2-175446194-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446194
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446194
    reference: chr 2
allele count: 5
allele frequency: 4.12609341475491e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-6007G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+33989G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+33989G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-27C>G
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

2-175446196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446196
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446196
    reference: chr 2
allele count: 7
allele frequency: 5.777293585553465e-5
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-6005C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+33991C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+33991C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-29G>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-175446206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446206
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446206
    reference: chr 2
allele count: 2
allele frequency: 1.651664051531918e-5
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+34001G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+34001G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-5995G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-39C>T
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

2-175446209-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446209
    reference: chr 2
allele count: 12
allele frequency: 9.911130199213717e-5
allele num: 121076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+34004A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+34004A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-5992A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-42T>C
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175446218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446218
    reference: chr 2
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+34013C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+34013C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-5983C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-51G>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-175446219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175446219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175446219
    reference: chr 2
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-5982A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.294-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+34014A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.52-52T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+34014A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

2-175450204-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450204
    reference: chr 2
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1997T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+37999T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+47A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+37999T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-175450225-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450225
    reference: chr 2
allele count: 12
allele frequency: 9.979541939024999e-5
allele num: 120246
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1976A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38020A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+26T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38020A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14148
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

2-175450228-GTGTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450224
    reference: chr 2
allele count: 3
allele frequency: 2.494843989089216e-5
allele num: 120248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38026_104+38029delTTTG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38026_217+38029delTTTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+19_293+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+19_51+22delAACA
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1970_204-1967delTTTG
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: GTGTT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-175450237-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450237
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450237
    reference: chr 2
allele count: 13
allele frequency: 1.081566774268694e-4
allele num: 120196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38032G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38032G>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1964G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+14C>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19478
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-175450244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450244
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450244
    reference: chr 2
allele count: 3
allele frequency: 2.497336174746936e-5
allele num: 120128
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38039C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38039C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1957C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+7G>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.51+7G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-175450245-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450245
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450245
    reference: chr 2
allele count: 2
allele frequency: 1.665251203143994e-5
allele num: 120102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1956A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51+6T>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38040A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38040A>G
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.51+6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-175450251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450251
    reference: chr 2
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.51G>A
  hgvsp: ENST00000409891.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.51G>A
  hgvsp: ENST00000272746.5:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38046C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.51G>A
  hgvsp: ENST00000392547.2:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.51G>A
  hgvsp: ENST00000455428.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.51G>A
  hgvsp: ENST00000359761.3:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.51G>A
  hgvsp: ENST00000392546.2:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.51G>A
  hgvsp: ENST00000436221.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.51G>A
  hgvsp: ENST00000410117.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.293G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.51G>A
  hgvsp: ENST00000409415.3:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1950C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38046C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.51G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-175450253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450253
    reference: chr 2
allele count: 5
allele frequency: 4.170489615480858e-5
allele num: 119890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.49C>T
  hgvsp: ENST00000409415.3:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.49C>T
  hgvsp: ENST00000409891.1:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.49C>T
  hgvsp: ENST00000359761.3:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.49C>T
  hgvsp: ENST00000392546.2:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.49C>T
  hgvsp: ENST00000392547.2:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.49C>T
  hgvsp: ENST00000436221.1:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.49C>T
  hgvsp: ENST00000455428.1:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38048G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.49C>T
  hgvsp: ENST00000272746.5:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.49C>T
  hgvsp: ENST00000410117.1:c.49C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38048G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.291C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1948G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.49C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-175450260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450260
    reference: chr 2
allele count: 304
allele frequency: 2.548924253349655e-3
allele num: 119266
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1941C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.42G>A
  hgvsp: ENST00000436221.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.42G>A
  hgvsp: ENST00000359761.3:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.42G>A
  hgvsp: ENST00000392547.2:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.42G>A
  hgvsp: ENST00000272746.5:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.42G>A
  hgvsp: ENST00000455428.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38055C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.42G>A
  hgvsp: ENST00000392546.2:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.284G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.42G>A
  hgvsp: ENST00000410117.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.42G>A
  hgvsp: ENST00000409891.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38055C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.42G>A
  hgvsp: ENST00000409415.3:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19423
  bin: 2.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
hgvs: p.Thr14Thr
num of homozygotes: 7
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-175450263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450263
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450263
    reference: chr 2
allele count: 5
allele frequency: 4.22904508162057e-5
allele num: 118230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.39G>A
  hgvsp: ENST00000392547.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.39G>A
  hgvsp: ENST00000359761.3:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.39G>A
  hgvsp: ENST00000436221.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.39G>A
  hgvsp: ENST00000409415.3:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.39G>A
  hgvsp: ENST00000272746.5:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.39G>A
  hgvsp: ENST00000409891.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.39G>A
  hgvsp: ENST00000410117.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.39G>A
  hgvsp: ENST00000392546.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38058C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.39G>A
  hgvsp: ENST00000455428.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1938C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.281G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38058C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro13Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-175450264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450264
    reference: chr 2
allele count: 2
allele frequency: 1.687621297780778e-5
allele num: 118510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.38C>T
  hgvsp: ENSP00000272746.5:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.38C>T
  hgvsp: ENSP00000376329.2:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.38C>T
  hgvsp: ENSP00000388454.1:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38059G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.38C>T
  hgvsp: ENSP00000386757.1:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.38C>T
  hgvsp: ENSP00000387150.3:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38059G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.280C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.38C>T
  hgvsp: ENSP00000352802.3:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.38C>T
  hgvsp: ENSP00000376330.2:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.38C>T
  hgvsp: ENSP00000391785.1:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.38C>T
  hgvsp: ENSP00000386431.1:p.Pro13Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1937G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro13Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-175450264-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450264
    reference: chr 2
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.38C>A
  hgvsp: ENSP00000388454.1:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.38C>A
  hgvsp: ENSP00000387150.3:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.38C>A
  hgvsp: ENSP00000376330.2:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.38C>A
  hgvsp: ENSP00000386757.1:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.38C>A
  hgvsp: ENSP00000376329.2:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38059G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.280C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.38C>A
  hgvsp: ENSP00000272746.5:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.38C>A
  hgvsp: ENSP00000391785.1:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38059G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.38C>A
  hgvsp: ENSP00000352802.3:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.38C>A
  hgvsp: ENSP00000386431.1:p.Pro13Gln
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1937G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro13Gln
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

