3-129302384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302384
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302384
    reference: chr 3
allele count: 1
allele frequency: 9.934235361904194e-6
allele num: 100662
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2241+26G>A
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2241+26G>A
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 239
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9446
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-129302385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302385
    reference: chr 3
allele count: 1
allele frequency: 9.722519299200808e-6
allele num: 102854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2241+25C>T
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2241+25C>T
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5460
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-129302389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302389
    reference: chr 3
allele count: 6
allele frequency: 5.687203791469194e-5
allele num: 105500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2241+21C>T
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2241+21C>T
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 1.398601398601399e-4
  allele num: 14300
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

3-129302411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302411
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302411
    reference: chr 3
allele count: 4
allele frequency: 3.460626719498901e-5
allele num: 115586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2240C>T
  hgvsp: ENSP00000376931.1:p.Thr747Met
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2240C>T
  hgvsp: ENSP00000317128.4:p.Thr747Met
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 189
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  variant carriers: 0
hgvs: p.Thr747Met
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

3-129302413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302413
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302413
    reference: chr 3
allele count: 2
allele frequency: 1.723929870532867e-5
allele num: 116014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2238C>T
  hgvsp: ENST00000393239.1:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2238C>T
  hgvsp: ENST00000324093.4:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro746Pro
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8468
  num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-129302422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302422
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 117208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2229A>G
  hgvsp: ENST00000393239.1:c.2229A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2229A>G
  hgvsp: ENST00000324093.4:c.2229A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser743Ser
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9886
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-129302423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302423
    reference: chr 3
allele count: 1
allele frequency: 8.521371599972732e-6
allele num: 117352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2228C>T
  hgvsp: ENSP00000317128.4:p.Ser743Leu
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2228C>T
  hgvsp: ENSP00000376931.1:p.Ser743Leu
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 46623
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1141
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser743Leu
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 8.844861135680169e-5
  allele num: 11306
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-129302427-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302427
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302427
    reference: chr 3
allele count: 1
allele frequency: 8.494733265375467e-6
allele num: 117720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2224G>T
  hgvsp: ENSP00000376931.1:p.Ala742Ser
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2224G>T
  hgvsp: ENSP00000317128.4:p.Ala742Ser
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40617
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
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genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 295
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genotype quality: GenotypeQuality
  all individuals: 46650
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4567
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1156
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2088
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala742Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6218
  num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-129302431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302431
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302431
    reference: chr 3
allele count: 4
allele frequency: 3.387304383171872e-5
allele num: 118088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2220C>T
  hgvsp: ENST00000393239.1:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2220C>T
  hgvsp: ENST00000324093.4:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4613
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Cys740Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 9.984025559105431e-5
  allele num: 10016
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-129302435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302435
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302435
    reference: chr 3
allele count: 3
allele frequency: 2.535239833688267e-5
allele num: 118332
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2216G>A
  hgvsp: ENSP00000317128.4:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2216G>A
  hgvsp: ENSP00000376931.1:p.Arg739Gln
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1466
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1099
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 280
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genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 348
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 657
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genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg739Gln
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16036
  num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

