300A>G
  hgvsp: ENSP00000455127.1:p.Lys101Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.287A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.835A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.623A>G
  hgvsp: ENSP00000457582.1:p.Lys208Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.10A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.623A>G
  hgvsp: ENSP00000243189.7:p.Lys208Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.129A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.623A>G
  hgvsp: ENSP00000391510.2:p.Lys208Arg
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.370A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.623A>G
  hgvsp: ENSP00000457195.1:p.Lys208Arg
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys208Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-25571692-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571692
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.127C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.193C>A
  hgvsp: ENST00000566395.1:c.193C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.621C>A
  hgvsp: ENST00000243189.7:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.285C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.298C>A
  hgvsp: ENST00000565733.1:c.298C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.621C>A
  hgvsp: ENST00000431849.2:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.368C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.621C>A
  hgvsp: ENST00000473314.2:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.600C>A
  hgvsp: ENST00000417642.2:c.600C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.833C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.621C>A
  hgvsp: ENST00000568254.1:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.8C>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala207Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-25571698-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571697
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.291delC
  hgvsp: ENSP00000455127.1:p.Pro98LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.120delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.614delC
  hgvsp: ENSP00000457582.1:p.Pro205LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.826delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.614delC
  hgvsp: ENSP00000457195.1:p.Pro205LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.593delC
  hgvsp: ENSP00000411631.2:p.Pro198LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.186delC
  hgvsp: ENSP00000454463.1:p.Pro63LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.614delC
  hgvsp: ENSP00000391510.2:p.Pro205LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.614delC
  hgvsp: ENSP00000243189.7:p.Pro205LeufsTer10
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.278delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.1delC
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.361delC
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro205LeufsTer10
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: AG
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-25571699-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571699
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571699
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.593C>A
  hgvsp: ENSP00000411631.2:p.Pro198His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000491378
  gene symbol: C1orf63
  hgvsc: ENST00000491378.1:n.1C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.361C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.291C>A
  hgvsp: ENSP00000455127.1:p.Pro98His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.614C>A
  hgvsp: ENSP00000391510.2:p.Pro205His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.614C>A
  hgvsp: ENSP00000243189.7:p.Pro205His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.120C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.186C>A
  hgvsp: ENSP00000454463.1:p.Pro63His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.614C>A
  hgvsp: ENSP00000457582.1:p.Pro205His
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.278C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.826C>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.614C>A
  hgvsp: ENSP00000457195.1:p.Pro205His
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro205His
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-25571717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571717
    reference: chr 1
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.168C>T
  hgvsp: ENSP00000454463.1:p.Ala57Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.596C>T
  hgvsp: ENSP00000457582.1:p.Ala199Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.596C>T
  hgvsp: ENSP00000391510.2:p.Ala199Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.102C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.343C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.808C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.596C>T
  hgvsp: ENSP00000243189.7:p.Ala199Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.575C>T
  hgvsp: ENSP00000411631.2:p.Ala192Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.596C>T
  hgvsp: ENSP00000457195.1:p.Ala199Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.273C>T
  hgvsp: ENSP00000455127.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.260C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala199Val
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-25571730-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571730
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571730
    reference: chr 1
allele count: 7
allele frequency: 5.766632616074076e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.260A>G
  hgvsp: ENSP00000455127.1:p.Ile88Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.795A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.330A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.583A>G
  hgvsp: ENSP00000391510.2:p.Ile195Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.583A>G
  hgvsp: ENSP00000457582.1:p.Ile195Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.583A>G
  hgvsp: ENSP00000243189.7:p.Ile195Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.583A>G
  hgvsp: ENSP00000457195.1:p.Ile195Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.562A>G
  hgvsp: ENSP00000411631.2:p.Ile188Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.247A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.89A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.155A>G
  hgvsp: ENSP00000454463.1:p.Ile53Val
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile195Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

