1-40310221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310221
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310221
    reference: chr 1
allele count: 2966
allele frequency: 2.462759685803012e-2
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.186C>T
  hgvsp: ENST00000537223.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.186C>T
  hgvsp: ENST00000537440.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*520C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.360C>T
  hgvsp: ENST00000545233.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.282C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.1020C>T
  hgvsp: ENST00000372818.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1098C>T
  hgvsp: ENST00000316891.5:c.1098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.333C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.852C>T
  hgvsp: ENST00000441669.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*520C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-331C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36720
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 3.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
hgvs: p.Ile366Ile
num of homozygotes: 81
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-40310226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310226
    reference: chr 1
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.1015G>A
  hgvsp: ENSP00000361905.1:p.Glu339Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.328G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-54G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*515G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.181G>A
  hgvsp: ENSP00000437700.1:p.Glu61Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1093G>A
  hgvsp: ENSP00000321810.5:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-336G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.355G>A
  hgvsp: ENSP00000439596.1:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*515G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.181G>A
  hgvsp: ENSP00000440865.1:p.Glu61Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.847G>A
  hgvsp: ENSP00000388333.2:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.277G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu365Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

1-40310260-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310260
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310260
    reference: chr 1
allele count: 23
allele frequency: 1.909759702409619e-4
allele num: 120434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.981G>C
  hgvsp: ENST00000372818.1:c.981G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.813G>C
  hgvsp: ENST00000441669.2:c.813G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*481G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.147G>C
  hgvsp: ENST00000537440.1:c.147G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-370G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.147G>C
  hgvsp: ENST00000537223.1:c.147G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.321G>C
  hgvsp: ENST00000545233.1:c.321G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1059G>C
  hgvsp: ENST00000316891.5:c.1059G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*481G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-88G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.294G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.243G>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser353Ser
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-40310260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310260
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310260
    reference: chr 1
allele count: 2
allele frequency: 1.660660610790973e-5
allele num: 120434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.243G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-370G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.981G>A
  hgvsp: ENST00000372818.1:c.981G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1059G>A
  hgvsp: ENST00000316891.5:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.813G>A
  hgvsp: ENST00000441669.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.147G>A
  hgvsp: ENST00000537223.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.147G>A
  hgvsp: ENST00000537440.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.294G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.321G>A
  hgvsp: ENST00000545233.1:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*481G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*481G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser353Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

1-40310280-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310280
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310280
    reference: chr 1
allele count: 2
allele frequency: 1.662427476601333e-5
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.127T>C
  hgvsp: ENST00000537440.1:c.127T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.793T>C
  hgvsp: ENST00000441669.2:c.793T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1039T>C
  hgvsp: ENST00000316891.5:c.1039T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*461T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.127T>C
  hgvsp: ENST00000537223.1:c.127T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.223T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*461T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.301T>C
  hgvsp: ENST00000545233.1:c.301T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-390T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.961T>C
  hgvsp: ENST00000372818.1:c.961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-108T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.274T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu347Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

1-40310290-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310290
    reference: chr 1
allele count: 1
allele frequency: 8.31849867735871e-6
allele num: 120214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.117T>C
  hgvsp: ENST00000537223.1:c.117T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.783T>C
  hgvsp: ENST00000441669.2:c.783T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.264T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-118T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.213T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-400T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1029T>C
  hgvsp: ENST00000316891.5:c.1029T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.951T>C
  hgvsp: ENST00000372818.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.117T>C
  hgvsp: ENST00000537440.1:c.117T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.291T>C
  hgvsp: ENST00000545233.1:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*451T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*451T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13694
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro343Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

1-40310291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310291
    reference: chr 1
allele count: 1
allele frequency: 8.319190709127816e-6
allele num: 120204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*450C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.782C>T
  hgvsp: ENSP00000388333.2:p.Pro261Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.116C>T
  hgvsp: ENSP00000437700.1:p.Pro39Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-119C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1028C>T
  hgvsp: ENSP00000321810.5:p.Pro343Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-401C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.290C>T
  hgvsp: ENSP00000439596.1:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.950C>T
  hgvsp: ENSP00000361905.1:p.Pro317Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.263C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.212C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*450C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.116C>T
  hgvsp: ENSP00000440865.1:p.Pro39Leu
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro343Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