2-175450265-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450265
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450265
    reference: chr 2
allele count: 1
allele frequency: 8.428434165500733e-6
allele num: 118646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.37C>T
  hgvsp: ENSP00000376330.2:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.37C>T
  hgvsp: ENSP00000376329.2:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1936G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.279C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.37C>T
  hgvsp: ENSP00000388454.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.37C>T
  hgvsp: ENSP00000386757.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.37C>T
  hgvsp: ENSP00000386431.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.37C>T
  hgvsp: ENSP00000272746.5:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.37C>T
  hgvsp: ENSP00000387150.3:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.37C>T
  hgvsp: ENSP00000391785.1:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.37C>T
  hgvsp: ENSP00000352802.3:p.Pro13Ser
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38060G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38060G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro13Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-175450266-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450266
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450266
    reference: chr 2
allele count: 6
allele frequency: 5.053397567631304e-5
allele num: 118732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.36C>T
  hgvsp: ENST00000410117.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.36C>T
  hgvsp: ENST00000392546.2:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.278C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.36C>T
  hgvsp: ENST00000455428.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.36C>T
  hgvsp: ENST00000272746.5:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38061G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1935G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38061G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.36C>T
  hgvsp: ENST00000392547.2:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.36C>T
  hgvsp: ENST00000409415.3:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.36C>T
  hgvsp: ENST00000436221.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.36C>T
  hgvsp: ENST00000359761.3:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.36C>T
  hgvsp: ENST00000409891.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro12Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

2-175450269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450269
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450269
    reference: chr 2
allele count: 3
allele frequency: 2.532970837062429e-5
allele num: 118438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1932C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.33G>A
  hgvsp: ENST00000392547.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.33G>A
  hgvsp: ENST00000392546.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.33G>A
  hgvsp: ENST00000455428.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38064C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.33G>A
  hgvsp: ENST00000409415.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.33G>A
  hgvsp: ENST00000410117.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38064C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.33G>A
  hgvsp: ENST00000359761.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.33G>A
  hgvsp: ENST00000272746.5:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.33G>A
  hgvsp: ENST00000409891.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.33G>A
  hgvsp: ENST00000436221.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.275G>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10437
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro11Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

2-175450270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450270
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450270
    reference: chr 2
allele count: 28
allele frequency: 2.359722901110755e-4
allele num: 118658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.32C>T
  hgvsp: ENSP00000391785.1:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.32C>T
  hgvsp: ENSP00000388454.1:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.274C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.32C>T
  hgvsp: ENSP00000376329.2:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.32C>T
  hgvsp: ENSP00000272746.5:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.32C>T
  hgvsp: ENSP00000352802.3:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.32C>T
  hgvsp: ENSP00000376330.2:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.32C>T
  hgvsp: ENSP00000387150.3:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1931G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38065G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38065G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.32C>T
  hgvsp: ENSP00000386757.1:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.32C>T
  hgvsp: ENSP00000386431.1:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro11Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-175450272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450272
    reference: chr 2
allele count: 10
allele frequency: 8.598748022287954e-5
allele num: 116296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.30G>C
  hgvsp: ENST00000359761.3:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.30G>C
  hgvsp: ENST00000392546.2:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.30G>C
  hgvsp: ENST00000455428.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.30G>C
  hgvsp: ENST00000392547.2:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38067C>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1929C>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.30G>C
  hgvsp: ENST00000409415.3:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.30G>C
  hgvsp: ENST00000272746.5:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38067C>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.30G>C
  hgvsp: ENST00000410117.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.30G>C
  hgvsp: ENST00000409891.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.272G>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.30G>C
  hgvsp: ENST00000436221.1:c.30G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19529
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro10Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