1-25571745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571745
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571745
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.780C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.74C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.568C>T
  hgvsp: ENST00000473314.2:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.232C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.140C>T
  hgvsp: ENST00000566395.1:c.140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.568C>T
  hgvsp: ENST00000568254.1:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.547C>T
  hgvsp: ENST00000417642.2:c.547C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.245C>T
  hgvsp: ENST00000565733.1:c.245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.315C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.568C>T
  hgvsp: ENST00000243189.7:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.568C>T
  hgvsp: ENST00000431849.2:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu190Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-25571752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571752
    reference: chr 1
allele count: 3
allele frequency: 2.472269378471478e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.561G>A
  hgvsp: ENST00000473314.2:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.540G>A
  hgvsp: ENST00000417642.2:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.67G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.561G>A
  hgvsp: ENST00000431849.2:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.238G>A
  hgvsp: ENST00000565733.1:c.238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.561G>A
  hgvsp: ENST00000568254.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.133G>A
  hgvsp: ENST00000566395.1:c.133G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.225G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.773G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.561G>A
  hgvsp: ENST00000243189.7:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.308G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18491
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala187Ala
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-25571753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571753
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571753
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.772C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.560C>T
  hgvsp: ENSP00000457582.1:p.Ala187Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.307C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.237C>T
  hgvsp: ENSP00000455127.1:p.Ala80Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.560C>T
  hgvsp: ENSP00000391510.2:p.Ala187Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.560C>T
  hgvsp: ENSP00000457195.1:p.Ala187Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.560C>T
  hgvsp: ENSP00000243189.7:p.Ala187Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.132C>T
  hgvsp: ENSP00000454463.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.224C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.539C>T
  hgvsp: ENSP00000411631.2:p.Ala180Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.66C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala187Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-25571754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571754
    reference: chr 1
allele count: 4
allele frequency: 3.296685183048445e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.236G>A
  hgvsp: ENSP00000455127.1:p.Ala80Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.771G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.65G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.131G>A
  hgvsp: ENSP00000454463.1:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.223G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.559G>A
  hgvsp: ENSP00000391510.2:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.559G>A
  hgvsp: ENSP00000457195.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.306G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.538G>A
  hgvsp: ENSP00000411631.2:p.Ala180Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.559G>A
  hgvsp: ENSP00000457582.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.559G>A
  hgvsp: ENSP00000243189.7:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala187Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

1-25571756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571756
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.304C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.536C>T
  hgvsp: ENSP00000411631.2:p.Ala179Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.557C>T
  hgvsp: ENSP00000457582.1:p.Ala186Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.63C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.234C>T
  hgvsp: ENSP00000455127.1:p.Ala79Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.557C>T
  hgvsp: ENSP00000391510.2:p.Ala186Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.557C>T
  hgvsp: ENSP00000457195.1:p.Ala186Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.221C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.769C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.557C>T
  hgvsp: ENSP00000243189.7:p.Ala186Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.129C>T
  hgvsp: ENSP00000454463.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala186Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

1-25571759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571759
    reference: chr 1
allele count: 3
allele frequency: 2.472880741204788e-5
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.554A>G
  hgvsp: ENSP00000457195.1:p.Asn185Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.301A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.554A>G
  hgvsp: ENSP00000243189.7:p.Asn185Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.231A>G
  hgvsp: ENSP00000455127.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.126A>G
  hgvsp: ENSP00000454463.1:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.533A>G
  hgvsp: ENSP00000411631.2:p.Asn178Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.218A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.766A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.60A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.554A>G
  hgvsp: ENSP00000457582.1:p.Asn185Ser
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.554A>G
  hgvsp: ENSP00000391510.2:p.Asn185Ser
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn185Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-25571762-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571762
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571761
    reference: chr 1
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.56delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.550delA
  hgvsp: ENSP00000457582.1:p.Thr184ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.550delA
  hgvsp: ENSP00000391510.2:p.Thr184ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.297delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.550delA
  hgvsp: ENSP00000457195.1:p.Thr184ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.227delA
  hgvsp: ENSP00000455127.1:p.Thr77ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.122delA
  hgvsp: ENSP00000454463.1:p.Thr42ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.529delA
  hgvsp: ENSP00000411631.2:p.Thr177ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.214delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.550delA
  hgvsp: ENSP00000243189.7:p.Thr184ProfsTer7
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.762delA
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr184ProfsTer7
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: GT
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-25571767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571767
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571767
    reference: chr 1
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.546A>G
  hgvsp: ENST00000473314.2:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.546A>G
  hgvsp: ENST00000568254.1:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.293A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.210A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.525A>G
  hgvsp: ENST00000417642.2:c.525A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.223A>G
  hgvsp: ENST00000565733.1:c.223A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.546A>G
  hgvsp: ENST00000243189.7:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.758A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.118A>G
  hgvsp: ENST00000566395.1:c.118A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.546A>G
  hgvsp: ENST00000431849.2:c.546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.52A>G
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

