2-175689133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689133
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689133
    reference: chr 2
allele count: 1
allele frequency: 1.977222397975324e-5
allele num: 50576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.634+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.166+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.171+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.337+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.190+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.712+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.160+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.337+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.37+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*263+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.37+29G>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.563+29G>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-175689140-GAGACA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689140
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689135
    reference: chr 2
allele count: 4
allele frequency: 7.526153383005946e-5
allele num: 53148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.190+17_190+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.634+17_634+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.166+17_166+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.337+17_337+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.37+17_37+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.171+17_171+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.160+17_160+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.563+17_563+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.337+17_337+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.712+17_712+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*263+17_*263+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.37+17_37+21delTGTCT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9991
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: GAGACA
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175689154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689154
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689154
    reference: chr 2
allele count: 2
allele frequency: 3.330668798294697e-5
allele num: 60048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.171+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.634+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.166+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.337+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.712+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.337+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.563+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.190+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.160+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.37+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.37+8C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*263+8C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13210
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.712+8C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-175689178-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689178
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689178
    reference: chr 2
allele count: 1
allele frequency: 1.306608827449238e-5
allele num: 76534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.174G>T
  hgvsp: ENSP00000409798.1:p.Gln58His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.696G>T
  hgvsp: ENSP00000386741.3:p.Gln232His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.155G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*247G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.150G>T
  hgvsp: ENSP00000410496.1:p.Gln50His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.21G>T
  hgvsp: ENSP00000411911.1:p.Gln7His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.547G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.21G>T
  hgvsp: ENSP00000386322.2:p.Gln7His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.618G>T
  hgvsp: ENSP00000386470.3:p.Gln206His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.144G>T
  hgvsp: ENSP00000386469.1:p.Gln48His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.321G>T
  hgvsp: ENSP00000295497.7:p.Gln107His
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.321G>T
  hgvsp: ENSP00000392603.1:p.Gln107His
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20748
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22432
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln232His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

2-175689186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689186
    reference: chr 2
allele count: 1
allele frequency: 1.271358828315704e-5
allele num: 78656
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.136A>G
  hgvsp: ENSP00000386469.1:p.Ile46Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.610A>G
  hgvsp: ENSP00000386470.3:p.Ile204Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.166A>G
  hgvsp: ENSP00000409798.1:p.Ile56Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.142A>G
  hgvsp: ENSP00000410496.1:p.Ile48Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.313A>G
  hgvsp: ENSP00000295497.7:p.Ile105Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.688A>G
  hgvsp: ENSP00000386741.3:p.Ile230Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.313A>G
  hgvsp: ENSP00000392603.1:p.Ile105Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.539A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.147A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.13A>G
  hgvsp: ENSP00000411911.1:p.Ile5Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*239A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.13A>G
  hgvsp: ENSP00000386322.2:p.Ile5Val
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile230Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-175689189-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689189
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689189
    reference: chr 2
allele count: 1
allele frequency: 1.264894128361456e-5
allele num: 79058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.163C>G
  hgvsp: ENSP00000409798.1:p.Leu55Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.685C>G
  hgvsp: ENSP00000386741.3:p.Leu229Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.310C>G
  hgvsp: ENSP00000295497.7:p.Leu104Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*236C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.133C>G
  hgvsp: ENSP00000386469.1:p.Leu45Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.10C>G
  hgvsp: ENSP00000411911.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.139C>G
  hgvsp: ENSP00000410496.1:p.Leu47Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.607C>G
  hgvsp: ENSP00000386470.3:p.Leu203Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.144C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.10C>G
  hgvsp: ENSP00000386322.2:p.Leu4Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.536C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.310C>G
  hgvsp: ENSP00000392603.1:p.Leu104Val
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu229Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

2-175689246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689246
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689246
    reference: chr 2
allele count: 1
allele frequency: 1.551397809426293e-5
allele num: 64458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253G>A
  hgvsp: ENSP00000392603.1:p.Val85Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82G>A
  hgvsp: ENSP00000410496.1:p.Val28Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628G>A
  hgvsp: ENSP00000386741.3:p.Val210Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253G>A
  hgvsp: ENSP00000295497.7:p.Val85Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106G>A
  hgvsp: ENSP00000409798.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550G>A
  hgvsp: ENSP00000386470.3:p.Val184Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76G>A
  hgvsp: ENSP00000386469.1:p.Val26Met
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15902
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val210Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

2-175689249-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689250
    reference: chr 2
allele count: 4146
allele frequency: 1.490509059534081e-1
allele num: 27816
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-4dupT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-4dupT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.25e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 1.25e1
  variant carriers: 822
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 7.5e0
  variant carriers: 613
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
hgvs: c.628-4dupT
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-175689249-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689251
    reference: chr 2
allele count: 25
allele frequency: 8.987633016968651e-4
allele num: 27816
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-5_479-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-5_76-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-5_-48-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-5_550-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-5_82-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-5_628-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-5_-48-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-5_*179-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-5_87-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-5_253-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-5_253-4dupTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-5_106-4dupTT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: c.628-5_628-4dupTT
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