3-129302436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302436
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302436
    reference: chr 3
allele count: 3
allele frequency: 2.534169045969827e-5
allele num: 118382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2215C>T
  hgvsp: ENSP00000317128.4:p.Arg739Trp
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2215C>T
  hgvsp: ENSP00000376931.1:p.Arg739Trp
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 448
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 298
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genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47200
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg739Trp
num of homozygotes: 1
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6262
  num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-129302440-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302438
    reference: chr 3
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2209_2210delCA
  hgvsp: ENSP00000376931.1:p.Gln737ValfsTer52
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2209_2210delCA
  hgvsp: ENSP00000317128.4:p.Gln737ValfsTer52
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40527
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
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genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1108
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 654
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln737ValfsTer52
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65232
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: CTG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-129302444-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302444
    reference: chr 3
allele count: 7
allele frequency: 5.909666525960321e-5
allele num: 118450
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2207A>G
  hgvsp: ENSP00000317128.4:p.Asn736Ser
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2207A>G
  hgvsp: ENSP00000376931.1:p.Asn736Ser
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12480
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn736Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 7.666360012266176e-5
  allele num: 65220
  num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-129302453-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302450
    reference: chr 3
allele count: 1
allele frequency: 8.448514751106756e-6
allele num: 118364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2195_2197delCCT
  hgvsp: ENSP00000376931.1:p.Ser732del
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2195_2197delCCT
  hgvsp: ENSP00000317128.4:p.Ser732del
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40000
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser732del
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10072
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CAGG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-129302455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302455
    reference: chr 3
allele count: 6280
allele frequency: 5.298415537519194e-2
allele num: 118526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2196C>T
  hgvsp: ENST00000324093.4:c.2196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2196C>T
  hgvsp: ENST00000393239.1:c.2196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.25e1
  variant carriers: 682
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 9.75e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 36532
  bin: 2.25e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.75e1
  variant carriers: 572
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 404
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43388
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 7323
  bin: 9.75e1
  variant carriers: 5895
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.75e1
  variant carriers: 21
hgvs: p.Ser732Ser
num of homozygotes: 256
population: Latino
  type: Population
  allele count: 295
  allele frequency: 2.589991220368745e-2
  allele num: 11390
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-129302470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302470
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302470
    reference: chr 3
allele count: 2
allele frequency: 1.700680272108843e-5
allele num: 117600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2181C>T
  hgvsp: ENST00000393239.1:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2181C>T
  hgvsp: ENST00000324093.4:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46374
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys727Cys
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9936
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

3-129302472-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302472
    reference: chr 3
allele count: 1
allele frequency: 8.516871923280018e-6
allele num: 117414
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2179T>A
  hgvsp: ENSP00000317128.4:p.Cys727Ser
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2179T>A
  hgvsp: ENSP00000376931.1:p.Cys727Ser
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys727Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8546
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-129302476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302476
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302476
    reference: chr 3
allele count: 1
allele frequency: 8.551686392556613e-6
allele num: 116936
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2175C>T
  hgvsp: ENST00000324093.4:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000423832
  ensembl transcript: ENST00000505665
  gene symbol: PLXND1
  hgvsc: ENST00000505665.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2175C>T
  hgvsp: ENST00000393239.1:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe725Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS

3-129302489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302489
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302489
    reference: chr 3
allele count: 173
allele frequency: 1.512369962409302e-3
allele num: 114390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000423832
  ensembl transcript: ENST00000505665
  gene symbol: PLXND1
  hgvsc: ENST00000505665.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2162A>G
  hgvsp: ENSP00000376931.1:p.Gln721Arg
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2162A>G
  hgvsp: ENSP00000317128.4:p.Gln721Arg
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13824
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33094
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln721Arg
num of homozygotes: 1
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

3-129302490-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302490
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302490
    reference: chr 3
allele count: 1
allele frequency: 8.789354334030623e-6
allele num: 113774
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2161C>A
  hgvsp: ENSP00000317128.4:p.Gln721Lys
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2161C>A
  hgvsp: ENSP00000376931.1:p.Gln721Lys
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000423832
  ensembl transcript: ENST00000505665
  gene symbol: PLXND1
  hgvsc: ENST00000505665.1:c.*123C>A
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 495
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genotype quality: GenotypeQuality
  all individuals: 41679
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln721Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

3-129302494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129302494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129302494
    reference: chr 3
allele count: 4
allele frequency: 3.570854684068632e-5
allele num: 112018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000423832
  ensembl transcript: ENST00000505665
  gene symbol: PLXND1
  hgvsc: ENST00000505665.1:c.*119G>A
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000376931
  ensembl transcript: ENST00000393239
  gene symbol: PLXND1
  hgvsc: ENST00000393239.1:c.2157G>A
  hgvsp: ENST00000393239.1:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000004399
  ensembl protein: ENSP00000317128
  ensembl transcript: ENST00000324093
  gene symbol: PLXND1
  hgvsc: ENST00000324093.4:c.2157G>A
  hgvsp: ENST00000324093.4:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9107
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13497
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 388
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser719Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