1-25571768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571768
    reference: chr 1
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.757C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.545C>T
  hgvsp: ENSP00000243189.7:p.Ala182Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.524C>T
  hgvsp: ENSP00000411631.2:p.Ala175Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.545C>T
  hgvsp: ENSP00000457195.1:p.Ala182Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.545C>T
  hgvsp: ENSP00000391510.2:p.Ala182Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.545C>T
  hgvsp: ENSP00000457582.1:p.Ala182Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.209C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.222C>T
  hgvsp: ENSP00000455127.1:p.Ala75Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.51C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.292C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.117C>T
  hgvsp: ENSP00000454463.1:p.Ala40Val
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-25571769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571769
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571769
    reference: chr 1
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.544G>A
  hgvsp: ENSP00000391510.2:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.544G>A
  hgvsp: ENSP00000457195.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.756G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.523G>A
  hgvsp: ENSP00000411631.2:p.Ala175Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.116G>A
  hgvsp: ENSP00000454463.1:p.Ala40Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.221G>A
  hgvsp: ENSP00000455127.1:p.Ala75Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.544G>A
  hgvsp: ENSP00000457582.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.208G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.544G>A
  hgvsp: ENSP00000243189.7:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.50G>A
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.291G>A
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala182Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

1-25571774-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571774
    reference: chr 1
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.751A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.539A>G
  hgvsp: ENSP00000457582.1:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.111A>G
  hgvsp: ENSP00000454463.1:p.Glu38Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.203A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.539A>G
  hgvsp: ENSP00000457195.1:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.216A>G
  hgvsp: ENSP00000455127.1:p.Glu73Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.45A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.518A>G
  hgvsp: ENSP00000411631.2:p.Glu173Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.286A>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.539A>G
  hgvsp: ENSP00000391510.2:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.539A>G
  hgvsp: ENSP00000243189.7:p.Glu180Gly
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu180Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-25571775-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571775
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571775
    reference: chr 1
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.215G>T
  hgvsp: ENSP00000455127.1:p.Glu73Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.538G>T
  hgvsp: ENSP00000243189.7:p.Glu180Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.110G>T
  hgvsp: ENSP00000454463.1:p.Glu38Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.538G>T
  hgvsp: ENSP00000391510.2:p.Glu180Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.538G>T
  hgvsp: ENSP00000457582.1:p.Glu180Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.202G>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.44G>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.517G>T
  hgvsp: ENSP00000411631.2:p.Glu173Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.285G>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.538G>T
  hgvsp: ENSP00000457195.1:p.Glu180Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.750G>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu180Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-25571776-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571776
    reference: chr 1
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.109A>T
  hgvsp: ENSP00000454463.1:p.Leu37Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.537A>T
  hgvsp: ENSP00000457195.1:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.214A>T
  hgvsp: ENSP00000455127.1:p.Leu72Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.43A>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.201A>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.537A>T
  hgvsp: ENSP00000457582.1:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.537A>T
  hgvsp: ENSP00000243189.7:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.516A>T
  hgvsp: ENSP00000411631.2:p.Leu172Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.749A>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.537A>T
  hgvsp: ENSP00000391510.2:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.284A>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu179Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-25571781-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571781
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571781
    reference: chr 1
allele count: 2
allele frequency: 1.656808655168415e-5
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.104C>G
  hgvsp: ENSP00000454463.1:p.Leu36Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.196C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.532C>G
  hgvsp: ENSP00000457582.1:p.Leu178Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.532C>G
  hgvsp: ENSP00000391510.2:p.Leu178Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.279C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.511C>G
  hgvsp: ENSP00000411631.2:p.Leu171Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.209C>G
  hgvsp: ENSP00000455127.1:p.Leu71Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.744C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.38C>G
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.532C>G
  hgvsp: ENSP00000243189.7:p.Leu178Val
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.532C>G
  hgvsp: ENSP00000457195.1:p.Leu178Val
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu178Val
num of homozygotes: 1
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-25571782-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571781
    reference: chr 1
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.509delA
  hgvsp: ENSP00000411631.2:p.Glu170GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.530delA
  hgvsp: ENSP00000243189.7:p.Glu177GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.530delA
  hgvsp: ENSP00000391510.2:p.Glu177GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.102delA
  hgvsp: ENSP00000454463.1:p.Glu35GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.277delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.530delA
  hgvsp: ENSP00000457582.1:p.Glu177GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.207delA
  hgvsp: ENSP00000455127.1:p.Glu70GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.530delA
  hgvsp: ENSP00000457195.1:p.Glu177GlyfsTer3
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.36delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.194delA
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.742delA
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu177GlyfsTer3
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