1-40310296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310296
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310296
    reference: chr 1
allele count: 10
allele frequency: 8.3268106649791e-5
allele num: 120094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.945C>T
  hgvsp: ENST00000372818.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.111C>T
  hgvsp: ENST00000537223.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*445C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-124C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.777C>T
  hgvsp: ENST00000441669.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1023C>T
  hgvsp: ENST00000316891.5:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-406C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.285C>T
  hgvsp: ENST00000545233.1:c.285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.258C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*445C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.111C>T
  hgvsp: ENST00000537440.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.207C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13733
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val341Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

1-40310303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310303
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-131C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*438C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.200C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.278C>T
  hgvsp: ENSP00000439596.1:p.Pro93Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.770C>T
  hgvsp: ENSP00000388333.2:p.Pro257Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.104C>T
  hgvsp: ENSP00000437700.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1016C>T
  hgvsp: ENSP00000321810.5:p.Pro339Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.938C>T
  hgvsp: ENSP00000361905.1:p.Pro313Leu
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*438C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.251C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-413C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.104C>T
  hgvsp: ENSP00000440865.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro339Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-40310304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310304
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310304
    reference: chr 1
allele count: 1
allele frequency: 8.34278849362611e-6
allele num: 119864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*437C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.937C>T
  hgvsp: ENSP00000361905.1:p.Pro313Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1015C>T
  hgvsp: ENSP00000321810.5:p.Pro339Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.103C>T
  hgvsp: ENSP00000440865.1:p.Pro35Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.250C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.769C>T
  hgvsp: ENSP00000388333.2:p.Pro257Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.199C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.277C>T
  hgvsp: ENSP00000439596.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.103C>T
  hgvsp: ENSP00000437700.1:p.Pro35Ser
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*437C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-414C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-132C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro339Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-40310307-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310307
    reference: chr 1
allele count: 1
allele frequency: 8.349615082744685e-6
allele num: 119766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.274G>T
  hgvsp: ENSP00000439596.1:p.Gly92Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1012G>T
  hgvsp: ENSP00000321810.5:p.Gly338Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*434G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.100G>T
  hgvsp: ENSP00000440865.1:p.Gly34Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*434G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-135G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.934G>T
  hgvsp: ENSP00000361905.1:p.Gly312Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-417G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.100G>T
  hgvsp: ENSP00000437700.1:p.Gly34Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.196G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.766G>T
  hgvsp: ENSP00000388333.2:p.Gly256Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.247G>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly338Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-40310313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310313
    reference: chr 1
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-1G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-423G>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1007-1G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-40310317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310317
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310317
    reference: chr 1
allele count: 2
allele frequency: 1.678753693258125e-5
allele num: 119136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-427A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-5A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-5A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34425
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1007-5A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-40310320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310320
    reference: chr 1
allele count: 4
allele frequency: 3.36332296308753e-5
allele num: 118930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-430A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-8A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-8A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1007-8A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-40310332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310332
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310332
    reference: chr 1
allele count: 77
allele frequency: 6.538944936988349e-4
allele num: 117756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-442C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-20C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-20C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27558
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12647
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-40310340-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310339
    reference: chr 1
allele count: 1
allele frequency: 8.528784648187633e-6
allele num: 117250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-451delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-29delC
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-29delC
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: AG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-40310344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310344
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310344
    reference: chr 1
allele count: 1
allele frequency: 8.573094201159083e-6
allele num: 116644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-454G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-32G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-32G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-40310348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310348
    reference: chr 1
allele count: 1
allele frequency: 8.592098706029935e-6
allele num: 116386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-458G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-36G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-36G>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-40310358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310358
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310358
    reference: chr 1
allele count: 1
allele frequency: 8.709284096847239e-6
allele num: 114820
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-468T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-46T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-46T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-40310364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40310364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40310364
    reference: chr 1
allele count: 1
allele frequency: 8.821609414421567e-6
allele num: 113358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.95-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1007-474A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.191-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.929-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1007-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.761-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*429-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.242-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.269-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*429-52A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.95-52A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15520
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-40312842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312842
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312842
    reference: chr 1
allele count: 1
allele frequency: 8.345155637152633e-6
allele num: 119830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.338T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+378T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2530T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+50T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+50T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-40312845-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312845
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.335A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2533A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+375A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+47A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+47A>T
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

1-40312845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312845
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2533A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.335A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+375A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+47A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+47A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

