1-67155862-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155862
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155859
    reference: chr 1
allele count: 34258
allele frequency: 2.823725293021876e-1
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.460-8_460-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.205-8_205-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.844-8_844-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1444-8_1444-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.814-8_814-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.847-8_847-6delCCT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1537-8_1537-6delCCT
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 6.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 2.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32982
  bin: 9.75e1
  variant carriers: 25051
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 2.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 5.25e1
  variant carriers: 459
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 8.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 5.75e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55904
  bin: 9.75e1
  variant carriers: 29161
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 4
hgvs: c.1444-8_1444-6delCCT
num of homozygotes: 4965
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: TCTC
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-67155867-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155867
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155867
    reference: chr 1
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1537-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.844-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.814-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.460-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.847-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.205-6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1444-6T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51501
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1444-6T>C
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

1-67155874-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155874
    reference: chr 1
allele count: 53
allele frequency: 4.373298126908161e-4
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.848C>G
  hgvsp: ENSP00000360078.1:p.Ser283Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.206C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1445C>G
  hgvsp: ENSP00000360076.3:p.Ser482Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.845C>G
  hgvsp: ENSP00000360075.3:p.Ser282Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.461C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.815C>G
  hgvsp: ENSP00000360074.3:p.Ser272Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1538C>G
  hgvsp: ENSP00000237247.6:p.Ser513Cys
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15553
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser482Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

1-67155897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155897
    reference: chr 1
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.229C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.871C>T
  hgvsp: ENSP00000360078.1:p.His291Tyr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.868C>T
  hgvsp: ENSP00000360075.3:p.His290Tyr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.838C>T
  hgvsp: ENSP00000360074.3:p.His280Tyr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1561C>T
  hgvsp: ENSP00000237247.6:p.His521Tyr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.484C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1468C>T
  hgvsp: ENSP00000360076.3:p.His490Tyr
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5608
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His490Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-67155898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155898
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155898
    reference: chr 1
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1469A>G
  hgvsp: ENSP00000360076.3:p.His490Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.839A>G
  hgvsp: ENSP00000360074.3:p.His280Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.230A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1562A>G
  hgvsp: ENSP00000237247.6:p.His521Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.869A>G
  hgvsp: ENSP00000360075.3:p.His290Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.872A>G
  hgvsp: ENSP00000360078.1:p.His291Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.485A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15501
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His490Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

1-67155903-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155903
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.874T>G
  hgvsp: ENSP00000360075.3:p.Ser292Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.490T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1474T>G
  hgvsp: ENSP00000360076.3:p.Ser492Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.844T>G
  hgvsp: ENSP00000360074.3:p.Ser282Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.235T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1567T>G
  hgvsp: ENSP00000237247.6:p.Ser523Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.877T>G
  hgvsp: ENSP00000360078.1:p.Ser293Ala
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15499
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser492Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-67155905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155905
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155905
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.876C>T
  hgvsp: ENST00000371036.3:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.846C>T
  hgvsp: ENST00000371035.3:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.237C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1476C>T
  hgvsp: ENST00000371037.4:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.879C>T
  hgvsp: ENST00000371039.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1569C>T
  hgvsp: ENST00000237247.6:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.492C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15490
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser492Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-67155913-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155913
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155913
    reference: chr 1
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.245C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.854C>A
  hgvsp: ENSP00000360074.3:p.Pro285His
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1577C>A
  hgvsp: ENSP00000237247.6:p.Pro526His
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.887C>A
  hgvsp: ENSP00000360078.1:p.Pro296His
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.884C>A
  hgvsp: ENSP00000360075.3:p.Pro295His
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1484C>A
  hgvsp: ENSP00000360076.3:p.Pro495His
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.500C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro495His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-67155918-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155918
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.505A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.889A>G
  hgvsp: ENSP00000360075.3:p.Ile297Val
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.892A>G
  hgvsp: ENSP00000360078.1:p.Ile298Val
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.859A>G
  hgvsp: ENSP00000360074.3:p.Ile287Val
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1582A>G
  hgvsp: ENSP00000237247.6:p.Ile528Val
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1489A>G
  hgvsp: ENSP00000360076.3:p.Ile497Val
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.250A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51608
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile497Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-67155919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155919
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.251T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1490T>C
  hgvsp: ENSP00000360076.3:p.Ile497Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.890T>C
  hgvsp: ENSP00000360075.3:p.Ile297Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.893T>C
  hgvsp: ENSP00000360078.1:p.Ile298Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1583T>C
  hgvsp: ENSP00000237247.6:p.Ile528Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.506T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.860T>C
  hgvsp: ENSP00000360074.3:p.Ile287Thr
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile497Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-67155925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155925
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1589C>G
  hgvsp: ENSP00000237247.6:p.Pro530Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.866C>G
  hgvsp: ENSP00000360074.3:p.Pro289Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.257C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1496C>G
  hgvsp: ENSP00000360076.3:p.Pro499Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.896C>G
  hgvsp: ENSP00000360075.3:p.Pro299Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.899C>G
  hgvsp: ENSP00000360078.1:p.Pro300Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.512C>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51607
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro499Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