1-25571790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571790
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571790
    reference: chr 1
allele count: 1
allele frequency: 8.373245805003851e-6
allele num: 119428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.502C>T
  hgvsp: ENSP00000411631.2:p.Arg168Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.95C>T
  hgvsp: ENSP00000454463.1:p.Arg33Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.270C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.523C>T
  hgvsp: ENSP00000391510.2:p.Arg175Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.523C>T
  hgvsp: ENSP00000243189.7:p.Arg175Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.187C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.523C>T
  hgvsp: ENSP00000457582.1:p.Arg175Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.735C>T
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.200C>T
  hgvsp: ENSP00000455127.1:p.Arg68Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.523C>T
  hgvsp: ENSP00000457195.1:p.Arg175Ter
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.29C>T
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg175Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

1-25571794-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571795
    reference: chr 1
allele count: 367
allele frequency: 3.827940839017877e-3
allele num: 95874
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-3dupT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-3dupT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
hgvs: c.521-3dupT
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-25571794-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571793
    reference: chr 1
allele count: 3033
allele frequency: 3.163527129357281e-2
allele num: 95874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-3delT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-3delT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.25e1
  variant carriers: 555
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.75e1
  variant carriers: 777
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 5.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 167
genotype quality: GenotypeQuality
hgvs: c.521-3delT
num of homozygotes: 3
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: TA
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

1-25571794-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571794
    reference: chr 1
allele count: 2
allele frequency: 2.0860713019171e-5
allele num: 95874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-2A>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-2A>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.521-2A>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-25571794-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571792
    reference: chr 1
allele count: 17
allele frequency: 1.773160606629535e-4
allele num: 95874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-4_198-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-4_268-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-4_500-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-4_521-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-4_521-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-4_93-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-4_521-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-4_733-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-4_27-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-4_521-3delTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-4_185-3delTT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.521-4_521-3delTT
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: TAA
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-25571795-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571795
    reference: chr 1
allele count: 15
allele frequency: 1.774517922631018e-4
allele num: 84530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-3T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-3T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.521-3T>C
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-25571801-AAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571797
    reference: chr 1
allele count: 6
allele frequency: 5.14517982403485e-5
allele num: 116614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-13_268-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-13_521-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-13_521-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-13_500-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-13_198-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-13_27-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-13_93-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-13_185-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-13_733-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-13_521-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-13_521-10delCTTT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AAAAG
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