2-175689249-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689248
    reference: chr 2
allele count: 4881
allele frequency: 1.75474547023296e-1
allele num: 27816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-4delT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-4delT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 217
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 1.25e1
  variant carriers: 1445
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 964
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 7.5e0
  variant carriers: 657
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 320
genotype quality: GenotypeQuality
hgvs: c.628-4delT
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: GA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-175689249-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689247
    reference: chr 2
allele count: 136
allele frequency: 4.889272361230946e-3
allele num: 27816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-5_-48-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-5_82-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-5_253-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-5_76-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-5_-48-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-5_550-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-5_479-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-5_*179-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-5_87-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-5_253-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-5_106-4delTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-5_628-4delTT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 1.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
hgvs: c.628-5_628-4delTT
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: GAA
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-175689249-GAAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689245
    reference: chr 2
allele count: 6
allele frequency: 2.157031924072476e-4
allele num: 27816
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17519
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30417
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1396
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1434
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2576
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 6
  allele frequency: 9.230769230769231e-4
  allele num: 6500
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: GAAAA
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-175689254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689254
    reference: chr 2
allele count: 2
allele frequency: 3.588216297678424e-5
allele num: 55738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-8T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-8T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14585
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.628-8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-175689259-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689259
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689257
    reference: chr 2
allele count: 102
allele frequency: 2.066701787089192e-3
allele num: 49354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-15_253-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-15_-48-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-15_106-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-15_628-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-15_-48-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-15_253-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-15_87-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-15_550-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-15_*179-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-15_82-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-15_76-14delCT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-15_479-14delCT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21413
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 13612
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: AAG
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-175689260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689260
    reference: chr 2
allele count: 3
allele frequency: 6.291682395872656e-5
allele num: 47682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-14T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-14T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21486
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-175689261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689261
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689261
    reference: chr 2
allele count: 4
allele frequency: 8.756184054988836e-5
allele num: 45682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-15C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21581
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-175689265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689265
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689265
    reference: chr 2
allele count: 1
allele frequency: 2.325256940891969e-5
allele num: 43006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-19C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-19C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21706
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15920
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-175689291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689291
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689291
    reference: chr 2
allele count: 2
allele frequency: 6.983240223463687e-5
allele num: 28640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-45G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-45G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22917
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20909
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

2-175689293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175689293
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175689293
    reference: chr 2
allele count: 3
allele frequency: 1.067919692439129e-4
allele num: 28092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.253-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-48-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.628-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.87-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.76-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.253-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.82-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.479-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-48-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.106-47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*179-47C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-175711008-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711008
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711008
    reference: chr 2
allele count: 16
allele frequency: 1.303780964797914e-3
allele num: 12272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81+29A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+35A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21762A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+600A>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+600A>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

2-175711015-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711015
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711015
    reference: chr 2
allele count: 1
allele frequency: 7.7724234416291e-5
allele num: 12866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21769T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+28T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81+22T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+593T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+593T>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-175711016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711016
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711016
    reference: chr 2
allele count: 1
allele frequency: 7.74233508826262e-5
allele num: 12916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81+21T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+27T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21770T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+592T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+592T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-175711030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711030
    reference: chr 2
allele count: 1
allele frequency: 7.080147267063155e-5
allele num: 14124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+13G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81+7G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21784G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+578G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+578G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.81+7G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-175711036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711036
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711036
    reference: chr 2
allele count: 2
allele frequency: 1.362212232665849e-4
allele num: 14682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81+1G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+7G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+572G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21790G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.81+1G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

2-175711037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711037
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711037
    reference: chr 2
allele count: 1
allele frequency: 6.743088334457182e-5
allele num: 14830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.75+6C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21791C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+571C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.81C>T
  hgvsp: ENST00000413882.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+571C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.81C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-175711059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711059
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711059
    reference: chr 2
allele count: 1
allele frequency: 6.432522835456066e-5
allele num: 15546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.59G>A
  hgvsp: ENSP00000386469.1:p.Ser20Asn
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21813G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.59G>A
  hgvsp: ENSP00000410496.1:p.Ser20Asn
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+549G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+549G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser20Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

2-175711066-A-AGTGAGGAGAAGCTGCTAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711085
    reference: chr 2
allele count: 1
allele frequency: 6.40861317610869e-5
allele num: 15604
alternate allele: AGTGAGGAGAAGCTGCTAGT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsp: ENSP00000386469.1:p.Phe18ThrfsTer25
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsp: ENSP00000410496.1:p.Phe18ThrfsTer27
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe18ThrfsTer27
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-175711069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711069
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711069
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 15612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.49C>T
  hgvsp: ENSP00000386469.1:p.His17Tyr
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.49C>T
  hgvsp: ENSP00000410496.1:p.His17Tyr
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21823C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+539C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+539C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His17Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175711087-TCAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711087
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711084
    reference: chr 2
allele count: 1
allele frequency: 6.366993505666624e-5
allele num: 15706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.28_30delCTG
  hgvsp: ENSP00000386469.1:p.Leu10del
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+518_105+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+518_252+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+518_-49+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+518_478+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+518_627+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+518_86+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21844_550-21842delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+518_252+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+518_*178+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.28_30delCTG
  hgvsp: ENSP00000410496.1:p.Leu10del
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+518_-49+520delCTG
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+518_258+520delCTG
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu10del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: TCAG
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-175711108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711108
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711108
    reference: chr 2
allele count: 1
allele frequency: 6.385696040868455e-5
allele num: 15660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.10A>G
  hgvsp: ENSP00000410496.1:p.Met4Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.10A>G
  hgvsp: ENSP00000386469.1:p.Met4Val
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+500A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21862A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+500A>G
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met4Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-175711115-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711115
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711115
    reference: chr 2
allele count: 1
allele frequency: 6.407791874919902e-5
allele num: 15606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.3G>T
  hgvsp: ENSP00000386469.1:p.Met1?
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.3G>T
  hgvsp: ENSP00000410496.1:p.Met1?
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+493G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21869G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+493G>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