1-67155932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155932
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.906G>A
  hgvsp: ENST00000371039.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.873G>A
  hgvsp: ENST00000371035.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.903G>A
  hgvsp: ENST00000371036.3:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1503G>A
  hgvsp: ENST00000371037.4:c.1503G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.519G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.264G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1596G>A
  hgvsp: ENST00000237247.6:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala501Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-67155933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155933
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155933
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1597C>T
  hgvsp: ENSP00000237247.6:p.Arg533Trp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.904C>T
  hgvsp: ENSP00000360075.3:p.Arg302Trp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.520C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.874C>T
  hgvsp: ENSP00000360074.3:p.Arg292Trp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1504C>T
  hgvsp: ENSP00000360076.3:p.Arg502Trp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.265C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.907C>T
  hgvsp: ENSP00000360078.1:p.Arg303Trp
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg502Trp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

1-67160219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160219
    reference: chr 1
allele count: 7
allele frequency: 1.199410575374387e-4
allele num: 58362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-898C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+32C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-898C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+32C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-898C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21196
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8073
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

3-129325355-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325355
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325355
    reference: chr 3
allele count: 2
allele frequency: 5.409499080385156e-5
allele num: 36972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.128G>C
  hgvsp: ENSP00000376931.1:p.Arg43Pro
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.128G>C
  hgvsp: ENSP00000317128.4:p.Arg43Pro
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg43Pro
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2568
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-129325355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325355
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325355
    reference: chr 3
allele count: 1
allele frequency: 2.704749540192578e-5
allele num: 36972
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.128G>A
  hgvsp: ENSP00000317128.4:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.128G>A
  hgvsp: ENSP00000376931.1:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Arg43Gln
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 23490
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

3-129325358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325358
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 34144
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.125C>T
  hgvsp: ENSP00000317128.4:p.Ala42Val
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.125C>T
  hgvsp: ENSP00000376931.1:p.Ala42Val
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20169
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Ala42Val
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2814
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

3-129325362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325362
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325362
    reference: chr 3
allele count: 1
allele frequency: 3.198362438431523e-5
allele num: 31266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.121G>A
  hgvsp: ENSP00000376931.1:p.Ala41Thr
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.121G>A
  hgvsp: ENSP00000317128.4:p.Ala41Thr
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
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genotype quality: GenotypeQuality
  all individuals: 88
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genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala41Thr
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 3.924646781789639e-4
  allele num: 2548
  num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-129325365-C-CCAGGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325371
    reference: chr 3
allele count: 1
allele frequency: 3.388681802778719e-5
allele num: 29510
alternate allele: CCAGGAG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.112_117dupCTCCTG
  hgvsp: ENSP00000376931.1:p.Leu38_Leu39dup
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.112_117dupCTCCTG
  hgvsp: ENSP00000317128.4:p.Leu38_Leu39dup
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20008
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu38_Leu39dup
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 744
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-129325365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325365
    reference: chr 3
allele count: 1
allele frequency: 3.388681802778719e-5
allele num: 29510
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.118G>A
  hgvsp: ENSP00000317128.4:p.Gly40Arg
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.118G>A
  hgvsp: ENSP00000376931.1:p.Gly40Arg
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20008
  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21147
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 18
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genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly40Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 4.198152812762384e-4
  allele num: 2382
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-129325374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129325374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129325374
    reference: chr 3
allele count: 2
allele frequency: 1.016570092507878e-4
allele num: 19674
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.109C>T
  hgvsp: ENST00000324093.4:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.109C>T
  hgvsp: ENST00000393239.1:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25246
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 757
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 775
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genotype quality: GenotypeQuality
  all individuals: 18936
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genotype quality: GenotypeQuality
  all individuals: 350
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 841
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genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27450
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 23
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu37Leu
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 428
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