2-175450272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450272
    reference: chr 2
allele count: 3
allele frequency: 2.579624406686387e-5
allele num: 116296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38067C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.30G>A
  hgvsp: ENST00000392546.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.30G>A
  hgvsp: ENST00000410117.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.30G>A
  hgvsp: ENST00000392547.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1929C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.30G>A
  hgvsp: ENST00000436221.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.30G>A
  hgvsp: ENST00000409415.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.30G>A
  hgvsp: ENST00000455428.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38067C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.30G>A
  hgvsp: ENST00000272746.5:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.30G>A
  hgvsp: ENST00000359761.3:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.272G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.30G>A
  hgvsp: ENST00000409891.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro10Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

2-175450275-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450275
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450275
    reference: chr 2
allele count: 1
allele frequency: 8.430850166930833e-6
allele num: 118612
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38070G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.27C>G
  hgvsp: ENST00000409415.3:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.27C>G
  hgvsp: ENST00000392547.2:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.27C>G
  hgvsp: ENST00000359761.3:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.269C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.27C>G
  hgvsp: ENST00000392546.2:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.27C>G
  hgvsp: ENST00000272746.5:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.27C>G
  hgvsp: ENST00000436221.1:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.27C>G
  hgvsp: ENST00000455428.1:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.27C>G
  hgvsp: ENST00000409891.1:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38070G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1926G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.27C>G
  hgvsp: ENST00000410117.1:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro9Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

2-175450276-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450276
    reference: chr 2
allele count: 6
allele frequency: 5.05774256090365e-5
allele num: 118630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.26C>T
  hgvsp: ENSP00000376330.2:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.268C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.26C>T
  hgvsp: ENSP00000376329.2:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.26C>T
  hgvsp: ENSP00000388454.1:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38071G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.26C>T
  hgvsp: ENSP00000386757.1:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38071G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.26C>T
  hgvsp: ENSP00000387150.3:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.26C>T
  hgvsp: ENSP00000391785.1:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1925G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.26C>T
  hgvsp: ENSP00000352802.3:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.26C>T
  hgvsp: ENSP00000386431.1:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.26C>T
  hgvsp: ENSP00000272746.5:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro9Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

2-175450278-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450278
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450278
    reference: chr 2
allele count: 1
allele frequency: 8.490405841399219e-6
allele num: 117780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.24A>C
  hgvsp: ENST00000392546.2:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.24A>C
  hgvsp: ENST00000359761.3:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38073T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.24A>C
  hgvsp: ENST00000409891.1:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.24A>C
  hgvsp: ENST00000436221.1:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.24A>C
  hgvsp: ENST00000392547.2:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.24A>C
  hgvsp: ENST00000410117.1:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1923T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38073T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.24A>C
  hgvsp: ENST00000272746.5:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.266A>C
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.24A>C
  hgvsp: ENST00000409415.3:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.24A>C
  hgvsp: ENST00000455428.1:c.24A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala8Ala
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-175450283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450283
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450283
    reference: chr 2
allele count: 2
allele frequency: 1.690559913443332e-5
allele num: 118304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.19C>G
  hgvsp: ENSP00000391785.1:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.19C>G
  hgvsp: ENSP00000388454.1:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38078G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.261C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.19C>G
  hgvsp: ENSP00000352802.3:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.19C>G
  hgvsp: ENSP00000272746.5:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.19C>G
  hgvsp: ENSP00000376330.2:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.19C>G
  hgvsp: ENSP00000387150.3:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1918G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.19C>G
  hgvsp: ENSP00000386757.1:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.19C>G
  hgvsp: ENSP00000386431.1:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.19C>G
  hgvsp: ENSP00000376329.2:p.Pro7Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38078G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro7Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

2-175450286-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450286
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450286
    reference: chr 2
allele count: 4
allele frequency: 3.381805884342239e-5
allele num: 118280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.16C>G
  hgvsp: ENSP00000388454.1:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.16C>G
  hgvsp: ENSP00000272746.5:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.16C>G
  hgvsp: ENSP00000387150.3:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.16C>G
  hgvsp: ENSP00000386431.1:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.16C>G
  hgvsp: ENSP00000352802.3:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1915G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.16C>G
  hgvsp: ENSP00000386757.1:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38081G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.16C>G
  hgvsp: ENSP00000376329.2:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.16C>G
  hgvsp: ENSP00000391785.1:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.258C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.16C>G
  hgvsp: ENSP00000376330.2:p.Pro6Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38081G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro6Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-175450289-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450289
    reference: chr 2
allele count: 1
allele frequency: 8.460236886632826e-6
allele num: 118200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.13C>A
  hgvsp: ENSP00000387150.3:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38084G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38084G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.13C>A
  hgvsp: ENSP00000388454.1:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.13C>A
  hgvsp: ENSP00000376329.2:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.13C>A
  hgvsp: ENSP00000391785.1:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.13C>A
  hgvsp: ENSP00000352802.3:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.13C>A
  hgvsp: ENSP00000376330.2:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.13C>A
  hgvsp: ENSP00000386757.1:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.13C>A
  hgvsp: ENSP00000272746.5:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.13C>A
  hgvsp: ENSP00000386431.1:p.Pro5Thr
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1912G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.255C>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro5Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-175450292-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450292
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450292
    reference: chr 2
allele count: 1
allele frequency: 8.470843357164639e-6
allele num: 118052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38087G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.10C>G
  hgvsp: ENSP00000386431.1:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1909G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.10C>G
  hgvsp: ENSP00000387150.3:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.10C>G
  hgvsp: ENSP00000352802.3:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.10C>G
  hgvsp: ENSP00000386757.1:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.10C>G
  hgvsp: ENSP00000376329.2:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.252C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.10C>G
  hgvsp: ENSP00000388454.1:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.10C>G
  hgvsp: ENSP00000272746.5:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.10C>G
  hgvsp: ENSP00000391785.1:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.10C>G
  hgvsp: ENSP00000376330.2:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38087G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro4Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-175450305-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450305
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450305
    reference: chr 2
allele count: 1
allele frequency: 8.522388314101144e-6
allele num: 117338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38100G>T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-4C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1896G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.239C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38100G>T
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