1-67108538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108538
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108538
    reference: chr 1
allele count: 3
allele frequency: 2.522195318805488e-5
allele num: 118944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.286G>A
  hgvsp: ENSP00000237247.6:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.405G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.274G>A
  hgvsp: ENSP00000410439.1:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.202G>A
  hgvsp: ENSP00000360078.1:p.Glu68Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.145G>A
  hgvsp: ENSP00000360074.3:p.Glu49Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.274G>A
  hgvsp: ENSP00000360076.3:p.Glu92Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.199G>A
  hgvsp: ENSP00000360075.3:p.Glu67Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.263G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9643
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu92Lys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

1-67108538-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108538
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108538
    reference: chr 1
allele count: 1
allele frequency: 8.407317729351627e-6
allele num: 118944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.202G>C
  hgvsp: ENSP00000360078.1:p.Glu68Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.405G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.145G>C
  hgvsp: ENSP00000360074.3:p.Glu49Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.274G>C
  hgvsp: ENSP00000410439.1:p.Glu92Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.286G>C
  hgvsp: ENSP00000237247.6:p.Glu96Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.199G>C
  hgvsp: ENSP00000360075.3:p.Glu67Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.263G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.274G>C
  hgvsp: ENSP00000360076.3:p.Glu92Gln
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu92Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-67108543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108543
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108543
    reference: chr 1
allele count: 136
allele frequency: 1.163108921729611e-3
allele num: 116928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.268C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.207C>T
  hgvsp: ENST00000371039.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.150C>T
  hgvsp: ENST00000371035.3:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.279C>T
  hgvsp: ENST00000371037.4:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.204C>T
  hgvsp: ENST00000371036.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.279C>T
  hgvsp: ENST00000424320.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.291C>T
  hgvsp: ENST00000237247.6:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.410C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11838
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 22530
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35534
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro93Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-67108544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108544
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108544
    reference: chr 1
allele count: 5
allele frequency: 4.277745457034325e-5
allele num: 116884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.151G>A
  hgvsp: ENSP00000360074.3:p.Gly51Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.208G>A
  hgvsp: ENSP00000360078.1:p.Gly70Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.280G>A
  hgvsp: ENSP00000360076.3:p.Gly94Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.205G>A
  hgvsp: ENSP00000360075.3:p.Gly69Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.269G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.280G>A
  hgvsp: ENSP00000410439.1:p.Gly94Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.292G>A
  hgvsp: ENSP00000237247.6:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.411G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly94Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

1-67108561-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108561
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108560
    reference: chr 1
allele count: 74
allele frequency: 7.173462067895849e-4
allele num: 103158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+21delT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+21delT
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: AT
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-67108563-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108563
    reference: chr 1
allele count: 74
allele frequency: 7.172766749379653e-4
allele num: 103168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+16T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+16T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15928
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

1-67108566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108566
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108566
    reference: chr 1
allele count: 48
allele frequency: 4.796067224875602e-4
allele num: 100082
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+19T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12457
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4759
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-67108581-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108581
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108581
    reference: chr 1
allele count: 2
allele frequency: 2.169056243628397e-5
allele num: 92206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+34A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

1-67108583-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108583
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108583
    reference: chr 1
allele count: 1
allele frequency: 1.085210747927247e-5
allele num: 92148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+36T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+36T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10409
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-67108586-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108586
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108586
    reference: chr 1
allele count: 1
allele frequency: 1.109705484164503e-5
allele num: 90114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+39C>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+39C>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6644
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-67108588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108588
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108588
    reference: chr 1
allele count: 1
allele frequency: 1.120322652924042e-5
allele num: 89260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+41C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+41C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-67108589-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108589
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108589
    reference: chr 1
allele count: 1
allele frequency: 1.125011250112501e-5
allele num: 88888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+42T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+42T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

1-67108596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67108596
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67108596
    reference: chr 1
allele count: 2
allele frequency: 2.344006375697342e-5
allele num: 85324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.154+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.283+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.272+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.414+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.283+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.295+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.211+49A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.208+49A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17420
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