1-40312848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312848
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312848
    reference: chr 1
allele count: 9
allele frequency: 7.505003335557038e-5
allele num: 119920
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2536A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.332A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+372A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+44A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+44A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-40312850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312850
    reference: chr 1
allele count: 2
allele frequency: 1.667639456349537e-5
allele num: 119930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.330A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2538A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+370A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+42A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+42A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16257
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-40312864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312864
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312864
    reference: chr 1
allele count: 293
allele frequency: 2.435010970015292e-3
allele num: 120328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2552T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.316T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+28T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+356T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17407
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 18924
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 4
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

1-40312865-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312865
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312865
    reference: chr 1
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+355A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.315A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+27A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2553A>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+27A>T
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

1-40312865-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312865
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312865
    reference: chr 1
allele count: 3
allele frequency: 2.492191134445405e-5
allele num: 120376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+355A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.315A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+27A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2553A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+27A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-40312865-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312865
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312864
    reference: chr 1
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.314delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2554delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+354delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+26delT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+26delT
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: TA
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

1-40312867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312867
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312867
    reference: chr 1
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+353C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2555C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.313C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+25C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+25C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

1-40312867-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312867
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312867
    reference: chr 1
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.313C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2555C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+25C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+353C>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+25C>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-40312882-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312882
    reference: chr 1
allele count: 23
allele frequency: 1.901014976691903e-4
allele num: 120988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.760+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.190+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.94+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.1006+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2570A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*428+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*428+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.268+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+338A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.1006+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.94+10A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.298A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.241+10A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-40312902-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312902
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312902
    reference: chr 1
allele count: 6
allele frequency: 4.949351634935823e-5
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2590T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.996T>G
  hgvsp: ENST00000316891.5:c.996T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.84T>G
  hgvsp: ENST00000537223.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*418T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.750T>G
  hgvsp: ENST00000441669.2:c.750T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.180T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*414T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+318T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.258T>G
  hgvsp: ENST00000545233.1:c.258T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.996T>G
  hgvsp: ENST00000462797.1:c.996T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*418T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.231T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.84T>G
  hgvsp: ENST00000537440.1:c.84T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.278T>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg332Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

1-40312903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312903
    reference: chr 1
allele count: 33
allele frequency: 2.722053583212353e-4
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.83G>A
  hgvsp: ENSP00000437700.1:p.Arg28His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.230G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.749G>A
  hgvsp: ENSP00000388333.2:p.Arg250His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.995G>A
  hgvsp: ENSP00000321810.5:p.Arg332His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2591G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.257G>A
  hgvsp: ENSP00000439596.1:p.Arg86His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*417G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.995G>A
  hgvsp: ENSP00000473773.1:p.Arg332His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+317G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.179G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.83G>A
  hgvsp: ENSP00000440865.1:p.Arg28His
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.277G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*417G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*413G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg332His
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-40312914-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312914
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.219G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+306G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.72G>T
  hgvsp: ENSP00000440865.1:p.Trp24Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*406G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.168G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2602G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.984G>T
  hgvsp: ENSP00000321810.5:p.Trp328Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.984G>T
  hgvsp: ENSP00000473773.1:p.Trp328Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.72G>T
  hgvsp: ENSP00000437700.1:p.Trp24Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.246G>T
  hgvsp: ENSP00000439596.1:p.Trp82Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*402G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*406G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.738G>T
  hgvsp: ENSP00000388333.2:p.Trp246Cys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.266G>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp328Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-40312916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312916
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312916
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.264T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.70T>C
  hgvsp: ENSP00000437700.1:p.Trp24Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.70T>C
  hgvsp: ENSP00000440865.1:p.Trp24Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.736T>C
  hgvsp: ENSP00000388333.2:p.Trp246Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.982T>C
  hgvsp: ENSP00000321810.5:p.Trp328Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.982T>C
  hgvsp: ENSP00000473773.1:p.Trp328Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*400T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2604T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*404T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.244T>C
  hgvsp: ENSP00000439596.1:p.Trp82Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.166T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.217T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*404T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+304T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp328Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