1-67160225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160225
    reference: chr 1
allele count: 3
allele frequency: 6.094835642598838e-5
allele num: 49222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-892T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-892T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-892T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+38T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18135
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24584
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 9254
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genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 178
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genotype quality: GenotypeQuality
  all individuals: 5219
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genotype quality: GenotypeQuality
  all individuals: 6800
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/1-67160227-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160227
    reference: chr 1
allele count: 3
allele frequency: 6.293530250902073e-5
allele num: 47668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-890C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+40C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-890C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-890C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+40C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24649
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 204
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
  all individuals: 4447
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genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4224
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 20077
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genotype quality: GenotypeQuality
  all individuals: 144
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genotype quality: GenotypeQuality
  all individuals: 260
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 470
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-67160235-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160235
    reference: chr 1
allele count: 48
allele frequency: 1.13244939366772e-3
allele num: 42386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-882C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-882C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-882C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+48C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26124
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16741
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8487
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8892
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6020
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16035
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/1-67160985-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160985
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160985
    reference: chr 1
allele count: 6
allele frequency: 1.019714479945615e-4
allele num: 58840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-47C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+798C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-132C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+798C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-132C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.252C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-132C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22176
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

1-67160987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160987
    reference: chr 1
allele count: 6
allele frequency: 1.019056353816366e-4
allele num: 58878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-45C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+800C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-130C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-130C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.254C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+800C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-130C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-67160988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160988
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160988
    reference: chr 1
allele count: 6
allele frequency: 1.008945987758122e-4
allele num: 59468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+801G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-129G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-44G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-129G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+801G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.255G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-129G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22227
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

1-67160993-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160993
    reference: chr 1
allele count: 1
allele frequency: 1.642359742477992e-5
allele num: 60888
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+806T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-124T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-124T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.260T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-39T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-124T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+806T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

1-67160996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160996
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160996
    reference: chr 1
allele count: 1
allele frequency: 1.631747274982051e-5
allele num: 61284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+809C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.263C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-121C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+809C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-121C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-36C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-121C>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12753
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-67160998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67160998
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67160998
    reference: chr 1
allele count: 1
allele frequency: 1.611707442864971e-5
allele num: 62046
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-119T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-119T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-34T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-119T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+811T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.265T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+811T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

1-67161004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161004
    reference: chr 1
allele count: 44
allele frequency: 6.909113749136361e-4
allele num: 63684
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-113G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-113G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.271G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+817G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+817G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-113G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12032
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23441
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-67161004-G-GCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161007
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 63684
alternate allele: GCCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-110_1664-108dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-110_941-108dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-25_-23dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+820_1039+822dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.274_276dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-110_1571-108dupTCC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+820_1036+822dupTCC
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23441
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-67161006-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161006
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161006
    reference: chr 1
allele count: 7
allele frequency: 1.078582434514638e-4
allele num: 64900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+819C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+819C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-26C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.273C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-111C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-111C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-111C>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11649
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 21233
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-67161021-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161021
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161021
    reference: chr 1
allele count: 1
allele frequency: 1.36795162923039e-5
allele num: 73102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-96T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.288T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+834T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+834T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-11T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-96T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-96T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-67161023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161023
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161023
    reference: chr 1
allele count: 1
allele frequency: 1.349381983051762e-5
allele num: 74108
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-94G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-94G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-94G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.-9G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.290G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+836G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+836G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

1-67161035-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161035
    reference: chr 1
allele count: 2
allele frequency: 2.428127428127428e-5
allele num: 82368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+848A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-82A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+848A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.302A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.4A>T
  hgvsp: ENSP00000395525.2:p.Thr2Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-82A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-82A>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr2Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-67161036-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161036
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161036
    reference: chr 1
allele count: 1
allele frequency: 1.207933708598072e-5
allele num: 82786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.5C>A
  hgvsp: ENSP00000395525.2:p.Thr2Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-81C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-81C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+849C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-81C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.303C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+849C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
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genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr2Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-67161054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161054
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161054
    reference: chr 1
allele count: 1
allele frequency: 9.678293523285975e-6
allele num: 103324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.321T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+867T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.23T>C
  hgvsp: ENSP00000395525.2:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-63T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+867T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-63T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-63T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile8Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-67161062-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161062
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161060
    reference: chr 1
allele count: 1
allele frequency: 9.085788010394142e-6
allele num: 110062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-48_941-47delTC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.38_39delTC
  hgvsp: ENSP00000395525.2:p.Leu13ProfsTer4
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+882_1039+883delTC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.336_337delTC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-48_1664-47delTC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+882_1036+883delTC
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-48_1571-47delTC
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu13ProfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: TTC
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