1-67109178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109178
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109178
    reference: chr 1
allele count: 6
allele frequency: 5.137338173847524e-5
allele num: 116792
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-49G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-49G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11344
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8314
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-67109187-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109187
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109187
    reference: chr 1
allele count: 2
allele frequency: 1.706921566953999e-5
allele num: 117170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-40C>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-40C>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8362
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-67109189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109189
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109189
    reference: chr 1
allele count: 3
allele frequency: 2.556150097133704e-5
allele num: 117364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-38G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-38G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8389
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-67109193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109193
    reference: chr 1
allele count: 260
allele frequency: 2.209306277828762e-3
allele num: 117684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-34A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-34A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22926
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 4.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8599
  bin: 9.75e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 4
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS

1-67109199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109199
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109199
    reference: chr 1
allele count: 1
allele frequency: 8.461811843151855e-6
allele num: 118178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-28G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-28G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-67109217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109217
    reference: chr 1
allele count: 1
allele frequency: 8.347106058329577e-6
allele num: 119802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.155-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.209-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.284-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.284-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.296-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.212-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.273-10T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.415-10T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8617
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-67109246-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109246
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109246
    reference: chr 1
allele count: 2
allele frequency: 1.658044833532299e-5
allele num: 120624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.231T>G
  hgvsp: ENSP00000360078.1:p.Phe77Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.228T>G
  hgvsp: ENSP00000360075.3:p.Phe76Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.303T>G
  hgvsp: ENSP00000410439.1:p.Phe101Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.303T>G
  hgvsp: ENSP00000360076.3:p.Phe101Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.174T>G
  hgvsp: ENSP00000360074.3:p.Phe58Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.434T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.315T>G
  hgvsp: ENSP00000237247.6:p.Phe105Leu
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.292T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4814
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe101Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-67109264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109264
    reference: chr 1
allele count: 7
allele frequency: 5.796333405097461e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.321G>A
  hgvsp: ENST00000424320.1:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.249G>A
  hgvsp: ENST00000371039.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.321G>A
  hgvsp: ENST00000371037.4:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.310G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.452G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.192G>A
  hgvsp: ENST00000371035.3:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.246G>A
  hgvsp: ENST00000371036.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.333G>A
  hgvsp: ENST00000237247.6:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser107Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

1-67109264-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109261
    reference: chr 1
allele count: 16
allele frequency: 1.32487620687942e-4
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.334_336delGAA
  hgvsp: ENSP00000410439.1:p.Glu112del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.262_264delGAA
  hgvsp: ENSP00000360078.1:p.Glu88del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.346_348delGAA
  hgvsp: ENSP00000237247.6:p.Glu116del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.323_325delGAA
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.205_207delGAA
  hgvsp: ENSP00000360074.3:p.Glu69del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.259_261delGAA
  hgvsp: ENSP00000360075.3:p.Glu87del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.334_336delGAA
  hgvsp: ENSP00000360076.3:p.Glu112del
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.465_467delGAA
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu112del
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: GGAA
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-67109267-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109267
    reference: chr 1
allele count: 2
allele frequency: 1.656204971927326e-5
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.324A>G
  hgvsp: ENST00000371037.4:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.249A>G
  hgvsp: ENST00000371036.3:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.336A>G
  hgvsp: ENST00000237247.6:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.455A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.252A>G
  hgvsp: ENST00000371039.1:c.252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.195A>G
  hgvsp: ENST00000371035.3:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.324A>G
  hgvsp: ENST00000424320.1:c.324A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.313A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu108Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-67109277-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109277
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109277
    reference: chr 1
allele count: 5237
allele frequency: 4.330532861442794e-2
allele num: 120932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.334G>C
  hgvsp: ENSP00000410439.1:p.Glu112Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.262G>C
  hgvsp: ENSP00000360078.1:p.Glu88Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.465G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.334G>C
  hgvsp: ENSP00000360076.3:p.Glu112Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.259G>C
  hgvsp: ENSP00000360075.3:p.Glu87Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.323G>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.205G>C
  hgvsp: ENSP00000360074.3:p.Glu69Gln
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.346G>C
  hgvsp: ENSP00000237247.6:p.Glu116Gln
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 3.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.25e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 4.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 416
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 435
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13763
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 8.25e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 9.75e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 340
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu112Gln
num of homozygotes: 164
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-67109295-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109295
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109295
    reference: chr 1
allele count: 2
allele frequency: 1.65218253312626e-5
allele num: 121052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.277A>G
  hgvsp: ENSP00000360075.3:p.Asn93Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.341A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.483A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.280A>G
  hgvsp: ENSP00000360078.1:p.Asn94Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.352A>G
  hgvsp: ENSP00000410439.1:p.Asn118Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.352A>G
  hgvsp: ENSP00000360076.3:p.Asn118Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.364A>G
  hgvsp: ENSP00000237247.6:p.Asn122Asp
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.223A>G
  hgvsp: ENSP00000360074.3:p.Asn75Asp
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn118Asp
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