1-40312918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312918
    reference: chr 1
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.242G>A
  hgvsp: ENSP00000439596.1:p.Arg81Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*402G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*398G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.262G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.980G>A
  hgvsp: ENSP00000473773.1:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.68G>A
  hgvsp: ENSP00000440865.1:p.Arg23Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*402G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.734G>A
  hgvsp: ENSP00000388333.2:p.Arg245Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.68G>A
  hgvsp: ENSP00000437700.1:p.Arg23Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.164G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.215G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+302G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.980G>A
  hgvsp: ENSP00000321810.5:p.Arg327Gln
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2606G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg327Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-40312919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312919
    reference: chr 1
allele count: 47
allele frequency: 3.875713296170466e-4
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.733C>T
  hgvsp: ENSP00000388333.2:p.Arg245Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*401C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.214C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*397C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.67C>T
  hgvsp: ENSP00000437700.1:p.Arg23Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.261C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.979C>T
  hgvsp: ENSP00000321810.5:p.Arg327Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.979C>T
  hgvsp: ENSP00000473773.1:p.Arg327Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*401C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.67C>T
  hgvsp: ENSP00000440865.1:p.Arg23Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.241C>T
  hgvsp: ENSP00000439596.1:p.Arg81Ter
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+301C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.163C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2607C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg327Ter
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-40312931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312931
    reference: chr 1
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*389C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.229C>T
  hgvsp: ENSP00000439596.1:p.Arg77Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.151C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.249C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.967C>T
  hgvsp: ENSP00000321810.5:p.Arg323Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*385C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*389C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.967C>T
  hgvsp: ENSP00000473773.1:p.Arg323Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.721C>T
  hgvsp: ENSP00000388333.2:p.Arg241Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.55C>T
  hgvsp: ENSP00000440865.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.202C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.55C>T
  hgvsp: ENSP00000437700.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+289C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2619C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg323Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-40312939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312939
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312939
    reference: chr 1
allele count: 2
allele frequency: 1.648804616652927e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.713G>A
  hgvsp: ENSP00000388333.2:p.Arg238Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.47G>A
  hgvsp: ENSP00000440865.1:p.Arg16Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.959G>A
  hgvsp: ENSP00000321810.5:p.Arg320Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*381G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2627G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.221G>A
  hgvsp: ENSP00000439596.1:p.Arg74Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*377G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*381G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+281G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.143G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.959G>A
  hgvsp: ENSP00000473773.1:p.Arg320Lys
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.194G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.241G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.47G>A
  hgvsp: ENSP00000437700.1:p.Arg16Lys
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg320Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-40312940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312940
    reference: chr 1
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.220A>G
  hgvsp: ENSP00000439596.1:p.Arg74Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*380A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.193A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.240A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.958A>G
  hgvsp: ENSP00000473773.1:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.958A>G
  hgvsp: ENSP00000321810.5:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*380A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*376A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+280A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.46A>G
  hgvsp: ENSP00000437700.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.712A>G
  hgvsp: ENSP00000388333.2:p.Arg238Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.46A>G
  hgvsp: ENSP00000440865.1:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2628A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.142A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg320Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

1-40312950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312950
    reference: chr 1
allele count: 3
allele frequency: 2.473451619286327e-5
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*366A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.183A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.702A>G
  hgvsp: ENST00000441669.2:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.210A>G
  hgvsp: ENST00000545233.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+270A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.36A>G
  hgvsp: ENST00000537223.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.948A>G
  hgvsp: ENST00000462797.1:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2638A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.132A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*370A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.948A>G
  hgvsp: ENST00000316891.5:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.36A>G
  hgvsp: ENST00000537440.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.230A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*370A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln316Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-40312959-A-AGCTGGAGTGCAATGGCGTGTTCTAGGCTCACTGCAACCTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313000
    reference: chr 1
allele count: 3
allele frequency: 2.474104374216534e-5
allele num: 121256
alternate allele: AGCTGGAGTGCAATGGCGTGTTCTAGGCTCACTGCAACCTCT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsp: ENSP00000473773.1:p.Leu314GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsp: ENSP00000437700.1:p.Leu10GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsp: ENSP00000440865.1:p.Leu10GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsp: ENSP00000388333.2:p.Leu232GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsp: ENSP00000439596.1:p.Leu68GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsp: ENSP00000321810.5:p.Leu314GlufsTer15
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu314GlufsTer15
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