1-67161072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161072
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161072
    reference: chr 1
allele count: 1
allele frequency: 8.563256777817739e-6
allele num: 116778
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-45C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-45C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.41C>T
  hgvsp: ENSP00000395525.2:p.Pro14Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+885C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.339C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+885C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-45C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro14Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-67161088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161088
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161088
    reference: chr 1
allele count: 3
allele frequency: 2.490163852781513e-5
allele num: 120474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+901C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.355C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+901C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.57C>T
  hgvsp: ENST00000435165.2:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-29C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-29C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-29C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser19Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-67161095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161095
    reference: chr 1
allele count: 5
allele frequency: 4.134418204670239e-5
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-22G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+908G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+908G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.64G>A
  hgvsp: ENSP00000395525.2:p.Ala22Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-22G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.362G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-22G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala22Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-67161095-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161095
    reference: chr 1
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-22G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.362G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.64G>T
  hgvsp: ENSP00000395525.2:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-22G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+908G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+908G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-22G>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3738
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala22Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

1-67161103-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161103
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161103
    reference: chr 1
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.370T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.72T>G
  hgvsp: ENST00000435165.2:c.72T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-14T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-14T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+916T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+916T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-14T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr24Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-67161104-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161104
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161104
    reference: chr 1
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-13C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+917C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+917C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.73C>A
  hgvsp: ENSP00000395525.2:p.Pro25Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.371C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-13C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-13C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro25Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

1-67161112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161112
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161112
    reference: chr 1
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.379T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-5T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.81T>C
  hgvsp: ENST00000435165.2:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+925T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-5T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-5T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+925T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1571-5T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

1-67161113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161113
    reference: chr 1
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.941-4A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+926A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1664-4A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1571-4A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.380A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.82A>G
  hgvsp: ENSP00000395525.2:p.Thr28Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+926A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr28Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

1-67161118-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161118
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161118
    reference: chr 1
allele count: 8
allele frequency: 6.596414848529824e-5
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.87G>C
  hgvsp: ENSP00000395525.2:p.Glu29Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.385G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1572G>C
  hgvsp: ENSP00000360076.3:p.Glu524Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+931G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.942G>C
  hgvsp: ENSP00000360074.3:p.Glu314Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.3G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1665G>C
  hgvsp: ENSP00000237247.6:p.Glu555Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+931G>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu524Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

1-67161121-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161121
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161121
    reference: chr 1
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+934T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.388T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.945T>C
  hgvsp: ENST00000371035.3:c.945T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.90T>C
  hgvsp: ENST00000435165.2:c.90T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1668T>C
  hgvsp: ENST00000237247.6:c.1668T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1575T>C
  hgvsp: ENST00000371037.4:c.1575T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.6T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+934T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn525Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-67161129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161129
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161129
    reference: chr 1
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1676C>T
  hgvsp: ENSP00000237247.6:p.Pro559Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+942C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.14C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1583C>T
  hgvsp: ENSP00000360076.3:p.Pro528Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.396C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.953C>T
  hgvsp: ENSP00000360074.3:p.Pro318Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.98C>T
  hgvsp: ENSP00000395525.2:p.Pro33Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+942C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro528Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

1-67161133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161133
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161133
    reference: chr 1
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+946C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.400C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.18C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1680C>T
  hgvsp: ENST00000237247.6:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1587C>T
  hgvsp: ENST00000371037.4:c.1587C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+946C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.102C>T
  hgvsp: ENST00000435165.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.957C>T
  hgvsp: ENST00000371035.3:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser529Ser
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

1-67161137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161137
    reference: chr 1
allele count: 11
allele frequency: 9.070070416728508e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1591G>A
  hgvsp: ENSP00000360076.3:p.Val531Ile
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.961G>A
  hgvsp: ENSP00000360074.3:p.Val321Ile
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.22G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1684G>A
  hgvsp: ENSP00000237247.6:p.Val562Ile
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+950G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+950G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.404G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.106G>A
  hgvsp: ENSP00000395525.2:p.Val36Ile
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val531Ile
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/1-67161148-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161148
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161148
    reference: chr 1
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+961C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.972C>A
  hgvsp: ENSP00000360074.3:p.Asp324Glu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1695C>A
  hgvsp: ENSP00000237247.6:p.Asp565Glu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.415C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+961C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.117C>A
  hgvsp: ENSP00000395525.2:p.Asp39Glu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1602C>A
  hgvsp: ENSP00000360076.3:p.Asp534Glu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.33C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp534Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