1-67109306-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109306
    reference: chr 1
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.363T>G
  hgvsp: ENSP00000410439.1:p.Ile121Met
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.291T>G
  hgvsp: ENSP00000360078.1:p.Ile97Met
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.288T>G
  hgvsp: ENSP00000360075.3:p.Ile96Met
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.363T>G
  hgvsp: ENSP00000360076.3:p.Ile121Met
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.375T>G
  hgvsp: ENSP00000237247.6:p.Ile125Met
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.352T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.494T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.234T>G
  hgvsp: ENSP00000360074.3:p.Ile78Met
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile121Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-67109313-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109313
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.295T>C
  hgvsp: ENST00000371036.3:c.295T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.298T>C
  hgvsp: ENST00000371039.1:c.298T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.241T>C
  hgvsp: ENST00000371035.3:c.241T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.370T>C
  hgvsp: ENST00000424320.1:c.370T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.501T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.382T>C
  hgvsp: ENST00000237247.6:c.382T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.370T>C
  hgvsp: ENST00000371037.4:c.370T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.359T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu124Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

1-67109315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109315
    reference: chr 1
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.372G>A
  hgvsp: ENST00000371037.4:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.372G>A
  hgvsp: ENST00000424320.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.297G>A
  hgvsp: ENST00000371036.3:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.384G>A
  hgvsp: ENST00000237247.6:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.300G>A
  hgvsp: ENST00000371039.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.243G>A
  hgvsp: ENST00000371035.3:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.361G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.503G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu124Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-67109332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109332
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109332
    reference: chr 1
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.389T>C
  hgvsp: ENSP00000410439.1:p.Leu130Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.401T>C
  hgvsp: ENSP00000237247.6:p.Leu134Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.314T>C
  hgvsp: ENSP00000360075.3:p.Leu105Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.389T>C
  hgvsp: ENSP00000360076.3:p.Leu130Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.378T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.520T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.317T>C
  hgvsp: ENSP00000360078.1:p.Leu106Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.260T>C
  hgvsp: ENSP00000360074.3:p.Leu87Pro
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25412
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12462
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu130Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-67109335-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109335
    reference: chr 1
allele count: 26005
allele frequency: 2.145025322929211e-1
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.523A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.392A>G
  hgvsp: ENSP00000410439.1:p.Lys131Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.317A>G
  hgvsp: ENSP00000360075.3:p.Lys106Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.392A>G
  hgvsp: ENSP00000360076.3:p.Lys131Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.320A>G
  hgvsp: ENSP00000360078.1:p.Lys107Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.404A>G
  hgvsp: ENSP00000237247.6:p.Lys135Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.263A>G
  hgvsp: ENSP00000360074.3:p.Lys88Arg
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.381A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 3.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 15058
  bin: 2.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 9.75e1
  variant carriers: 18366
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 8.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.25e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 8.75e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 7.25e1
  variant carriers: 4
hgvs: p.Lys131Arg
num of homozygotes: 3284
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-67109336-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109336
    reference: chr 1
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.264G>T
  hgvsp: ENSP00000360074.3:p.Lys88Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.393G>T
  hgvsp: ENSP00000410439.1:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.405G>T
  hgvsp: ENSP00000237247.6:p.Lys135Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.524G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.321G>T
  hgvsp: ENSP00000360078.1:p.Lys107Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.393G>T
  hgvsp: ENSP00000360076.3:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.318G>T
  hgvsp: ENSP00000360075.3:p.Lys106Asn
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.382G>T
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27063
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys131Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