1-25571802-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571802
    reference: chr 1
allele count: 12
allele frequency: 1.032666689614815e-4
allele num: 116204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-10T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-10T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-25571802-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571799
    reference: chr 1
allele count: 3
allele frequency: 2.581666724037038e-5
allele num: 116204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000391510
  ensembl transcript: ENST00000431849
  gene symbol: C1orf63
  hgvsc: ENST00000431849.2:c.521-13_521-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000411631
  ensembl transcript: ENST00000417642
  gene symbol: C1orf63
  hgvsc: ENST00000417642.2:c.500-13_500-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000455127
  ensembl transcript: ENST00000565733
  gene symbol: C1orf63
  hgvsc: ENST00000565733.1:c.198-13_198-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-13_733-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000570063
  gene symbol: C1orf63
  hgvsc: ENST00000570063.1:n.185-13_185-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457582
  ensembl transcript: ENST00000473314
  gene symbol: C1orf63
  hgvsc: ENST00000473314.2:c.521-13_521-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-13_521-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000454463
  ensembl transcript: ENST00000566395
  gene symbol: C1orf63
  hgvsc: ENST00000566395.1:c.93-13_93-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000475766
  gene symbol: C1orf63
  hgvsc: ENST00000475766.2:n.27-13_27-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000243189
  ensembl transcript: ENST00000243189
  gene symbol: C1orf63
  hgvsc: ENST00000243189.7:c.521-13_521-11delCTT
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000568212
  gene symbol: C1orf63
  hgvsc: ENST00000568212.1:n.268-13_268-11delCTT
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: AAAG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-25571803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25571803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 25571803
    reference: chr 1
allele count: 38
allele frequency: 3.272814965377063e-4
allele num: 116108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl protein: ENSP00000457195
  ensembl transcript: ENST00000568254
  gene symbol: C1orf63
  hgvsc: ENST00000568254.1:c.521-11T>C
  variant of: http://identifiers.org/hgnc/25234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117616
  ensembl transcript: ENST00000498238
  gene symbol: C1orf63
  hgvsc: ENST00000498238.1:n.733-11T>C
  variant of: http://identifiers.org/hgnc/25234
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.67e0

DP
type: SiteQuality
SIO_000300: 1.96761e5

QD
type: SiteQuality
SIO_000300: 1.04e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.665245202558635e-4
allele num: 7504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.207e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.098e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

DP
type: SiteQuality
SIO_000300: 2.20082e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.668378576669112e-4
allele num: 2726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.944e-1

FS
type: SiteQuality
SIO_000300: 1.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

DP
type: SiteQuality
SIO_000300: 2.20118e5

QD
type: SiteQuality
SIO_000300: 8.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.304e0

GenotypeDepth
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.8005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.63e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

DP
type: SiteQuality
SIO_000300: 2.20086e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.846e0

VQSLOD
type: SiteQuality
SIO_000300: -4.113e0

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

GenotypeDepth
all individuals: 558
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6243
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.081284279287607e-5
allele num: 64908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.656097e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeDepth
all individuals: 261
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30667
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6252
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531346666258308e-5
allele num: 65302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.686e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.724648e6

GenotypeDepth
all individuals: 305
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7718
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.466e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 2.481e0

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.734439e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1234
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043213633597079e-5
allele num: 65720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 1.741542e6

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

QD
type: SiteQuality
SIO_000300: 1.618e1

GenotypeDepth
all individuals: 2022
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 558
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433978337592795e-4
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.504e0

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 1.743732e6

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32526
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744287458573173e-4
allele num: 11466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.752697e6

FS
type: SiteQuality
SIO_000300: 2.988e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.488e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.332e1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

GenotypeDepth
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32764
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.755688e6