2-175711129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711129
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711129
    reference: chr 2
allele count: 1
allele frequency: 6.470816617057073e-5
allele num: 15454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21883G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+479G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+479G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-175711132-G-GGTCAATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711132
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711139
    reference: chr 2
allele count: 2
allele frequency: 1.295001295001295e-4
allele num: 15444
alternate allele: GGTCAATT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000410496
  ensembl transcript: ENST00000413882
  gene symbol: CHN1
  hgvsc: ENST00000413882.1:c.-22_-16dupAATTGAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386469
  ensembl transcript: ENST00000409597
  gene symbol: CHN1
  hgvsc: ENST00000409597.1:c.-16_-15insAATTGAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

2-175711156-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711156
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711156
    reference: chr 2
allele count: 1
allele frequency: 6.613756613756614e-5
allele num: 15120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21910T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+452T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+452T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-175711165-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711165
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711165
    reference: chr 2
allele count: 1
allele frequency: 6.716818914562064e-5
allele num: 14888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-21919T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+443T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+443T>G
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-175711573-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711573
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711573
    reference: chr 2
allele count: 1
allele frequency: 5.572272372673576e-5
allele num: 17946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.105+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22327C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*178+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-49+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.627+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-49+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.258+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.252+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.478+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.86+35C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.252+35C>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-175711630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711630
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711630
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.236A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-71A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*156A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.230A>G
  hgvsp: ENSP00000295497.7:p.Tyr77Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.456A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.605A>G
  hgvsp: ENSP00000386741.3:p.Tyr202Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-71A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.230A>G
  hgvsp: ENSP00000392603.1:p.Tyr77Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.83A>G
  hgvsp: ENSP00000409798.1:p.Tyr28Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.64A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22384A>G
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr202Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

2-175711646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711646
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711646
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.67G>A
  hgvsp: ENSP00000409798.1:p.Glu23Lys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-87G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.214G>A
  hgvsp: ENSP00000295497.7:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.220G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.589G>A
  hgvsp: ENSP00000386741.3:p.Glu197Lys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.440G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.48G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.214G>A
  hgvsp: ENSP00000392603.1:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-87G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22400G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.564G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu197Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

2-175711647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711647
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711647
    reference: chr 2
allele count: 27
allele frequency: 1.183380084151473e-3
allele num: 22816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.439C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.588C>T
  hgvsp: ENST00000409900.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.213C>T
  hgvsp: ENST00000444573.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*139C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.563C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.47C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22401C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.213C>T
  hgvsp: ENST00000295497.7:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-88C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.66C>T
  hgvsp: ENST00000443238.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-88C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.219C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32320
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Asn196Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-175711656-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711656
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711656
    reference: chr 2
allele count: 1
allele frequency: 4.366049598323437e-5
allele num: 22904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-97G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-97G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.204G>T
  hgvsp: ENST00000295497.7:c.204G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.210G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.204G>T
  hgvsp: ENST00000444573.1:c.204G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.38G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.57G>T
  hgvsp: ENST00000443238.1:c.57G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.430G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.579G>T
  hgvsp: ENST00000409900.3:c.579G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*130G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22410G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.554G>T
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu193Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

2-175711663-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711663
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711663
    reference: chr 2
allele count: 1
allele frequency: 4.349717268377556e-5
allele num: 22990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.31C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.50C>A
  hgvsp: ENSP00000409798.1:p.Ala17Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.572C>A
  hgvsp: ENSP00000386741.3:p.Ala191Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.197C>A
  hgvsp: ENSP00000392603.1:p.Ala66Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-104C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.197C>A
  hgvsp: ENSP00000295497.7:p.Ala66Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-104C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*123C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.203C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.423C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.547C>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22417C>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala191Glu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-175711690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711690
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711690
    reference: chr 2
allele count: 1
allele frequency: 4.34291670285764e-5
allele num: 23026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000485882
  gene symbol: CHN1
  hgvsc: ENST00000485882.1:n.4C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.170C>T
  hgvsp: ENSP00000295497.7:p.Ser57Leu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22444C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-5C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.170C>T
  hgvsp: ENSP00000392603.1:p.Ser57Leu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-5C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser57Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

2-175711723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711723
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711723
    reference: chr 2
allele count: 1
allele frequency: 4.445629945763315e-5
allele num: 22494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22477C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.137C>T
  hgvsp: ENSP00000295497.7:p.Thr46Ile
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-38C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.137C>T
  hgvsp: ENSP00000392603.1:p.Thr46Ile
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-38C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr46Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