2-175450315-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450315
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450315
    reference: chr 2
allele count: 1
allele frequency: 8.578683686775101e-6
allele num: 116568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.229C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38110G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38110G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1886G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-14C>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-175450317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450317
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450317
    reference: chr 2
allele count: 1
allele frequency: 8.588999209812073e-6
allele num: 116428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.227C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38112G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38112G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000391785
  ensembl transcript: ENST00000455428
  gene symbol: WIPF1
  hgvsc: ENST00000455428.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1884G>A
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

2-175450323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450323
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450323
    reference: chr 2
allele count: 9
allele frequency: 7.766119011459339e-5
allele num: 115888
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1878C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38118C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-22G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.221G>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38118C>T
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18341
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-175450325-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450325
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450325
    reference: chr 2
allele count: 5
allele frequency: 4.316969142304571e-5
allele num: 115822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38120G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1876G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38120G>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-24C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.219C>G
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

2-175450326-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450326
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450326
    reference: chr 2
allele count: 12
allele frequency: 1.037685270057592e-4
allele num: 115642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38121T>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1875T>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.218A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-25A>T
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38121T>A
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-175450326-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450326
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450326
    reference: chr 2
allele count: 10
allele frequency: 8.647377250479929e-5
allele num: 115642
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38121T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1875T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.218A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38121T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-175450330-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450330
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450330
    reference: chr 2
allele count: 7
allele frequency: 6.077971694017539e-5
allele num: 115170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1871G>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38125G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.214C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38125G>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-29C>G
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16506
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

2-175450330-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450330
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450330
    reference: chr 2
allele count: 1
allele frequency: 8.682816705739342e-6
allele num: 115170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38125G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38125G>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1871G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.214C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-29C>A
  variant of: http://identifiers.org/hgnc/12736
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

2-175450335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175450335
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175450335
    reference: chr 2
allele count: 1
allele frequency: 8.723719794120213e-6
allele num: 114630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000388454
  ensembl transcript: ENST00000436221
  gene symbol: WIPF1
  hgvsc: ENST00000436221.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386757
  ensembl transcript: ENST00000410117
  gene symbol: WIPF1
  hgvsc: ENST00000410117.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000387150
  ensembl transcript: ENST00000409415
  gene symbol: WIPF1
  hgvsc: ENST00000409415.3:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000412835
  gene symbol: AC018890.6
  hgvsc: ENST00000412835.1:n.104+38130T>C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000352802
  ensembl transcript: ENST00000359761
  gene symbol: WIPF1
  hgvsc: ENST00000359761.3:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000386431
  ensembl transcript: ENST00000409891
  gene symbol: WIPF1
  hgvsc: ENST00000409891.1:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115935
  ensembl transcript: ENST00000480400
  gene symbol: WIPF1
  hgvsc: ENST00000480400.1:n.209A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000272746
  ensembl transcript: ENST00000272746
  gene symbol: WIPF1
  hgvsc: ENST00000272746.5:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376330
  ensembl transcript: ENST00000392547
  gene symbol: WIPF1
  hgvsc: ENST00000392547.2:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115935
  ensembl protein: ENSP00000376329
  ensembl transcript: ENST00000392546
  gene symbol: WIPF1
  hgvsc: ENST00000392546.2:c.-34A>G
  variant of: http://identifiers.org/hgnc/12736
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237798
  ensembl transcript: ENST00000454203
  gene symbol: AC010894.5
  hgvsc: ENST00000454203.1:n.204-1866T>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.217+38130T>C
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-175612805-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612805
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612804
    reference: chr 2
allele count: 2
allele frequency: 1.650791554550407e-5
allele num: 121154
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18254delG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*46delC
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*46delC
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*46delC
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1064delC
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*46delC
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: TG
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

2-175612812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612812
    reference: chr 2
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*40C>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18260G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*40C>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*40C>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1058C>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*40C>G
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10547
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