1-40312961-C-CTGGAGTGCAATGGCGTGTTCTAGGCTCACTGCAACCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312998
    reference: chr 1
allele count: 2
allele frequency: 1.649756660892518e-5
allele num: 121230
alternate allele: CTGGAGTGCAATGGCGTGTTCTAGGCTCACTGCAACCT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsp: ENSP00000321810.5:p.Ala313ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsp: ENSP00000388333.2:p.Ala231ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsp: ENSP00000437700.1:p.Ala9ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsp: ENSP00000473773.1:p.Ala313ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsp: ENSP00000439596.1:p.Ala67ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsp: ENSP00000440865.1:p.Ala9ArgfsTer4
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala313ArgfsTer4
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-40312973-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312973
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312973
    reference: chr 1
allele count: 3
allele frequency: 2.476923330966496e-5
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2661T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-4T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+247T>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.929-4T>G
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-40312980-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312980
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312980
    reference: chr 1
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2668G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-11G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+240G>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-11G>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-40312989-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312989
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312989
    reference: chr 1
allele count: 5
allele frequency: 4.137018037398643e-5
allele num: 120860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+231A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2677A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-20A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-20A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17144
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-40312991-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312991
    reference: chr 1
allele count: 8
allele frequency: 6.620105259673629e-5
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+229T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2679T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-22T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-22T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-40312994-ACATCTAGGTAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40312994
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40312982
    reference: chr 1
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ACATCTAGGTAAG
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

1-40313002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313002
    reference: chr 1
allele count: 4
allele frequency: 3.313672211544834e-5
allele num: 120712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2690C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+218C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-33C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-33C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-40313011-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313011
    reference: chr 1
allele count: 1
allele frequency: 8.304958059961797e-6
allele num: 120410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2699G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+209G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-42G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-42G>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14449
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

1-40313012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313012
    reference: chr 1
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2700G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+208G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-43G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-43G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-40313015-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313015
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313014
    reference: chr 1
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+204delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2704delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-47delG
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-47delG
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14964
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: AC
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-40313018-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313018
    reference: chr 1
allele count: 3356
allele frequency: 2.795408732736935e-2
allele num: 120054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2706G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+202G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-49G>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-49G>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 3.25e1
  variant carriers: 630
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 1.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
num of homozygotes: 73
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

1-40313019-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313019
    reference: chr 1
allele count: 1
allele frequency: 8.32126749546491e-6
allele num: 120174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+201A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2707A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-50A>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-50A>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-40313021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313021
    reference: chr 1
allele count: 3
allele frequency: 2.503672052343437e-5
allele num: 119824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+199G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2709G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-52G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-52G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

1-40313021-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313019
    reference: chr 1
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-54_113-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-54_164-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+197_928+198delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.191-54_191-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.211-54_211-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-54_17-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*351-54_*351-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.683-54_683-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.929-54_929-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.929-54_929-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-54_17-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*589-54_*589-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*351-54_*351-53delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2711_-140-2710delCT
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*347-54_*347-53delCT
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15038
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: CAG
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-40313174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313174
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313174
    reference: chr 1
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-205C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.210+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-205C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.190+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-205C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*350+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*346+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*588+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.928+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2862C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*350+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.682+46C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-205C>T
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.928+46C>T
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-40313191-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313191
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313191
    reference: chr 1
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*346+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.682+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-222T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*588+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*350+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.210+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2879T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*350+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-222T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.190+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.928+29T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-222T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-222T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.928+29T>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/1-40313194-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313194
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313194
    reference: chr 1
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.682+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*350+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-225T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-225T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*350+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2882T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-225T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*346+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*588+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.928+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-225T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.190+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.210+26T>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.928+26T>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-40313199-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313199
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313199
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.190+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*588+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*350+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-230T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*350+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-230T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-230T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.928+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*346+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.928+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2887T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.682+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.210+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.928+21T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-230T>C
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-40313221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313221
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313221
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-252A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2909A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*345A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.681A>G
  hgvsp: ENST00000441669.2:c.681A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-252A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.209A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.927A>G
  hgvsp: ENST00000316891.5:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-252A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.927A>G
  hgvsp: ENST00000372818.1:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.189A>G
  hgvsp: ENST00000545233.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-252A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*587A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.927A>G
  hgvsp: ENST00000462797.1:c.927A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*349A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*349A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.927A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

1-40313230-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313230
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313230
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.200T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.180T>C
  hgvsp: ENST00000545233.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-261T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2918T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*340T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-261T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.918T>C
  hgvsp: ENST00000316891.5:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.918T>C
  hgvsp: ENST00000372818.1:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*578T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*336T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.918T>C
  hgvsp: ENST00000462797.1:c.918T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*340T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-261T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-261T>C
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.672T>C
  hgvsp: ENST00000441669.2:c.672T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu306Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