2-175711731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711731
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711731
    reference: chr 2
allele count: 2
allele frequency: 8.961376467425397e-5
allele num: 22318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.129G>A
  hgvsp: ENST00000444573.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.129G>A
  hgvsp: ENST00000295497.7:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22485G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-46G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-46G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser43Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

2-175711809-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711809
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.51T>A
  hgvsp: ENST00000295497.7:c.51T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22563T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.51T>A
  hgvsp: ENST00000444573.1:c.51T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-124T>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-124T>A
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val17Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

2-175711825-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711825
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711825
    reference: chr 2
allele count: 1
allele frequency: 4.856254856254856e-5
allele num: 20592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.35C>G
  hgvsp: ENSP00000392603.1:p.Thr12Ser
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.35C>G
  hgvsp: ENSP00000295497.7:p.Thr12Ser
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-140C>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22579C>G
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr12Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-175711829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711829
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711829
    reference: chr 2
allele count: 1
allele frequency: 4.905808477237049e-5
allele num: 20384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.31A>G
  hgvsp: ENSP00000392603.1:p.Lys11Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22583A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-144A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.31A>G
  hgvsp: ENSP00000295497.7:p.Lys11Glu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-144A>G
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys11Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

2-175711837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711837
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711837
    reference: chr 2
allele count: 1
allele frequency: 5.025125628140704e-5
allele num: 19900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.23C>T
  hgvsp: ENSP00000392603.1:p.Ser8Leu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.23C>T
  hgvsp: ENSP00000295497.7:p.Ser8Leu
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22591C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-152C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-152C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3692
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser8Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/2-175711839-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711839
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711839
    reference: chr 2
allele count: 1
allele frequency: 5.057657293141817e-5
allele num: 19772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.21G>T
  hgvsp: ENSP00000295497.7:p.Trp7Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.21G>T
  hgvsp: ENSP00000392603.1:p.Trp7Cys
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-126-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22593G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-154G>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-126-154G>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp7Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-175711874-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711874
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711874
    reference: chr 2
allele count: 1
allele frequency: 5.934718100890208e-5
allele num: 16850
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22628C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.-15C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-127+167C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-189C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-127+167C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

2-175711879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711879
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711879
    reference: chr 2
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-194C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-194C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.-20C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-127+162C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-127+162C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-194C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22633C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-194C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-194C>T
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-194C>T
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-175711883-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175711883
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175711883
    reference: chr 2
allele count: 1
allele frequency: 6.211180124223603e-5
allele num: 16100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000392603
  ensembl transcript: ENST00000444573
  gene symbol: CHN1
  hgvsc: ENST00000444573.1:c.-24T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-22637T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000295497
  ensembl transcript: ENST00000295497
  gene symbol: CHN1
  hgvsc: ENST00000295497.7:c.-24T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386322
  ensembl transcript: ENST00000409089
  gene symbol: CHN1
  hgvsc: ENST00000409089.2:c.-127+158T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-198T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-198T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-198T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-198T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-198T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000411911
  ensembl transcript: ENST00000444394
  gene symbol: CHN1
  hgvsc: ENST00000444394.1:c.-127+158T>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.28-198T>G
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-175712401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712401
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712401
    reference: chr 2
allele count: 3
allele frequency: 1.819725827975252e-4
allele num: 16486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-716T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.27+46T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-716T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-716T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-716T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23155T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-716T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-175712419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712419
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712419
    reference: chr 2
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-734A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-734A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-734A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-734A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.27+28A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23173A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-734A>G
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

2-175712448-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712448
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712449
    reference: chr 2
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-764dupA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.25dupA
  hgvsp: ENSP00000409798.1:p.Arg9LysfsTer7
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-764dupA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-764dupA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-764dupA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-764dupA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23203dupA
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg9LysfsTer7
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-175712454-C-CTGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712458
    reference: chr 2
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
alternate allele: CTGTT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.16_19dupAACA
  hgvsp: ENSP00000409798.1:p.Arg7LysfsTer10
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-773_401-770dupAACA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23212_550-23209dupAACA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-773_181-770dupAACA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-773_525-770dupAACA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-773_*101-770dupAACA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-773_550-770dupAACA
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg7LysfsTer10
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

2-175712454-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712452
    reference: chr 2
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23210_550-23209delCA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-771_181-770delCA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.18_19delCA
  hgvsp: ENSP00000409798.1:p.Asn6LysfsTer9
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-771_401-770delCA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-771_*101-770delCA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-771_550-770delCA
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-771_525-770delCA
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn6LysfsTer9
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: CTG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-175712457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712457
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712457
    reference: chr 2
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-772A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-772A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-772A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-772A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23211A>G
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.17A>G
  hgvsp: ENSP00000409798.1:p.Asn6Ser
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-772A>G
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn6Ser
num of homozygotes: 1
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

2-175712473-T-TGTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712477
    reference: chr 2
allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
alternate allele: TGTAA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.-4_-1dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-792_401-789dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-792_*101-789dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-792_525-789dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-792_550-789dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23231_550-23228dupTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-792_181-789dupTTAC
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

2-175712473-TGTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712469
    reference: chr 2
allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-792_*101-789delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-792_181-789delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-792_401-789delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23231_550-23228delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.-4_-1delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-792_550-789delTTAC
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-792_525-789delTTAC
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: TGTAA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