1-67161152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161152
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161152
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1606G>A
  hgvsp: ENSP00000360076.3:p.Gly536Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.121G>A
  hgvsp: ENSP00000395525.2:p.Gly41Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.976G>A
  hgvsp: ENSP00000360074.3:p.Gly326Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.37G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1699G>A
  hgvsp: ENSP00000237247.6:p.Gly567Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.419G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+965G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+965G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly536Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-67161181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161181
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161181
    reference: chr 1
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1000+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.145+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.443+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.61+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+994G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1630+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1723+5G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+994G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1630+5G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-67161212-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161212
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161212
    reference: chr 1
allele count: 1
allele frequency: 8.37408722449253e-6
allele num: 119416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.61+36A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1000+36A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+1025A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.145+36A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+1025A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1723+36A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1630+36A>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.443+36A>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

1-67161214-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161214
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161214
    reference: chr 1
allele count: 1
allele frequency: 8.395318770253707e-6
allele num: 119114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+1027T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+1027T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1630+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1723+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1000+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.61+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.443+38T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.145+38T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

1-67161220-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161220
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161220
    reference: chr 1
allele count: 1
allele frequency: 8.435828651448432e-6
allele num: 118542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1000+44T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.61+44T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+1033T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.145+44T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.443+44T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1723+44T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+1033T>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1630+44T>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-67161224-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67161224
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67161224
    reference: chr 1
allele count: 1
allele frequency: 8.490982576503753e-6
allele num: 117772
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1630+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1000+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1723+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1039+1037C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468570
  gene symbol: SGIP1
  hgvsc: ENST00000468570.1:n.61+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000320161
  gene symbol: SGIP1
  hgvsc: ENST00000320161.10:n.443+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.145+48C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1036+1037C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6531
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6099
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18212
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-67184933-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67184933
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67184933
    reference: chr 1
allele count: 109
allele frequency: 1.542161856253537e-3
allele num: 70680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.146-44G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1040-44G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1001-44G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1037-44G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1724-44G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1631-44G>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20286
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 20822
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8990
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6191
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 9.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

1-67184944-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67184944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67184944
    reference: chr 1
allele count: 1
allele frequency: 1.367876781659508e-5
allele num: 73106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1040-33T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1724-33T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1001-33T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1631-33T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.146-33T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1037-33T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21424
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7997
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-67155936-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155936
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155936
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.523G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1507G>C
  hgvsp: ENSP00000360076.3:p.Ala503Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.877G>C
  hgvsp: ENSP00000360074.3:p.Ala293Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.910G>C
  hgvsp: ENSP00000360078.1:p.Ala304Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.907G>C
  hgvsp: ENSP00000360075.3:p.Ala303Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1600G>C
  hgvsp: ENSP00000237247.6:p.Ala534Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.268G>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala503Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-67155945-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155945
    reference: chr 1
allele count: 6
allele frequency: 4.942502224126001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.916A>T
  hgvsp: ENSP00000360075.3:p.Thr306Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.886A>T
  hgvsp: ENSP00000360074.3:p.Thr296Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.532A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1516A>T
  hgvsp: ENSP00000360076.3:p.Thr506Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1609A>T
  hgvsp: ENSP00000237247.6:p.Thr537Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.919A>T
  hgvsp: ENSP00000360078.1:p.Thr307Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.277A>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr506Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-67155959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155959
    reference: chr 1
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1623G>A
  hgvsp: ENST00000237247.6:c.1623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.933G>A
  hgvsp: ENST00000371039.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.546G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.930G>A
  hgvsp: ENST00000371036.3:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.291G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1530G>A
  hgvsp: ENST00000371037.4:c.1530G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.900G>A
  hgvsp: ENST00000371035.3:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15457
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51605
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5618
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser510Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-67155963-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155963
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155963
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.550A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.295A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1534A>T
  hgvsp: ENSP00000360076.3:p.Thr512Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.904A>T
  hgvsp: ENSP00000360074.3:p.Thr302Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.934A>T
  hgvsp: ENSP00000360075.3:p.Thr312Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.937A>T
  hgvsp: ENSP00000360078.1:p.Thr313Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1627A>T
  hgvsp: ENSP00000237247.6:p.Thr543Ser
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr512Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-67155977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155977
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155977
    reference: chr 1
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.948C>T
  hgvsp: ENST00000371036.3:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1548C>T
  hgvsp: ENST00000371037.4:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.951C>T
  hgvsp: ENST00000371039.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.918C>T
  hgvsp: ENST00000371035.3:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.309C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.564C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1641C>T
  hgvsp: ENST00000237247.6:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51605
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser516Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-67155978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155978
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.565G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1549G>A
  hgvsp: ENSP00000360076.3:p.Ala517Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.919G>A
  hgvsp: ENSP00000360074.3:p.Ala307Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.952G>A
  hgvsp: ENSP00000360078.1:p.Ala318Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.949G>A
  hgvsp: ENSP00000360075.3:p.Ala317Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1642G>A
  hgvsp: ENSP00000237247.6:p.Ala548Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.310G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5535
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala517Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-67155978-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155978
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1549G>T
  hgvsp: ENSP00000360076.3:p.Ala517Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.919G>T
  hgvsp: ENSP00000360074.3:p.Ala307Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.952G>T
  hgvsp: ENSP00000360078.1:p.Ala318Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.949G>T
  hgvsp: ENSP00000360075.3:p.Ala317Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.565G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.310G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1642G>T
  hgvsp: ENSP00000237247.6:p.Ala548Ser
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala517Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-67184946-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67184946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67184946
    reference: chr 1
allele count: 1
allele frequency: 1.344447432105405e-5
allele num: 74380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1724-31A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1631-31A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1001-31A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.146-31A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1037-31A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1040-31A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14310
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-67184946-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67184946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67184946
    reference: chr 1
allele count: 1
allele frequency: 1.344447432105405e-5
allele num: 74380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1631-31A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.146-31A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1724-31A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1040-31A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1001-31A>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1037-31A>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-67184947-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67184947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67184947
    reference: chr 1
allele count: 1
allele frequency: 1.342930812204555e-5
allele num: 74464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.1037-30T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1631-30T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.1040-30T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1724-30T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000395525
  ensembl transcript: ENST00000435165
  gene symbol: SGIP1
  hgvsc: ENST00000435165.2:c.146-30T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.1001-30T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-67155993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67155993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67155993
    reference: chr 1
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.1657A>G
  hgvsp: ENSP00000237247.6:p.Thr553Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.1564A>G
  hgvsp: ENSP00000360076.3:p.Thr522Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.934A>G
  hgvsp: ENSP00000360074.3:p.Thr312Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.967A>G
  hgvsp: ENSP00000360078.1:p.Thr323Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.964A>G
  hgvsp: ENSP00000360075.3:p.Thr322Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000480548
  gene symbol: SGIP1
  hgvsc: ENST00000480548.1:n.580A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000487507
  gene symbol: SGIP1
  hgvsc: ENST00000487507.1:n.325A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5425
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr522Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 239
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 253
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 608
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 8