1-40313238-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313238
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313238
    reference: chr 1
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.910A>G
  hgvsp: ENSP00000361905.1:p.Asn304Asp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.910A>G
  hgvsp: ENSP00000473773.1:p.Asn304Asp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-269A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.172A>G
  hgvsp: ENSP00000439596.1:p.Asn58Asp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-269A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2926A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*332A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.910A>G
  hgvsp: ENSP00000321810.5:p.Asn304Asp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*332A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.664A>G
  hgvsp: ENSP00000388333.2:p.Asn222Asp
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.192A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-269A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*570A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-269A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn304Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

1-40313248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313248
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313248
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.900G>A
  hgvsp: ENST00000316891.5:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*318G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.162G>A
  hgvsp: ENST00000545233.1:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.900G>A
  hgvsp: ENST00000372818.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*322G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*560G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-279G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-279G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.654G>A
  hgvsp: ENST00000441669.2:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-279G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.900G>A
  hgvsp: ENST00000462797.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*322G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.182G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2936G>A
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-279G>A
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu300Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-40313258-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 40313258
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 40313258
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000439596
  ensembl transcript: ENST00000545233
  gene symbol: TRIT1
  hgvsc: ENST00000545233.1:c.152A>G
  hgvsp: ENSP00000439596.1:p.Lys51Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000388333
  ensembl transcript: ENST00000441669
  gene symbol: TRIT1
  hgvsc: ENST00000441669.2:c.644A>G
  hgvsp: ENSP00000388333.2:p.Lys215Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000491865
  gene symbol: TRIT1
  hgvsc: ENST00000491865.1:n.164-289A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473773
  ensembl transcript: ENST00000462797
  gene symbol: TRIT1
  hgvsc: ENST00000462797.1:c.890A>G
  hgvsp: ENSP00000473773.1:p.Lys297Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437700
  ensembl transcript: ENST00000537440
  gene symbol: TRIT1
  hgvsc: ENST00000537440.1:c.17-289A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000467774
  gene symbol: TRIT1
  hgvsc: ENST00000467774.1:n.172A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473745
  ensembl transcript: ENST00000489945
  gene symbol: TRIT1
  hgvsc: ENST00000489945.1:c.*308A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474264
  ensembl transcript: ENST00000495175
  gene symbol: TRIT1
  hgvsc: ENST00000495175.2:c.*312A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000361905
  ensembl transcript: ENST00000372818
  gene symbol: TRIT1
  hgvsc: ENST00000372818.1:c.890A>G
  hgvsp: ENSP00000361905.1:p.Lys297Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000321810
  ensembl transcript: ENST00000316891
  gene symbol: TRIT1
  hgvsc: ENST00000316891.5:c.890A>G
  hgvsp: ENSP00000321810.5:p.Lys297Arg
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000474151
  ensembl transcript: ENST00000486825
  gene symbol: TRIT1
  hgvsc: ENST00000486825.2:c.*550A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000437896
  ensembl transcript: ENST00000541099
  gene symbol: TRIT1
  hgvsc: ENST00000541099.1:c.-140-2946A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl transcript: ENST00000465417
  gene symbol: TRIT1
  hgvsc: ENST00000465417.1:n.113-289A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000440865
  ensembl transcript: ENST00000537223
  gene symbol: TRIT1
  hgvsc: ENST00000537223.1:c.17-289A>G
  variant of: http://identifiers.org/hgnc/20286
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000043514
  ensembl protein: ENSP00000473708
  ensembl transcript: ENST00000492612
  gene symbol: TRIT1
  hgvsc: ENST00000492612.2:c.*312A>G
  variant of: http://identifiers.org/hgnc/20286
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys297Arg
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 836
bin: 4.75e1
variant carriers: 301

GenotypeDepth
all individuals: 209
bin: 7.25e1
variant carriers: 142

GenotypeDepth
all individuals: 118
bin: 8.25e1
variant carriers: 78

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5450
bin: 9.75e1
variant carriers: 2876

GenotypeQuality
all individuals: 688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44699
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1541
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1492
allele frequency: 2.252483468703765e-2
allele num: 66238
num of homozygotes: 20

East Asian
type: Population
allele count: 952
allele frequency: 1.103896103896104e-1
allele num: 8624
num of homozygotes: 53