2-175612813-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612813
    reference: chr 2
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18261T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1057A>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*39A>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*39A>G
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20142
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-175612815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612815
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612815
    reference: chr 2
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*37C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1055C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18263G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*37C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-175612816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612816
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612816
    reference: chr 2
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1054C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*36C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*36C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*36C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*36C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18264G>T
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175612834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612834
    reference: chr 2
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*18C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*18C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18282G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1036C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175612840-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612840
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612840
    reference: chr 2
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18288C>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*12G>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1030G>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*12G>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*12G>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*12G>C
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10533
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-175612850-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612850
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612850
    reference: chr 2
allele count: 9
allele frequency: 7.420110147412856e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.*2C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18298G>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.*2C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.*2C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.*2C>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1020C>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-175612856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612856
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612856
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18304C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1370G>A
  hgvsp: ENSP00000261008.5:p.Gly457Glu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1124G>A
  hgvsp: ENSP00000387026.1:p.Gly375Glu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1445G>A
  hgvsp: ENSP00000261007.5:p.Gly482Glu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1130G>A
  hgvsp: ENSP00000386611.1:p.Gly377Glu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*1014G>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26703
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly482Glu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

2-175612874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612874
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612874
    reference: chr 2
allele count: 6
allele frequency: 4.945516888940176e-5
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*996T>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1106T>C
  hgvsp: ENSP00000387026.1:p.Ile369Thr
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1112T>C
  hgvsp: ENSP00000386611.1:p.Ile371Thr
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18322A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1427T>C
  hgvsp: ENSP00000261007.5:p.Ile476Thr
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1352T>C
  hgvsp: ENSP00000261008.5:p.Ile451Thr
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4358
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile476Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-175612880-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612880
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612880
    reference: chr 2
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18328C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1106G>T
  hgvsp: ENSP00000386611.1:p.Arg369Leu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1100G>T
  hgvsp: ENSP00000387026.1:p.Arg367Leu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1421G>T
  hgvsp: ENSP00000261007.5:p.Arg474Leu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1346G>T
  hgvsp: ENSP00000261008.5:p.Arg449Leu
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*990G>T
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg474Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-175612880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612880
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612880
    reference: chr 2
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1100G>A
  hgvsp: ENSP00000387026.1:p.Arg367Gln
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18328C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1346G>A
  hgvsp: ENSP00000261008.5:p.Arg449Gln
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1421G>A
  hgvsp: ENSP00000261007.5:p.Arg474Gln
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1106G>A
  hgvsp: ENSP00000386611.1:p.Arg369Gln
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*990G>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10524
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg474Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-175612893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612893
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612893
    reference: chr 2
allele count: 4
allele frequency: 3.297011259293451e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1333G>A
  hgvsp: ENSP00000261008.5:p.Val445Met
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18341C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1087G>A
  hgvsp: ENSP00000387026.1:p.Val363Met
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1093G>A
  hgvsp: ENSP00000386611.1:p.Val365Met
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*977G>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1408G>A
  hgvsp: ENSP00000261007.5:p.Val470Met
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val470Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-175612894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612894
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612894
    reference: chr 2
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1086C>T
  hgvsp: ENST00000409542.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18342G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1332C>T
  hgvsp: ENST00000348749.5:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1407C>T
  hgvsp: ENST00000261007.5:c.1407C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1092C>T
  hgvsp: ENST00000409219.1:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*976C>T
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10517
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala469Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-175612897-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612897
    reference: chr 2
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1089A>T
  hgvsp: ENST00000409219.1:c.1089A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1083A>T
  hgvsp: ENST00000409542.1:c.1083A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18345T>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1329A>T
  hgvsp: ENST00000348749.5:c.1329A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*973A>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1404A>T
  hgvsp: ENST00000261007.5:c.1404A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu468Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

2-175612903-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612903
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612903
    reference: chr 2
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1083A>C
  hgvsp: ENST00000409219.1:c.1083A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18351T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1077A>C
  hgvsp: ENST00000409542.1:c.1077A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1398A>C
  hgvsp: ENST00000261007.5:c.1398A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1323A>C
  hgvsp: ENST00000348749.5:c.1323A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*967A>C
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10517
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly466Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

2-175612905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612905
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612905
    reference: chr 2
allele count: 5
allele frequency: 4.121535849118816e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18353C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1396G>A
  hgvsp: ENSP00000261007.5:p.Gly466Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1321G>A
  hgvsp: ENSP00000261008.5:p.Gly441Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*965G>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1081G>A
  hgvsp: ENSP00000386611.1:p.Gly361Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1075G>A
  hgvsp: ENSP00000387026.1:p.Gly359Arg
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10519
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26944
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly466Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