African
type: Population
allele count: 2017
allele frequency: 1.938304824139919e-1
allele num: 10406
num of homozygotes: 194

Latino
type: Population
allele count: 3377
allele frequency: 2.916738642252548e-1
allele num: 11578
num of homozygotes: 495

European (Finnish)
type: Population
allele count: 1785
allele frequency: 2.698820683398851e-1
allele num: 6614
num of homozygotes: 238

Other
type: Population
allele count: 244
allele frequency: 2.693156732891832e-1
allele num: 906
num of homozygotes: 37

East Asian
type: Population
allele count: 1772
allele frequency: 2.049028677150786e-1
allele num: 8648
num of homozygotes: 201

European (Non-Finnish)
type: Population
allele count: 19797
allele frequency: 2.968867160553073e-1
allele num: 66682
num of homozygotes: 2915

South Asian
type: Population
allele count: 5266
allele frequency: 3.19383794274624e-1
allele num: 16488
num of homozygotes: 885

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

QD
type: SiteQuality
SIO_000300: 1.968e1

FS
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 7.467634e6

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.8161e6

MQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

MQ
type: SiteQuality
SIO_000300: 5.862e1

VQSLOD
type: SiteQuality
SIO_000300: -1.826e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.23e-1

FS
type: SiteQuality
SIO_000300: 4.13e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51508
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 5490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 53
allele frequency: 6.142790913305517e-3
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 4.820619e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

FS
type: SiteQuality
SIO_000300: 1.139e0

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

QD
type: SiteQuality
SIO_000300: 1.144e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.266e1

DP
type: SiteQuality
SIO_000300: 4.80926e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.484e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e0

DP
type: SiteQuality
SIO_000300: 4.808854e6

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -4.752e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.034e1

FS
type: SiteQuality
SIO_000300: 1.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 4.808282e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 1.101e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.644e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.806333e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.355e1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.132999999999999e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.659e-1

FS
type: SiteQuality
SIO_000300: 7.73e-1

DP
type: SiteQuality
SIO_000300: 4.802206e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 4.801459e6

FS
type: SiteQuality
SIO_000300: 8.789999999999999e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -7.823e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.48e0