2-175712477-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712477
    reference: chr 2
allele count: 7
allele frequency: 4.262574595055413e-4
allele num: 16422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000409798
  ensembl transcript: ENST00000443238
  gene symbol: CHN1
  hgvsc: ENST00000443238.1:c.-4T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-792T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-792T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-792T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-792T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23231T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-792T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

2-175712494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712494
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712494
    reference: chr 2
allele count: 8
allele frequency: 5.797101449275362e-4
allele num: 13800
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-809G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-809G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23248G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-809G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-809G>A
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-809G>A
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-175712501-CAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712497
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 7780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-820_401-817delTTTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-820_550-817delTTTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23259_550-23256delTTTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-820_*101-817delTTTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-820_525-817delTTTT
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-820_181-817delTTTT
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: CAAAA
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-175712501-CAAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712496
    reference: chr 2
allele count: 3
allele frequency: 3.856041131105399e-4
allele num: 7780
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 156
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2274
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 88
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 3
  allele frequency: 5.555555555555555e-2
  allele num: 54
  num of homozygotes: 0
population: South Asian
population: Other
population: African
reference allele: CAAAAA
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/2-175712501-CAAAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712495
    reference: chr 2
allele count: 6
allele frequency: 7.712082262210797e-4
allele num: 7780
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 6
  allele frequency: 1.111111111111111e-1
  allele num: 54
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 88
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2274
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 84
  num of homozygotes: 0
population: East Asian
population: South Asian
population: African
reference allele: CAAAAAA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-175712501-CAAAAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712494
    reference: chr 2
allele count: 1
allele frequency: 1.285347043701799e-4
allele num: 7780
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 88
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5004
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 156
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2274
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
reference allele: CAAAAAAA
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-175712501-CAAAAAAAAAAAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712487
    reference: chr 2
allele count: 2
allele frequency: 2.570694087403599e-4
allele num: 7780
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 54
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 3.996802557953637e-4
  allele num: 5004
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 120
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 156
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: CAAAAAAAAAAAAAA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/2-175712501-CAAAAAAAAAAAAAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712486
    reference: chr 2
allele count: 3
allele frequency: 3.856041131105399e-4
allele num: 7780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: CAAAAAAAAAAAAAAA
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-175712509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175712509
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175712509
    reference: chr 2
allele count: 1
allele frequency: 6.406149903907751e-5
allele num: 15610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000481174
  gene symbol: CHN1
  hgvsc: ENST00000481174.1:n.181-824T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000490654
  gene symbol: CHN1
  hgvsc: ENST00000490654.1:n.525-824T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl transcript: ENST00000488080
  gene symbol: CHN1
  hgvsc: ENST00000488080.1:n.401-824T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386741
  ensembl transcript: ENST00000409900
  gene symbol: CHN1
  hgvsc: ENST00000409900.3:c.550-824T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000386470
  ensembl transcript: ENST00000409156
  gene symbol: CHN1
  hgvsc: ENST00000409156.3:c.550-23263T>C
  variant of: http://identifiers.org/hgnc/1943
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128656
  ensembl protein: ENSP00000405270
  ensembl transcript: ENST00000425395
  gene symbol: CHN1
  hgvsc: ENST00000425395.1:c.*101-824T>C
  variant of: http://identifiers.org/hgnc/1943
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1791
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.636892638929299e-5
allele num: 27496
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

DP
type: SiteQuality
SIO_000300: 8.8249e5

FS
type: SiteQuality
SIO_000300: 1.208e0

QD
type: SiteQuality
SIO_000300: 1.661e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeDepth
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.376936316695353e-4
allele num: 29050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e0

DP
type: SiteQuality
SIO_000300: 9.22224e5

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 7.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQ
type: SiteQuality
SIO_000300: 5.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeDepth
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2646
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.408477842003854e-4
allele num: 4152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.035638394754417e-5
allele num: 32942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.4e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.292e0

DP
type: SiteQuality
SIO_000300: 1.005086e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

GenotypeDepth
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.772421127259837e-4
allele num: 5642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.212e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 2.494e0

QD
type: SiteQuality
SIO_000300: 4.6e-1

DP
type: SiteQuality
SIO_000300: 1.15811e6

GenotypeDepth
all individuals: 1694
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22586
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.281750559028887e-5
allele num: 43826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.435e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.164857e6

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

FS
type: SiteQuality
SIO_000300: 4.924e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeDepth
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 947
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 459
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.699524133242692e-4
allele num: 5884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.164536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 1.562e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

GenotypeDepth
all individuals: 1597
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 113
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8913
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6613
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.804577069777878e-5
allele num: 35656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

QD
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQ
type: SiteQuality
SIO_000300: 6.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.22e0