South Asian
type: Population
allele count: 155
allele frequency: 9.451219512195122e-3
allele num: 16400
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 209
allele frequency: 3.169548074006673e-2
allele num: 6594
num of homozygotes: 4

Other
type: Population
allele count: 23
allele frequency: 2.566964285714286e-2
allele num: 896
num of homozygotes: 1

Latino
type: Population
allele count: 89
allele frequency: 7.759372275501308e-3
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 46
allele frequency: 4.504504504504504e-3
allele num: 10212
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 6.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 1.644896e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeDepth
all individuals: 37076
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.545828e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: -1.416e0

FS
type: SiteQuality
SIO_000300: 4.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeDepth
all individuals: 124
bin: 6.25e1
variant carriers: 7

GenotypeDepth
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 9.75e1
variant carriers: 23

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66214
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South Asian
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ClippingRankSum
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VQSLOD
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele frequency: 1.966568338249754e-4
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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Other
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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DP
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele num: 11460
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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MQ
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FS
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66028
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East Asian
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Other
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Latino
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European (Finnish)
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African
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South Asian
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VQSLOD
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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Latino
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -4.237e0

InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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SIO_000300: 3.59e0

DP
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SIO_000300: 1.536295e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51828009231143e-5
allele num: 65864
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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ClippingRankSum
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SIO_000300: 2.04e-1

ReadPosRankSum
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FS
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MQRankSum
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QD
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele num: 65618
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African
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -1.985e0

ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

Other
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BaseQRankSum
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SIO_000300: -1.506e0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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SIO_000300: 1.515229e6

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 6.115833893951441e-5
allele num: 65404
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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African
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Latino
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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DP
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MQRankSum
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QD
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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East Asian
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African
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European (Non-Finnish)
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allele num: 64766
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South Asian
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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MQ
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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allele num: 64042
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East Asian
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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DP
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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East Asian
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.603797793174237e-5
allele num: 62352
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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African
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East Asian
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BaseQRankSum
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SIO_000300: 1.02e0

InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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East Asian
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African
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QD
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VQSLOD
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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African
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East Asian
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MQRankSum
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QD
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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African
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European (Finnish)
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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QD
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 4.937052579609973e-4
allele num: 16204
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.84819e6

VQSLOD
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FS
type: SiteQuality
SIO_000300: 6.237e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
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SIO_000300: -1.157e0

InbreedingCoeff
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SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.030119386703836e-5
allele num: 66004
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.058999999999999e0

ClippingRankSum
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.853313e6

InbreedingCoeff
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SIO_000300: 3.5e-3

BaseQRankSum
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SIO_000300: 3.76e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeDepth
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variant carriers: 14

GenotypeDepth
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variant carriers: 15

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.692628650904034e-4
allele num: 11504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
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allele count: 280
allele frequency: 2.730109204368175e-2
allele num: 10256
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
num of homozygotes: 0

VQSLOD
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SIO_000300: 4.32e0

BaseQRankSum
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SIO_000300: -2.113e0

ReadPosRankSum
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SIO_000300: 2.98e-1

ClippingRankSum
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FS
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SIO_000300: 1.594e0

MQRankSum
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SIO_000300: 2.87e-1

InbreedingCoeff
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SIO_000300: 2.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.900124e6

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 2.61e0

QD
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SIO_000300: 1.502e1

VQSLOD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 2.7e-1

InbreedingCoeff
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SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.897156e6

MQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
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BaseQRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 2.61e0

ClippingRankSum
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SIO_000300: 2.7e-1

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 6.121449559255632e-5
allele num: 16336
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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MQ
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FS
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DP
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SIO_000300: 1.9011e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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DP
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6604
num of homozygotes: 0

South Asian
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African
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Other
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European (Non-Finnish)
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allele num: 66526
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Latino
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East Asian
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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Latino
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European (Finnish)
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South Asian
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East Asian
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8654
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African
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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Other
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DP
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QD
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FS
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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East Asian
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MQRankSum
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ClippingRankSum
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FS
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QD
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -6.79e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
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SIO_000300: 5.923e1

FS
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SIO_000300: 2.939e0

QD
type: SiteQuality
SIO_000300: 9.99e0

VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.48e0

ReadPosRankSum
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SIO_000300: 7.2e-1