2-175612906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612906
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612906
    reference: chr 2
allele count: 9
allele frequency: 7.417786202917663e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1080C>T
  hgvsp: ENST00000409219.1:c.1080C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1074C>T
  hgvsp: ENST00000409542.1:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18354G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*964C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1320C>T
  hgvsp: ENST00000348749.5:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1395C>T
  hgvsp: ENST00000261007.5:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile465Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-175612909-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612909
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612909
    reference: chr 2
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18357G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1071C>T
  hgvsp: ENST00000409542.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1392C>T
  hgvsp: ENST00000261007.5:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*961C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1317C>T
  hgvsp: ENST00000348749.5:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1077C>T
  hgvsp: ENST00000409219.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10510
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile464Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-175612932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612932
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612932
    reference: chr 2
allele count: 13
allele frequency: 1.071616987602216e-4
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1369G>A
  hgvsp: ENSP00000261007.5:p.Gly457Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1054G>A
  hgvsp: ENSP00000386611.1:p.Gly352Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1048G>A
  hgvsp: ENSP00000387026.1:p.Gly350Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18380C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1294G>A
  hgvsp: ENSP00000261008.5:p.Gly432Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*938G>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21309
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10513
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly457Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

2-175612933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612933
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612933
    reference: chr 2
allele count: 56
allele frequency: 4.616424579163438e-4
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*937C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1053C>T
  hgvsp: ENST00000409219.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1293C>T
  hgvsp: ENST00000348749.5:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1047C>T
  hgvsp: ENST00000409542.1:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18381G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1368C>T
  hgvsp: ENST00000261007.5:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu456Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

2-175612938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612938
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612938
    reference: chr 2
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1048C>T
  hgvsp: ENSP00000386611.1:p.Leu350Phe
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1363C>T
  hgvsp: ENSP00000261007.5:p.Leu455Phe
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1042C>T
  hgvsp: ENSP00000387026.1:p.Leu348Phe
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*932C>T
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18386G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1288C>T
  hgvsp: ENSP00000261008.5:p.Leu430Phe
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10487
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu455Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-175612948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612948
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612948
    reference: chr 2
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18396C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1353G>A
  hgvsp: ENSP00000261007.5:p.Met451Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1038G>A
  hgvsp: ENSP00000386611.1:p.Met346Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1278G>A
  hgvsp: ENSP00000261008.5:p.Met426Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1032G>A
  hgvsp: ENSP00000387026.1:p.Met344Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*922G>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10486
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26965
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met451Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/2-175612955-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612955
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612955
    reference: chr 2
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1271T>G
  hgvsp: ENSP00000261008.5:p.Met424Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1031T>G
  hgvsp: ENSP00000386611.1:p.Met344Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1346T>G
  hgvsp: ENSP00000261007.5:p.Met449Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18403A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1025T>G
  hgvsp: ENSP00000387026.1:p.Met342Arg
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*915T>G
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met449Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

2-175612957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612957
    reference: chr 2
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1029A>G
  hgvsp: ENST00000409219.1:c.1029A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1269A>G
  hgvsp: ENST00000348749.5:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*913A>G
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1344A>G
  hgvsp: ENST00000261007.5:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1023A>G
  hgvsp: ENST00000409542.1:c.1023A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18405T>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala448Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

2-175612960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612960
    reference: chr 2
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1266T>C
  hgvsp: ENST00000348749.5:c.1266T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*910T>C
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1020T>C
  hgvsp: ENST00000409542.1:c.1020T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1341T>C
  hgvsp: ENST00000261007.5:c.1341T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1026T>C
  hgvsp: ENST00000409219.1:c.1026T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18408A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10485
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4315
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val447Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

2-175612962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612962
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612962
    reference: chr 2
allele count: 5
allele frequency: 4.125344466262933e-5
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1264G>A
  hgvsp: ENSP00000261008.5:p.Val422Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1339G>A
  hgvsp: ENSP00000261007.5:p.Val447Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1024G>A
  hgvsp: ENSP00000386611.1:p.Val342Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1018G>A
  hgvsp: ENSP00000387026.1:p.Val340Ile
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*908G>A
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18410C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val447Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-175612966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 175612966
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 175612966
    reference: chr 2
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000386611
  ensembl transcript: ENST00000409219
  gene symbol: CHRNA1
  hgvsc: ENST00000409219.1:c.1020G>A
  hgvsp: ENST00000409219.1:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000387026
  ensembl transcript: ENST00000409542
  gene symbol: CHRNA1
  hgvsc: ENST00000409542.1:c.1014G>A
  hgvsp: ENST00000409542.1:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236449
  ensembl transcript: ENST00000442996
  gene symbol: AC018890.6
  hgvsc: ENST00000442996.1:n.321+18414C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261008
  ensembl transcript: ENST00000348749
  gene symbol: CHRNA1
  hgvsc: ENST00000348749.5:c.1260G>A
  hgvsp: ENST00000348749.5:c.1260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000261007
  ensembl transcript: ENST00000261007
  gene symbol: CHRNA1
  hgvsc: ENST00000261007.5:c.1335G>A
  hgvsp: ENST00000261007.5:c.1335G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1955
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138435
  ensembl protein: ENSP00000395805
  ensembl transcript: ENST00000435083
  gene symbol: CHRNA1
  hgvsc: ENST00000435083.1:c.*904G>A
  variant of: http://identifiers.org/hgnc/1955
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys445Lys
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 567
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8580
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32286
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3499
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.037298019681691e-4
allele num: 16462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 2.891931e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

FS
type: SiteQuality
SIO_000300: 1.864e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.602e1

MQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeDepth
all individuals: 7259
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6879
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32283
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.732063858434314e-4
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.76e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