DP
type: SiteQuality
SIO_000300: 9.78594e5

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

GenotypeDepth
all individuals: 732
bin: 4.25e1
variant carriers: 233

GenotypeDepth
all individuals: 507
bin: 7.75e1
variant carriers: 244

GenotypeDepth
all individuals: 722
bin: 4.75e1
variant carriers: 279

GenotypeDepth
all individuals: 820
bin: 5.25e1
variant carriers: 354

GenotypeQuality
all individuals: 1105
bin: 2.75e1
variant carriers: 178

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 189

GenotypeQuality
all individuals: 2421
bin: 9.75e1
variant carriers: 1351

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 160

GenotypeQuality
all individuals: 6091
bin: 2.25e1
variant carriers: 209

GenotypeQuality
all individuals: 30417
bin: 2.5e0
variant carriers: 136

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 331

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 119

GenotypeQuality
all individuals: 2180
bin: 1.75e1
variant carriers: 192

GenotypeQuality
all individuals: 2204
bin: 1.25e1
variant carriers: 184

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 192

GenotypeQuality
all individuals: 6215
bin: 7.5e0
variant carriers: 188

GenotypeQuality
all individuals: 894
bin: 4.25e1
variant carriers: 299

GenotypeQuality
all individuals: 993
bin: 6.25e1
variant carriers: 274

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 361

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 280

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 270

GenotypeQuality
all individuals: 973
bin: 3.25e1
variant carriers: 241

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 166

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 103

East Asian
type: Population
allele count: 132
allele frequency: 9.205020920502092e-2
allele num: 1434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 42
allele frequency: 2.723735408560311e-2
allele num: 1542
num of homozygotes: 0

African
type: Population
allele count: 416
allele frequency: 1.614906832298137e-1
allele num: 2576
num of homozygotes: 0

Other
type: Population
allele count: 40
allele frequency: 1.587301587301587e-1
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1377
allele frequency: 9.754888070274866e-2
allele num: 14116
num of homozygotes: 0

South Asian
type: Population
allele count: 2000
allele frequency: 3.076923076923077e-1
allele num: 6500
num of homozygotes: 0

Latino
type: Population
allele count: 139
allele frequency: 9.95702005730659e-2
allele num: 1396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 1.115075e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.351e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.55e0

GenotypeDepth
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 881
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2204
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6091
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6215
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 30417
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 973
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2421
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 993
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2180
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.076923076923077e-3
allele num: 6500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.973500697350069e-4
allele num: 1434
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.329192546583851e-3
allele num: 2576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.163323782234957e-4
allele num: 1396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 7.084159818645508e-4
allele num: 14116
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.115075e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.351e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

GenotypeDepth
all individuals: 507
bin: 7.75e1
variant carriers: 120

GenotypeDepth
all individuals: 325
bin: 8.25e1
variant carriers: 57

GenotypeDepth
all individuals: 878
bin: 5.75e1
variant carriers: 214

GenotypeDepth
all individuals: 881
bin: 6.25e1
variant carriers: 201

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 324

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 195

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 484

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 494

GenotypeQuality
all individuals: 2180
bin: 1.75e1
variant carriers: 203

GenotypeQuality
all individuals: 1105
bin: 2.75e1
variant carriers: 250

GenotypeQuality
all individuals: 30417
bin: 2.5e0
variant carriers: 147

GenotypeQuality
all individuals: 6215
bin: 7.5e0
variant carriers: 239

GenotypeQuality
all individuals: 894
bin: 4.25e1
variant carriers: 405

GenotypeQuality
all individuals: 993
bin: 6.25e1
variant carriers: 459

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 190

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 335

GenotypeQuality
all individuals: 6091
bin: 2.25e1
variant carriers: 235

GenotypeQuality
all individuals: 2204
bin: 1.25e1
variant carriers: 206

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 194

GenotypeQuality
all individuals: 973
bin: 3.25e1
variant carriers: 254

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 175

GenotypeQuality
all individuals: 2421
bin: 9.75e1
variant carriers: 976

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 462

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 100

European (Non-Finnish)
type: Population
allele count: 2926
allele frequency: 2.072825162935676e-1
allele num: 14116
num of homozygotes: 0

Latino
type: Population
allele count: 290
allele frequency: 2.077363896848138e-1
allele num: 1396
num of homozygotes: 0

Other
type: Population
allele count: 41
allele frequency: 1.626984126984127e-1
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 673
allele frequency: 1.035384615384615e-1
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 418
allele frequency: 1.622670807453416e-1
allele num: 2576
num of homozygotes: 0

East Asian
type: Population
allele count: 317
allele frequency: 2.210599721059972e-1
allele num: 1434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 216
allele frequency: 1.400778210116732e-1
allele num: 1542
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.115075e6

QD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.351e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeDepth
all individuals: 626
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 820
bin: 5.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1193
bin: 2.75e1
variant carriers: 14

GenotypeDepth
all individuals: 777
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 990
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 30417
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 2180
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 952
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2204
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 888
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 894
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1105
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6215
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 2421
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 24

GenotypeQuality
all individuals: 605
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 973
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 993
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 18

South Asian
type: Population
allele count: 11
allele frequency: 1.692307692307692e-3
allele num: 6500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 5.046583850931677e-3
allele num: 2576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 5.188067444876783e-3
allele num: 1542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 81
allele frequency: 5.738169453102862e-3
allele num: 14116
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 7.670850767085077e-3
allele num: 1434
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 8.595988538681949e-3
allele num: 1396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.115075e6

QD
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.351e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.351e-1

QD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.115075e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

GenotypeDepth
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9586
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.656108597285068e-4
allele num: 3536
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.344e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 4.781e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.34961e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeDepth
all individuals: 733
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1686
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2304
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 651
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1202
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 24737
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2232
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 769
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 670
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1210
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 711
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2934
bin: 9.75e1
variant carriers: 105