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

FS
type: SiteQuality
SIO_000300: 3.085e0

QD
type: SiteQuality
SIO_000300: 1.635e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

GenotypeDepth
all individuals: 3944
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.755688e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

FS
type: SiteQuality
SIO_000300: 3.085e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeDepth
all individuals: 59
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214771622934888e-4
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.756489e6

MQRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 2.284e0

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeDepth
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.756489e6

MQRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 2.284e0

QD
type: SiteQuality
SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6266
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.960153123368715e-4
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.7592e6

QD
type: SiteQuality
SIO_000300: 1.508e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.368e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeDepth
all individuals: 18211
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 1.814e0

DP
type: SiteQuality
SIO_000300: 1.760626e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.971e0

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeDepth
all individuals: 9241
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.604e0

FS
type: SiteQuality
SIO_000300: 7.362e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.558e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
SIO_000300: 1.764693e6

GenotypeDepth
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7938
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.191e0

FS
type: SiteQuality
SIO_000300: 7.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

DP
type: SiteQuality
SIO_000300: 1.767766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeDepth
all individuals: 9272
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

DP
type: SiteQuality
SIO_000300: 1.768866e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.436e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

GenotypeDepth
all individuals: 1239
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7946
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.267e0

QD
type: SiteQuality
SIO_000300: 1.276e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.823e0

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.769156e6

GenotypeDepth
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7946
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

FS
type: SiteQuality
SIO_000300: 6.522e0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.163e0

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

DP
type: SiteQuality
SIO_000300: 1.769532e6

GenotypeDepth
all individuals: 375
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.376e0

DP
type: SiteQuality
SIO_000300: 1.770183e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

FS
type: SiteQuality
SIO_000300: 4.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.09e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 6.479e0

DP
type: SiteQuality
SIO_000300: 1.770179e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeDepth
all individuals: 184
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3961
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33652
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6271
bin: 9.75e1
variant carriers: 10

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996282304970918e-5
allele num: 66708
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.770943e6

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 59
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 153
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 59
allele frequency: 6.819232547387887e-3
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 1.776754e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.63e-2

FS
type: SiteQuality
SIO_000300: 1.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.884e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.078e1

GenotypeDepth
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33674
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.257e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.337e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -2.549e0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
type: SiteQuality
SIO_000300: 1.771466e6

FS
type: SiteQuality
SIO_000300: 1.2616e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeDepth
all individuals: 235
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1239
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18456
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 376
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.771671e6

FS
type: SiteQuality
SIO_000300: 1.914e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.297e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.537e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeDepth
all individuals: 153
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 753
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3960
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.356999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.771665e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.161e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.832e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.771743e6

VQSLOD
type: SiteQuality
SIO_000300: -4.316e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.803e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.262e1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeDepth
all individuals: 2038
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6265
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 33698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.869e1

FS
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

DP
type: SiteQuality
SIO_000300: 1.771937e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeDepth
all individuals: 61
bin: 9.25e1
variant carriers: 3

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6287
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.884615384615385e-3
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.438e1

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

DP
type: SiteQuality
SIO_000300: 1.774907e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3961
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33706
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: -3.391e0

FS
type: SiteQuality
SIO_000300: 1.024e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.772311e6

QD
type: SiteQuality
SIO_000300: 1.439e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.706e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeDepth
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

FS
type: SiteQuality
SIO_000300: 2.476e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 1.772347e6

GenotypeDepth
all individuals: 1239
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 263
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6262
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.772336e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

QD
type: SiteQuality
SIO_000300: 9.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

FS
type: SiteQuality
SIO_000300: 5.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1240
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3960
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

DP
type: SiteQuality
SIO_000300: 1.772849e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2039
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22886
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3960
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

MQRankSum
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.772849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeDepth
all individuals: 263
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 561
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028467595396729e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.77275e6

GenotypeDepth
all individuals: 1240
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22882
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3963
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 4.591e0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