DP
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SIO_000300: 1.923994e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
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allele frequency: 1.817741153659719e-4
allele num: 16504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 7
allele frequency: 1.059642749016046e-3
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 35
allele frequency: 5.249737513124343e-4
allele num: 66670
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 1.106e0

VQSLOD
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ClippingRankSum
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SIO_000300: -1.86e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQ
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SIO_000300: 5.945e1

MQRankSum
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FS
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SIO_000300: 7.786e0

BaseQRankSum
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SIO_000300: 1.3e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.62e0

MQ
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MQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499640028797696e-5
allele num: 66672
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
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FS
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MQ
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SIO_000300: 5.686e1

ClippingRankSum
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SIO_000300: -5.56e-1

ReadPosRankSum
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SIO_000300: 4.4e-2

VQSLOD
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QD
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MQRankSum
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DP
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SIO_000300: 1.921768e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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SIO_000300: 5.685e1

DP
type: SiteQuality
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.917967e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ClippingRankSum
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SIO_000300: -6.7e-1

QD
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SIO_000300: 1.716e1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.7e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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DP
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SIO_000300: 1.911892e6

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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SIO_000300: -4.638e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 4.846839860411012e-4
allele num: 10316
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South Asian
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66428
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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African
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Latino
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allele num: 11524
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European (Finnish)
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.421e1

DP
type: SiteQuality
SIO_000300: 1.888388e6

MQRankSum
type: SiteQuality
SIO_000300: -2.324e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: -6.414e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.028636021100226e-5
allele num: 66350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

FS
type: SiteQuality
SIO_000300: 1.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.347e0

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 1.870489e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2176
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511076188461422e-5
allele num: 66178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.841887e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.426e1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 2.318e0

GenotypeDepth
all individuals: 316
bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7946
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.023e0

VQSLOD
type: SiteQuality
SIO_000300: -4.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.636e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.341e1

DP
type: SiteQuality
SIO_000300: 1.841801e6

GenotypeDepth
all individuals: 4433
bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.836072e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
all individuals: 2206
bin: 4.25e1
variant carriers: 226

GenotypeDepth
all individuals: 1198
bin: 4.75e1
variant carriers: 115

GenotypeDepth
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variant carriers: 12

GenotypeDepth
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variant carriers: 12

GenotypeDepth
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variant carriers: 38

GenotypeDepth
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variant carriers: 662

GenotypeDepth
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variant carriers: 10

GenotypeDepth
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variant carriers: 19

GenotypeDepth
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variant carriers: 550

GenotypeQuality
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variant carriers: 3229

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 1141
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 89
allele frequency: 8.696501856556576e-3
allele num: 10234
num of homozygotes: 1

Latino
type: Population
allele count: 105
allele frequency: 9.159106769016051e-3
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 146
allele frequency: 2.223575997563204e-2
allele num: 6566
num of homozygotes: 3

South Asian
type: Population
allele count: 829
allele frequency: 5.048721071863581e-2
allele num: 16420
num of homozygotes: 29

Other
type: Population
allele count: 21
allele frequency: 2.348993288590604e-2
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2165
allele frequency: 3.281894251758428e-2
allele num: 65968
num of homozygotes: 40

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

QD
type: SiteQuality
SIO_000300: 1.566e1

DP
type: SiteQuality
SIO_000300: 1.844063e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.036e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2903
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513500423780119e-5
allele num: 66072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.554010565304512e-5
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num of homozygotes: 0

South Asian
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VQSLOD
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DP
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MQRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Latino
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allele num: 11450
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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European (Finnish)
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MQ
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
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allele num: 66660
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European (Finnish)
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East Asian
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South Asian
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Latino
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Other
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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FS
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MQ
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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FS
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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African
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South Asian
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.621e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.333224e6

GenotypeDepth
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bin: 7.5e0
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5807
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1444
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
SIO_000300: 3.335913e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 5.279e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -2.04e-2

QD
type: SiteQuality
SIO_000300: 1.605e1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5010
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2210
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2494
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.334e1

FS
type: SiteQuality
SIO_000300: 1.466e0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 3.336183e6

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5807
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3680
bin: 9.75e1
variant carriers: 4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.993766482857828e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.336739e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

QD
type: SiteQuality
SIO_000300: 1.396e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.108e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 3.336302e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

QD
type: SiteQuality
SIO_000300: 6.04e0