VQSLOD
type: SiteQuality
SIO_000300: -2.523e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.959e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.407e1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.271e0

DP
type: SiteQuality
SIO_000300: 4.801429e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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Other
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.892e0

ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.741e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.007e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

DP
type: SiteQuality
SIO_000300: 4.801276e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.948e0

QD
type: SiteQuality
SIO_000300: 1.348e1

FS
type: SiteQuality
SIO_000300: 1.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

VQSLOD
type: SiteQuality
SIO_000300: -8.993e-1

DP
type: SiteQuality
SIO_000300: 4.801124e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 275
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.130508887265644e-4
allele num: 32856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.656000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.311e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 6.31089e5

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.289473684210526e-4
allele num: 3040
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.906976744186046e-4
allele num: 3440
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.7824e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.289473684210526e-4
allele num: 3040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 4.7824e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.576e0

QD
type: SiteQuality
SIO_000300: 1.236e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.885e-1

DP
type: SiteQuality
SIO_000300: 4.46993e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 6.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.16423e5

Latino
type: Population
allele count: 1
allele frequency: 3.888024883359253e-4
allele num: 2572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.752e1

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.94997e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 3.94997e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.752e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.408450704225352e-3
allele num: 1420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

DP
type: SiteQuality
SIO_000300: 3.04747e5

FS
type: SiteQuality
SIO_000300: 8.801e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.311e-1

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 6.871278057718735e-4
allele num: 4366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.542e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

FS
type: SiteQuality
SIO_000300: 5.434e0

DP
type: SiteQuality
SIO_000300: 5.97122e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 888
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.677011325194882e-5
allele num: 27196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.861664712778429e-4
allele num: 3412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 5.95871e5

VQSLOD
type: SiteQuality
SIO_000300: -2.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.393e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

QD
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4296
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4191
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 228
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 5.747126436781609e-3
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.969121140142518e-4
allele num: 3368
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.551189245087901e-3
allele num: 3868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 5.981703026038001e-3
allele num: 2842
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.43915003219575e-4
allele num: 3106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 8.166598611678236e-4
allele num: 24490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.2469e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.163e0

DP
type: SiteQuality
SIO_000300: 5.90022e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 1797
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.92628740208039e-4
allele num: 31148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
SIO_000300: 1.558e1

FS
type: SiteQuality
SIO_000300: 3.995e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 9.25661e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

GenotypeQuality
all individuals: 5471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.69434090138936e-4
allele num: 5902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.632055480639569e-5
allele num: 31146
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.914241960183767e-4
allele num: 10448
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.072e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

DP
type: SiteQuality
SIO_000300: 9.28522e5

GenotypeQuality
all individuals: 3226
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5899
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variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.326711375427053e-5
allele num: 31612
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.601281024819856e-3
allele num: 2498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.308e-1

QD
type: SiteQuality
SIO_000300: 1.792e1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

FS
type: SiteQuality
SIO_000300: 8.625e0

DP
type: SiteQuality
SIO_000300: 9.32949e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2583
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 286
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variant carriers: 0

GenotypeQuality
all individuals: 7574
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.188183807439825e-4
allele num: 4570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.044e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.42199e5

QD
type: SiteQuality
SIO_000300: 2.591e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2052
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4646
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10710
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.651800462504129e-4
allele num: 6054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.938e1

VQSLOD
type: SiteQuality
SIO_000300: -2.431e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

DP
type: SiteQuality
SIO_000300: 9.54008e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 876
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 685
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variant carriers: 0

GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19863
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GenotypeQuality
all individuals: 1851
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variant carriers: 0

GenotypeQuality
all individuals: 5700
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variant carriers: 0

GenotypeQuality
all individuals: 289
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GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2666
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.629726205997392e-4
allele num: 6136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.828e0

MQRankSum
type: SiteQuality
SIO_000300: -1.505e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 6.68e0

FS
type: SiteQuality
SIO_000300: 6.786e0

DP
type: SiteQuality
SIO_000300: 9.62368e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

VQSLOD
type: SiteQuality
SIO_000300: -3.112e0

GenotypeQuality
all individuals: 977
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
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variant carriers: 0

GenotypeQuality
all individuals: 799
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GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 815
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variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 1

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.25123818099955e-4
allele num: 4442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

African
type: Population
allele count: 43
allele frequency: 6.847133757961784e-3
allele num: 6280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.588e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 3.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

DP
type: SiteQuality
SIO_000300: 9.91663e5

GenotypeQuality
all individuals: 815
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1988
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variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 3.086e0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.588e0