DP
type: SiteQuality
SIO_000300: 1.772285e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeDepth
all individuals: 755
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1240
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33699
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.772373e6

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 5.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeDepth
all individuals: 9291
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 755
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2041
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

DP
type: SiteQuality
SIO_000300: 1.772378e6

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.208e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18490
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.805e-1

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

FS
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.772299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.227e0

MQRankSum
type: SiteQuality
SIO_000300: -1.681e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

GenotypeDepth
all individuals: 562
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.772477e6

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.87e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

FS
type: SiteQuality
SIO_000300: 2.902e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeDepth
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 1.773109e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.16e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 2.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.343e0

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.992e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 1.772233e6

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.742e1

GenotypeDepth
all individuals: 1240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.885725278953444e-4
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 1.771852e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeDepth
all individuals: 115
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 1.771811e6

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.28e0

FS
type: SiteQuality
SIO_000300: 1.0456e1

QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

GenotypeDepth
all individuals: 1241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6262
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.771938e6

QD
type: SiteQuality
SIO_000300: 1.221e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.194e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.299e0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeDepth
all individuals: 264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.028e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 1.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e-1

DP
type: SiteQuality
SIO_000300: 1.771721e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 18507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498155756139982e-5
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 1.771377e6

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.771042e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

MQ
type: SiteQuality
SIO_000300: 6.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.63e-1

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.770194e6

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 4.218e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.343e0

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

DP
type: SiteQuality
SIO_000300: 1.770288e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 1.659e0

VQSLOD
type: SiteQuality
SIO_000300: -1.186e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.025e1

QD
type: SiteQuality
SIO_000300: 1.599e1

DP
type: SiteQuality
SIO_000300: 1.769737e6

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.238e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 1.767144e6

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6258
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

FS
type: SiteQuality
SIO_000300: 8.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.717e1

DP
type: SiteQuality
SIO_000300: 1.766677e6

GenotypeDepth
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3834
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6258
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.766601e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.392e-1

QD
type: SiteQuality
SIO_000300: 1.683e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

GenotypeDepth
all individuals: 2045
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6257
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7801
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.257e-1

QD
type: SiteQuality
SIO_000300: 1.752e1

FS
type: SiteQuality
SIO_000300: 4.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.74e-2

DP
type: SiteQuality
SIO_000300: 1.758937e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

GenotypeDepth
all individuals: 187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2818
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.757834e6

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

FS
type: SiteQuality
SIO_000300: 6.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.487e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.301e0

GenotypeDepth
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1021
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 566
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7427
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27068
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2233
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

QD
type: SiteQuality
SIO_000300: 6.2e0

FS
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 1.744903e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeDepth
all individuals: 428
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 147
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17412
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2958
bin: 2.75e1
variant carriers: 58

GenotypeQuality
all individuals: 5952
bin: 2.5e0
variant carriers: 84

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2303
bin: 7.5e0
variant carriers: 120

GenotypeQuality
all individuals: 2655
bin: 3.25e1
variant carriers: 42

GenotypeQuality
all individuals: 1813
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 2217
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 3750
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1939
bin: 1.25e1
variant carriers: 61

GenotypeQuality
all individuals: 2015
bin: 4.25e1
variant carriers: 30

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4908
bin: 2.25e1
variant carriers: 66

GenotypeQuality
all individuals: 1570
bin: 5.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1209
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1600
bin: 1.75e1
variant carriers: 71

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1366
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3836
bin: 9.75e1
variant carriers: 48

East Asian
type: Population
allele count: 21
allele frequency: 3.039073806078148e-3
allele num: 6910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 2.148050231328487e-3
allele num: 6052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 158
allele frequency: 3.00574515846745e-3
allele num: 52566
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 3.793975626580823e-3
allele num: 8698
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.396648044692737e-3
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.922207146087743e-3
allele num: 8844
num of homozygotes: 0