GenotypeQuality
all individuals: 3053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13041
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.662835249042145e-5
allele num: 26100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 94
allele frequency: 2.101967799642218e-2
allele num: 4472
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 2.054794520547945e-3
allele num: 2920
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.93868e5

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeDepth
all individuals: 240
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2829
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.191137933772731e-4
allele num: 25186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.655e-1

FS
type: SiteQuality
SIO_000300: 2.566e0

QD
type: SiteQuality
SIO_000300: 9.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.121e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 7.8922e5

GenotypeDepth
all individuals: 148
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2354
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3086
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2327
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24760
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.885003885003885e-4
allele num: 2574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24074
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.128668171557562e-3
allele num: 2658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.86364e5

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 5.45e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 6.89e0

GenotypeDepth
all individuals: 227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16269
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.116569897275569e-4
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.580000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.351e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

DP
type: SiteQuality
SIO_000300: 7.37854e5

GenotypeDepth
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7643
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 7.530120481927711e-4
allele num: 2656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 6.32581e5

QD
type: SiteQuality
SIO_000300: 1.764e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.939000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7709
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7789
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2781
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19825
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.707365299060801e-4
allele num: 8092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.147e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.061e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 6.29745e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-2

GenotypeDepth
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 65
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.949860724233983e-2
allele num: 718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1574
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 9.433962264150943e-3
allele num: 212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.274e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 1.98692e5

FS
type: SiteQuality
SIO_000300: 1.254e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.366120218579235e-3
allele num: 732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

FS
type: SiteQuality
SIO_000300: 1.741e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

DP
type: SiteQuality
SIO_000300: 2.09862e5

GenotypeDepth
all individuals: 1694
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.349624060150376e-4
allele num: 4256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 6.576e0

DP
type: SiteQuality
SIO_000300: 2.11119e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeDepth
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.574803149606299e-4
allele num: 6350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.448e1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 2.30126e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.184e0

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.134927412467976e-4
allele num: 4684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.322751322751323e-3
allele num: 756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.984e0

QD
type: SiteQuality
SIO_000300: 9.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.38021e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: -5.175e-1

GenotypeDepth
all individuals: 81
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1056
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.123142250530786e-4
allele num: 4710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 1.841e0

DP
type: SiteQuality
SIO_000300: 2.39578e5

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -1.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.123e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.572e0

GenotypeDepth
all individuals: 296
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4645
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.514e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.74e-2

DP
type: SiteQuality
SIO_000300: 2.48083e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.147e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5455
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.312335958005249e-3
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.09e0

MQ
type: SiteQuality
SIO_000300: 5.14e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.191e0

MQRankSum
type: SiteQuality
SIO_000300: -8.788e0

DP
type: SiteQuality
SIO_000300: 2.48679e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.828e0

FS
type: SiteQuality
SIO_000300: 1.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

DP
type: SiteQuality
SIO_000300: 2.49132e5

VQSLOD
type: SiteQuality
SIO_000300: -2.232e0

QD
type: SiteQuality
SIO_000300: 4.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.132231404958678e-3
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.844e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

QD
type: SiteQuality
SIO_000300: 1.731e1

FS
type: SiteQuality
SIO_000300: 4.841e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.025e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 2.50325e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4950
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.278772378516624e-3
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.56e-2

FS
type: SiteQuality
SIO_000300: 1.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.85e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 9.0e0

DP
type: SiteQuality
SIO_000300: 2.48621e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeDepth
all individuals: 99
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.025931928687196e-4
allele num: 4936
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.193e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

MQRankSum
type: SiteQuality
SIO_000300: -1.317e0

DP
type: SiteQuality
SIO_000300: 2.46988e5

GenotypeDepth
all individuals: 295
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1563
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.378169790518192e-4
allele num: 7256
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

MQ
type: SiteQuality
SIO_000300: 5.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.138e0

DP
type: SiteQuality
SIO_000300: 2.4041e5

FS
type: SiteQuality
SIO_000300: 1.417e0

QD
type: SiteQuality
SIO_000300: 1.643e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeDepth
all individuals: 88
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 4.098360655737705e-3
allele num: 244
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.269035532994924e-3
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

DP
type: SiteQuality
SIO_000300: 2.38225e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 9.736000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.971e0

QD
type: SiteQuality
SIO_000300: 6.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.432e1

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1205
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4812
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.585e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.813e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.237e0

QD
type: SiteQuality
SIO_000300: 9.1e0

DP
type: SiteQuality
SIO_000300: 2.19587e5

GenotypeQuality
all individuals: 968
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.288659793814433e-3
allele num: 776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.455e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 2.18221e5

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6227
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17637
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.883948756593821e-4
allele num: 5308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.68873e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.79e-2

QD
type: SiteQuality
SIO_000300: 8.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.256e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 431
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30798
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8663
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.728e1

VQSLOD
type: SiteQuality
SIO_000300: -6.977e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.431e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 3.9451e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeDepth
all individuals: 2738
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30525
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.636e0

FS
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 5.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.122e5