DP
type: SiteQuality
SIO_000300: 2.890509e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeDepth
all individuals: 3934
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7319
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32271
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 2.876321e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 6.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.078e0

FS
type: SiteQuality
SIO_000300: 4.958e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

GenotypeDepth
all individuals: 2681
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5615
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32276
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 646
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004266057802079e-5
allele num: 66572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.47845142439737e-4
allele num: 16428
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.382e0

VQSLOD
type: SiteQuality
SIO_000300: -2.307e-1

DP
type: SiteQuality
SIO_000300: 2.870178e6

QD
type: SiteQuality
SIO_000300: 1.853e1

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

GenotypeDepth
all individuals: 1796
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1516
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.127450980392157e-5
allele num: 16320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.861235e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.212e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 733
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5614
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

BaseQRankSum
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SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.368e0

QD
type: SiteQuality
SIO_000300: 1.361e1

DP
type: SiteQuality
SIO_000300: 2.861241e6

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8009
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511395925276585e-5
allele num: 66164
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.842061e6

MQRankSum
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SIO_000300: 2.71e-1

VQSLOD
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SIO_000300: 4.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.35e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7201
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variant carriers: 11

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.359197907585005e-4
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.057561565191116e-4
allele num: 66190
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.582e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e-1

DP
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SIO_000300: 1.867729e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 2.743e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2175
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GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.925117004680187e-4
allele num: 10256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.461e1

DP
type: SiteQuality
SIO_000300: 1.86833e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.779e0

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.171188756587937e-3
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.095e1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

BaseQRankSum
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SIO_000300: -2.433e0

MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 1.87289e6

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.833740831295844e-4
allele num: 16360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
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SIO_000300: 7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

ClippingRankSum
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SIO_000300: -9.21e-1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 386
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026359592046727e-5
allele num: 66086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

FS
type: SiteQuality
SIO_000300: 6.133e0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ClippingRankSum
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SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.871875e6

VQSLOD
type: SiteQuality
SIO_000300: -1.254e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

GenotypeDepth
all individuals: 274
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variant carriers: 0

GenotypeDepth
all individuals: 346
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQ
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 5.820721769499418e-4
allele num: 8590
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65984
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 1.136363636363636e-3
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.093102607847916e-5
allele num: 65648
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 7.889200561009817e-4
allele num: 11408
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.837334639882411e-4
allele num: 16328
num of homozygotes: 0

African
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allele count: 287
allele frequency: 2.866560127846584e-2
allele num: 10012
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VQSLOD
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QD
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.974e1

ClippingRankSum
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MQRankSum
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SIO_000300: 3.43e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 8.788890841975742e-5
allele num: 11378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.613397305775973e-5
allele num: 65028
num of homozygotes: 0

East Asian
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allele num: 8540
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African
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BaseQRankSum
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SIO_000300: 2.99e-1

MQ
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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Latino
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South Asian
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East Asian
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532801961986511e-5
allele num: 65240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.461e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQRankSum
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SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 1.840234e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.661426251110906e-5
allele num: 65262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
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SIO_000300: -1.275e0

BaseQRankSum
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SIO_000300: -1.853e0

InbreedingCoeff
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SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 1.840556e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.227144434899988e-4
allele num: 16298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

FS
type: SiteQuality
SIO_000300: 1.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.838982e6

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 982
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.629733520336606e-4
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.925415484394001e-3
allele num: 9868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.668476427103463e-5
allele num: 65202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 5.43e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

DP
type: SiteQuality
SIO_000300: 1.840265e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.583481124904991e-4
allele num: 63152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.855236e6

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 4.7932e1

InbreedingCoeff
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SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
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SIO_000300: -1.247e1

BaseQRankSum
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SIO_000300: -2.191e0

QD
type: SiteQuality
SIO_000300: 2.93e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.166962249809982e-5
allele num: 63152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 4.7932e1

BaseQRankSum
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SIO_000300: -2.191e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534966537729477e-5
allele num: 65148
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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BaseQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.27e-1

ReadPosRankSum
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.58e1

DP
type: SiteQuality
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GenotypeDepth
all individuals: 342
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variant carriers: 1

GenotypeDepth
all individuals: 107
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variant carriers: 0

GenotypeDepth
all individuals: 272
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GenotypeDepth
all individuals: 967
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.206690194874942e-5
allele num: 65170
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64786
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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DP
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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SIO_000300: -2.3e-3

ClippingRankSum
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SIO_000300: -3.7e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.351281448389372e-4
allele num: 8506
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ClippingRankSum
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SIO_000300: 6.38e-1

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
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QD
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MQ
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SIO_000300: 5.967e1

MQRankSum
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SIO_000300: 1.58e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.645502645502646e-4
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.539219307966999e-5
allele num: 64968
num of homozygotes: 0

African
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allele count: 0
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South Asian
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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ClippingRankSum
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SIO_000300: 1.44e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.540120129370091e-5
allele num: 64930
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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QD
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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Other
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South Asian
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Latino
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Other
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

QD
type: SiteQuality
SIO_000300: 8.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 1.784599e6