South Asian
type: Population
allele count: 124
allele frequency: 1.025810721376572e-2
allele num: 12088
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 2.065925e6

GenotypeDepth
all individuals: 3392
bin: 4.75e1
variant carriers: 321

GenotypeDepth
all individuals: 74
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 24

GenotypeQuality
all individuals: 1939
bin: 1.25e1
variant carriers: 322

GenotypeQuality
all individuals: 1570
bin: 5.25e1
variant carriers: 153

GenotypeQuality
all individuals: 4908
bin: 2.25e1
variant carriers: 300

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 53

GenotypeQuality
all individuals: 2958
bin: 2.75e1
variant carriers: 332

GenotypeQuality
all individuals: 1600
bin: 1.75e1
variant carriers: 309

GenotypeQuality
all individuals: 2303
bin: 7.5e0
variant carriers: 301

GenotypeQuality
all individuals: 1209
bin: 5.75e1
variant carriers: 131

GenotypeQuality
all individuals: 5952
bin: 2.5e0
variant carriers: 277

GenotypeQuality
all individuals: 1813
bin: 4.75e1
variant carriers: 190

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 65

GenotypeQuality
all individuals: 3836
bin: 9.75e1
variant carriers: 601

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 57

GenotypeQuality
all individuals: 17412
bin: 6.25e1
variant carriers: 120

GenotypeQuality
all individuals: 3750
bin: 6.75e1
variant carriers: 90

GenotypeQuality
all individuals: 2015
bin: 4.25e1
variant carriers: 243

GenotypeQuality
all individuals: 2217
bin: 3.75e1
variant carriers: 293

GenotypeQuality
all individuals: 2655
bin: 3.25e1
variant carriers: 294

GenotypeQuality
all individuals: 1366
bin: 7.25e1
variant carriers: 89

European (Finnish)
type: Population
allele count: 36
allele frequency: 5.948446794448116e-3
allele num: 6052
num of homozygotes: 0

East Asian
type: Population
allele count: 165
allele frequency: 2.387843704775687e-2
allele num: 6910
num of homozygotes: 0

South Asian
type: Population
allele count: 665
allele frequency: 5.50132362673726e-2
allele num: 12088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1507
allele frequency: 2.86687212266484e-2
allele num: 52566
num of homozygotes: 0

Other
type: Population
allele count: 16
allele frequency: 2.23463687150838e-2
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 365
allele frequency: 4.127091813658978e-2
allele num: 8844
num of homozygotes: 3

Latino
type: Population
allele count: 279
allele frequency: 3.207633938836514e-2
allele num: 8698
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 2.065925e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 17412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2015
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.804740706920823e-5
allele num: 52566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12088
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

DP
type: SiteQuality
SIO_000300: 2.065925e6

GenotypeDepth
all individuals: 5954
bin: 3.75e1
variant carriers: 6

GenotypeDepth
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3836
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2015
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4908
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1939
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2303
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2958
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.272667107875579e-5
allele num: 12088
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.261420171867933e-4
allele num: 8844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.149689583812371e-4
allele num: 8698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.473081459498535e-4
allele num: 52566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.99e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

DP
type: SiteQuality
SIO_000300: 2.065925e6

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

GenotypeDepth
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3059
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6762
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.961810096782631e-3
allele num: 7646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.788366e6

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

QD
type: SiteQuality
SIO_000300: 1.461e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4803
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3930
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 450
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.796945193171608e-4
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.236399604352127e-4
allele num: 16176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.14099946603009e-5
allele num: 63674
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.605e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.088e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.676e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.659333e6

FS
type: SiteQuality
SIO_000300: 9.419999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 6721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195786864931847e-5
allele num: 16140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.80538003249684e-4
allele num: 11078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.419065939263978e-4
allele num: 63422
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.387e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.645748e6

GenotypeQuality
all individuals: 1247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239157372986369e-4
allele num: 16140
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.645748e6