1-67109339-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109339
    reference: chr 1
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.385T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.267T>G
  hgvsp: ENSP00000360074.3:p.Asn89Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.408T>G
  hgvsp: ENSP00000237247.6:p.Asn136Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.324T>G
  hgvsp: ENSP00000360078.1:p.Asn108Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.321T>G
  hgvsp: ENSP00000360075.3:p.Asn107Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.396T>G
  hgvsp: ENSP00000360076.3:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.396T>G
  hgvsp: ENSP00000410439.1:p.Asn132Lys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.527T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn132Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-67109340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109340
    reference: chr 1
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.397G>A
  hgvsp: ENSP00000410439.1:p.Ala133Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.386G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.325G>A
  hgvsp: ENSP00000360078.1:p.Ala109Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.268G>A
  hgvsp: ENSP00000360074.3:p.Ala90Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.409G>A
  hgvsp: ENSP00000237247.6:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.397G>A
  hgvsp: ENSP00000360076.3:p.Ala133Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.322G>A
  hgvsp: ENSP00000360075.3:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.528G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala133Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-67109363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109363
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109363
    reference: chr 1
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.345G>A
  hgvsp: ENST00000371036.3:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.420G>A
  hgvsp: ENST00000424320.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.432G>A
  hgvsp: ENST00000237247.6:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.291G>A
  hgvsp: ENST00000371035.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.409G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.551G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.420G>A
  hgvsp: ENST00000371037.4:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.348G>A
  hgvsp: ENST00000371039.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27060
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys140Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

1-67109373-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109373
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109373
    reference: chr 1
allele count: 3
allele frequency: 2.487603442843165e-5
allele num: 120598
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.430G>T
  hgvsp: ENSP00000360076.3:p.Gly144Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.561G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.355G>T
  hgvsp: ENSP00000360075.3:p.Gly119Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.430G>T
  hgvsp: ENSP00000410439.1:p.Gly144Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.301G>T
  hgvsp: ENSP00000360074.3:p.Gly101Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.358G>T
  hgvsp: ENSP00000360078.1:p.Gly120Cys
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.419G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.442G>T
  hgvsp: ENSP00000237247.6:p.Gly148Cys
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly144Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-67109382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109382
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109382
    reference: chr 1
allele count: 2
allele frequency: 1.66441970007157e-5
allele num: 120162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.439G>A
  hgvsp: ENSP00000410439.1:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.367G>A
  hgvsp: ENSP00000360078.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.570G>A
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.451G>A
  hgvsp: ENSP00000237247.6:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.439G>A
  hgvsp: ENSP00000360076.3:p.Ala147Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.310G>A
  hgvsp: ENSP00000360074.3:p.Ala104Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.364G>A
  hgvsp: ENSP00000360075.3:p.Ala122Thr
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.428G>A
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27061
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala147Thr
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-67109386-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109386
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109386
    reference: chr 1
allele count: 1
allele frequency: 8.334722453742291e-6
allele num: 119980
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.443T>C
  hgvsp: ENSP00000360076.3:p.Leu148Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.368T>C
  hgvsp: ENSP00000360075.3:p.Leu123Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.432T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.443T>C
  hgvsp: ENSP00000410439.1:p.Leu148Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.371T>C
  hgvsp: ENSP00000360078.1:p.Leu124Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.455T>C
  hgvsp: ENSP00000237247.6:p.Leu152Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.314T>C
  hgvsp: ENSP00000360074.3:p.Leu105Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.574T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13426
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu148Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-67109391-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109391
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109391
    reference: chr 1
allele count: 5
allele frequency: 4.176900071842681e-5
allele num: 119706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.437C>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.448C>G
  hgvsp: ENSP00000360076.3:p.Pro150Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.376C>G
  hgvsp: ENSP00000360078.1:p.Pro126Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.460C>G
  hgvsp: ENSP00000237247.6:p.Pro154Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.448C>G
  hgvsp: ENSP00000410439.1:p.Pro150Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.373C>G
  hgvsp: ENSP00000360075.3:p.Pro125Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.319C>G
  hgvsp: ENSP00000360074.3:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.579C>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13429
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro150Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