DP
type: SiteQuality
SIO_000300: 9.91663e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 139
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.885836315364192e-5
allele num: 34652
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.449591280653951e-4
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4748
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 9.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

DP
type: SiteQuality
SIO_000300: 1.004762e6

VQSLOD
type: SiteQuality
SIO_000300: -5.867e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 930
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.426940639269406e-4
allele num: 7008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.101783e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.289e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 1969
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5946
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.404494382022472e-4
allele num: 7120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.116955e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

VQSLOD
type: SiteQuality
SIO_000300: -4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.745e1

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 18037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.473272198613286e-5
allele num: 44710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.676e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.531e0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.201501e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

GenotypeQuality
all individuals: 1928
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17776
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GenotypeQuality
all individuals: 866
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.222222222222222e-5
allele num: 45000
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 1.209705e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.532e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

QD
type: SiteQuality
SIO_000300: 8.52e0

GenotypeQuality
all individuals: 1054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33107
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3704
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GenotypeQuality
all individuals: 627
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.273785277858598e-5
allele num: 13748
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

FS
type: SiteQuality
SIO_000300: 6.767e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.419666e6

GenotypeQuality
all individuals: 604
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.666111296234588e-5
allele num: 60020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 2.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 1.500179e6

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeQuality
all individuals: 293
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 44263
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variant carriers: 0

GenotypeQuality
all individuals: 211
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GenotypeQuality
all individuals: 3736
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4572
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variant carriers: 0

GenotypeQuality
all individuals: 341
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GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.35e0

DP
type: SiteQuality
SIO_000300: 1.575668e6

FS
type: SiteQuality
SIO_000300: 4.215e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 2.683e1

GenotypeQuality
all individuals: 503
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variant carriers: 0

GenotypeQuality
all individuals: 3738
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47416
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variant carriers: 0

GenotypeQuality
all individuals: 335
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GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532269760696157e-5
allele num: 66192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.347e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.615904e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.152e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
all individuals: 1187
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 37
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008966720828068e-5
allele num: 66468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.958e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

DP
type: SiteQuality
SIO_000300: 1.62236e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.34e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.62236e6

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 48032
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 1.998e0

VQSLOD
type: SiteQuality
SIO_000300: -1.17e0

DP
type: SiteQuality
SIO_000300: 1.624445e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
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GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
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South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 8
allele frequency: 1.200012000120001e-4
allele num: 66666
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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FS
type: SiteQuality
SIO_000300: 5.06e-1

ClippingRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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DP
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SIO_000300: 1.626409e6

BaseQRankSum
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VQSLOD
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SIO_000300: 3.3e-2

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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MQ
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QD
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 2.999760019198464e-5
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European (Finnish)
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QD
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DP
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.649917504124794e-4
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European (Finnish)
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South Asian
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Latino
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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MQRankSum
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MQ
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.066488716330988e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 9.699321047526673e-5
allele num: 10310
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.527463799107961e-5
allele num: 65468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.031e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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African
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.535390756947643e-5
allele num: 65130
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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SIO_000300: -6.56e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8468
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64792
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MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
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QD
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FS
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 5.334186803221849e-5
allele num: 37494
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Other
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European (Finnish)
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South Asian
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allele frequency: 2.894635275955229e-4
allele num: 10364
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African
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allele frequency: 1.591207349081365e-2
allele num: 6096
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
type: Population
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Other
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Latino
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African
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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MQRankSum
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DP
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
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Latino
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African
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allele frequency: 9.609840476648087e-5
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.801042e6

FS
type: SiteQuality
SIO_000300: 3.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.355e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.248e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 4.800323e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.132e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.83e-1

DP
type: SiteQuality
SIO_000300: 4.800062e6

QD
type: SiteQuality
SIO_000300: 6.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.42e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 4.799279e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

MQ
type: SiteQuality
SIO_000300: 5.788e1

FS
type: SiteQuality
SIO_000300: 9.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.457e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

DP
type: SiteQuality
SIO_000300: 4.798978e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.457e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.788e1

FS
type: SiteQuality
SIO_000300: 9.429e0

DP
type: SiteQuality
SIO_000300: 4.798978e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39482
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.557632398753894e-4
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.79293e5

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.532799756851223e-5
allele num: 39482
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10838
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.553277415346381e-4
allele num: 6438
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 594
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39502
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

South Asian
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allele frequency: 6.067224851352991e-5
allele num: 16482
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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Other
type: Population
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allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.758e0

InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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