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeDepth
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 457
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30691
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7382
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.405286343612335e-4
allele num: 2270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.252252252252252e-3
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 2.590136759220887e-3
allele num: 9652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.419999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.15674e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30375
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1767
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.027960526315789e-4
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.320000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.18947e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 4.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.52e0

GenotypeDepth
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8808
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.466275659824047e-3
allele num: 682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.656e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.201e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.561e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.21682e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 1.377e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8741
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.018537380321858e-4
allele num: 9818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 6.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

DP
type: SiteQuality
SIO_000300: 4.08845e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.387e-1

GenotypeQuality
all individuals: 308
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26923
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.05999576001696e-4
allele num: 9434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

DP
type: SiteQuality
SIO_000300: 3.61717e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.277e0

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

FS
type: SiteQuality
SIO_000300: 1.589e0

QD
type: SiteQuality
SIO_000300: 1.08e1

MQ
type: SiteQuality
SIO_000300: 5.902e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.26e-2

GenotypeQuality
all individuals: 257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.074806534823732e-4
allele num: 9304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262626262626263e-4
allele num: 7920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 3.49628e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.27e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.13e1

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5542
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.85e0

DP
type: SiteQuality
SIO_000300: 2.78916e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 725
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.507e0

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 8.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

DP
type: SiteQuality
SIO_000300: 2.68077e5

MQ
type: SiteQuality
SIO_000300: 5.814e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.258811681772407e-4
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.64662e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e0

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 8.653e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.090133982947625e-4
allele num: 1642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.59615e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.678e1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 7.465e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

GenotypeQuality
all individuals: 1708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.180469715698393e-4
allele num: 1618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

FS
type: SiteQuality
SIO_000300: 8.805999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.697e1

DP
type: SiteQuality
SIO_000300: 2.58162e5

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.22543352601156e-4
allele num: 1384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.037e0

DP
type: SiteQuality
SIO_000300: 2.01917e5

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.067961165048543e-4
allele num: 1648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.002e0

MQRankSum
type: SiteQuality
SIO_000300: -3.92e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.9247e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.597e-1

FS
type: SiteQuality
SIO_000300: 3.996e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.529e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608751608751609e-4
allele num: 6216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 7.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.85306e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.439e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 1649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.854140914709518e-3
allele num: 1618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.239e1

FS
type: SiteQuality
SIO_000300: 2.332e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.042e0

DP
type: SiteQuality
SIO_000300: 3.76854e5

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.655e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.59e1

DP
type: SiteQuality
SIO_000300: 3.76857e5

QD
type: SiteQuality
SIO_000300: 1.826e1

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.057e0

MQ
type: SiteQuality
SIO_000300: 5.59e1

DP
type: SiteQuality
SIO_000300: 3.7599e5

FS
type: SiteQuality
SIO_000300: 4.81e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.641e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 8.911e0

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

DP
type: SiteQuality
SIO_000300: 3.75057e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 3.75057e5

MQ
type: SiteQuality
SIO_000300: 5.641e1

QD
type: SiteQuality
SIO_000300: 1.152e1

FS
type: SiteQuality
SIO_000300: 8.911e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.226e0

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

GenotypeQuality
all individuals: 3309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.149377593360996e-3
allele num: 482
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

DP
type: SiteQuality
SIO_000300: 3.75218e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

FS
type: SiteQuality
SIO_000300: 1.399e0

QD
type: SiteQuality
SIO_000300: 1.993e1

VQSLOD
type: SiteQuality
SIO_000300: -9.661999999999999e-1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.112e0

DP
type: SiteQuality
SIO_000300: 3.74676e5

MQ
type: SiteQuality
SIO_000300: 5.532e1

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 9.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

FS
type: SiteQuality
SIO_000300: 7.108e0

MQRankSum
type: SiteQuality
SIO_000300: -1.728e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.112e0

FS
type: SiteQuality
SIO_000300: 7.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 3.74676e5

MQRankSum
type: SiteQuality
SIO_000300: -1.728e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

MQ
type: SiteQuality
SIO_000300: 5.532e1

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 9.31e0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.741573033707865e-3
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.181e1

DP
type: SiteQuality
SIO_000300: 3.73082e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

FS
type: SiteQuality
SIO_000300: 1.757e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.802e1

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.401360544217687e-3
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.513840830449827e-3
allele num: 4624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.54298e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

QD
type: SiteQuality
SIO_000300: 1.299e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

FS
type: SiteQuality
SIO_000300: 6.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.549e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.34145e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 8.702e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 5.594e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.34145e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

QD
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 5.594e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

FS
type: SiteQuality
SIO_000300: 8.702e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

FS
type: SiteQuality
SIO_000300: 8.702e0

DP
type: SiteQuality
SIO_000300: 3.34145e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

QD
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 5.594e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.851851851851852e-2
allele num: 54
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.594e1

DP
type: SiteQuality
SIO_000300: 3.34145e5

FS
type: SiteQuality
SIO_000300: 8.702e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

QD
type: SiteQuality
SIO_000300: 2.89e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

MQ
type: SiteQuality
SIO_000300: 5.594e1

FS
type: SiteQuality
SIO_000300: 8.702e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 3.34145e5

QD
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.5e-2
allele num: 120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.34145e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.258e-1

MQ
type: SiteQuality
SIO_000300: 5.594e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 8.702e0

QD
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0