GenotypeDepth
all individuals: 339
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 6531
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64106
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.245316012990258e-5
allele num: 16012
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.117e0

QD
type: SiteQuality
SIO_000300: 9.59e0

ReadPosRankSum
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SIO_000300: -4.33e-1

BaseQRankSum
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SIO_000300: -2.376e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.754624e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: -3.955e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 6.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.058e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.143e0

MQRankSum
type: SiteQuality
SIO_000300: -1.424e0

DP
type: SiteQuality
SIO_000300: 1.749636e6

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 807
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variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.074498567335244e-3
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.161e0

VQSLOD
type: SiteQuality
SIO_000300: -1.639e-1

FS
type: SiteQuality
SIO_000300: 2.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 9.26e0

DP
type: SiteQuality
SIO_000300: 1.7218e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 1891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
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variant carriers: 0

GenotypeQuality
all individuals: 6719
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6887
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variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.847815168257158e-5
allele num: 63712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.711732e6

FS
type: SiteQuality
SIO_000300: 3.162e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 312
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variant carriers: 0

GenotypeQuality
all individuals: 26349
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.004141905276428e-5
allele num: 11106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 1.036484245439469e-3
allele num: 9648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57153633392004e-5
allele num: 63632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.984e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 1.704972e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 746
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GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.259452411994785e-4
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.257229067136032e-4
allele num: 63632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
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SIO_000300: 3.45e-1

QD
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SIO_000300: 1.169e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 1.984e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
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SIO_000300: 2.69e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1785
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GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.891912368205064e-5
allele num: 63356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.39406272444338e-4
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.304e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

VQSLOD
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MQ
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SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 1.666382e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
all individuals: 205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578382473641013e-5
allele num: 63356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.132e1

DP
type: SiteQuality
SIO_000300: 1.666382e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 1.304e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 270
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6709
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15812
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199904007679386e-4
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.004e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.041e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
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SIO_000300: 1.622578e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

GenotypeQuality
all individuals: 1986
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
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GenotypeQuality
all individuals: 1447
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10562
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 2.008157e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 7.132e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 341
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variant carriers: 0

GenotypeQuality
all individuals: 8694
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.013674e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 1.046e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4383
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.014203e6

QD
type: SiteQuality
SIO_000300: 1.846e1

VQSLOD
type: SiteQuality
SIO_000300: -4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 1430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.429e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.993e0

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.484999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
type: SiteQuality
SIO_000300: 2.015712e6

VQSLOD
type: SiteQuality
SIO_000300: -6.101e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
all individuals: 397
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 8697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4373
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 2.016415e6

QD
type: SiteQuality
SIO_000300: 1.046e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 2.033e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.389e1

MQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

DP
type: SiteQuality
SIO_000300: 2.026652e6

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

FS
type: SiteQuality
SIO_000300: 4.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 2.028653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.253e0

GenotypeQuality
all individuals: 26550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.040703052728955e-3
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

DP
type: SiteQuality
SIO_000300: 2.030765e6

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10529
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.691e0

QD
type: SiteQuality
SIO_000300: 8.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.41e-1

DP
type: SiteQuality
SIO_000300: 2.031535e6

VQSLOD
type: SiteQuality
SIO_000300: -6.163e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10529
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49802087081684e-5
allele num: 66696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.032845e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-2

FS
type: SiteQuality
SIO_000300: 1.106e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
all individuals: 26796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10524
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1972
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.03319e6

FS
type: SiteQuality
SIO_000300: 4.174e0

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.174e0

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

DP
type: SiteQuality
SIO_000300: 2.03319e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10522
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26867
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 5.272e0

DP
type: SiteQuality
SIO_000300: 2.033816e6

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.38e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 2.033802e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.18e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10516
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

DP
type: SiteQuality
SIO_000300: 2.033768e6

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

GenotypeQuality
all individuals: 1418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

QD
type: SiteQuality
SIO_000300: 1.406e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

DP
type: SiteQuality
SIO_000300: 2.033827e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.324511330219685e-4
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.034268e6

FS
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10518
bin: 9.75e1
variant carriers: 9

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497885993583016e-5
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.034353e6

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.789e0

MQRankSum
type: SiteQuality
SIO_000300: -1.563e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 7.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e0

DP
type: SiteQuality
SIO_000300: 2.033859e6

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8759
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.459609064175748e-4
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199616122840691e-4
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 2.034248e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10533
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 26962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 7.648240904591944e-4
allele num: 66682
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.094e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.224e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 2.03582e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.863e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.714e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 2.032992e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5004500450045e-5
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 1.911e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 2.032674e6

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.593e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.031913e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 7.27e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.915e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4315
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

FS
type: SiteQuality
SIO_000300: 1.061e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.541e1

DP
type: SiteQuality
SIO_000300: 2.031775e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

QD
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 1.0408e1

DP
type: SiteQuality
SIO_000300: 2.031474e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.929e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

GenotypeQuality
all individuals: 1969
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10488
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002191599867904e-5
allele num: 66618
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.031293e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 2.784e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.386e1