1-67109394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109394
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109394
    reference: chr 1
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.379T>C
  hgvsp: ENSP00000360078.1:p.Ser127Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.440T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.322T>C
  hgvsp: ENSP00000360074.3:p.Ser108Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.463T>C
  hgvsp: ENSP00000237247.6:p.Ser155Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.582T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.451T>C
  hgvsp: ENSP00000410439.1:p.Ser151Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.451T>C
  hgvsp: ENSP00000360076.3:p.Ser151Pro
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.376T>C
  hgvsp: ENSP00000360075.3:p.Ser126Pro
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser151Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-67109399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109399
    reference: chr 1
allele count: 1
allele frequency: 8.401243384020834e-6
allele num: 119030
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.456A>G
  hgvsp: ENST00000371037.4:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.456A>G
  hgvsp: ENST00000424320.1:c.456A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.445A>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.468A>G
  hgvsp: ENST00000237247.6:c.468A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.327A>G
  hgvsp: ENST00000371035.3:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.381A>G
  hgvsp: ENST00000371036.3:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.384A>G
  hgvsp: ENST00000371039.1:c.384A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.587A>G
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27061
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro152Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-67109408-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109408
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109409
    reference: chr 1
allele count: 1
allele frequency: 8.515711487694797e-6
allele num: 117430
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.455dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+7dupG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+7dupG
  variant of: http://identifiers.org/hgnc/25412
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
hgvs: c.459+7dupG
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-67109410-T-TGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109413
    reference: chr 1
allele count: 1
allele frequency: 8.640353908896108e-6
allele num: 115736
alternate allele: TGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+8_387+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+8_590+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+8_471+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.456_457insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+8_459+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+8_384+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+8_330+9insGTG
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+8_459+9insGTG
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-67109410-T-TTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109412
    reference: chr 1
allele count: 174
allele frequency: 1.503421580147923e-3
allele num: 115736
alternate allele: TTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.470_471dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+22_384+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+22_387+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+22_471+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+22_459+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+22_459+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+22_330+23dupGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+22_590+23dupGT
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 36599
  bin: 9.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 9.25e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-67109410-T-TTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109414
    reference: chr 1
allele count: 15441
allele frequency: 1.334157047072648e-1
allele num: 115736
alternate allele: TTGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+20_384+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.468_471dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+20_387+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+20_330+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+20_471+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+20_459+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+20_590+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+20_459+23dupGTGT
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 357
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 10161
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 9.25e1
  variant carriers: 41
num of homozygotes: 865
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-67109410-T-TTGTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109416
    reference: chr 1
allele count: 8
allele frequency: 6.912283127116886e-5
allele num: 115736
alternate allele: TTGTGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+18_471+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.466_471dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+18_459+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+18_330+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+18_384+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+18_387+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+18_459+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+18_590+23dupGTGTGT
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36599
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-67109410-T-TTGTGTGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109418
    reference: chr 1
allele count: 1
allele frequency: 8.640353908896108e-6
allele num: 115736
alternate allele: TTGTGTGTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.464_471dupGTGTGTGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-67109410-TTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109408
    reference: chr 1
allele count: 126
allele frequency: 1.08868459252091e-3
allele num: 115736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+22_384+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+22_459+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.470_471delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+22_459+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+22_590+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+22_330+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+22_471+23delGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+22_387+23delGT
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: TTG
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

1-67109415-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109415
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109415
    reference: chr 1
allele count: 20
allele frequency: 1.705553281484514e-4
allele num: 117264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.461T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+13T>G
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+13T>G
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17644
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 2
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

1-67109418-G-GTGTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109422
    reference: chr 1
allele count: 3
allele frequency: 2.561212990472288e-5
allele num: 117132
alternate allele: GTGTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+19_387+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+19_459+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+19_459+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+19_471+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+19_384+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+19_590+20insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.467_468insATGT
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+19_330+20insATGT
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17633
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-67109419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109419
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109419
    reference: chr 1
allele count: 1
allele frequency: 8.540730744922536e-6
allele num: 117086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.465T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+17T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+17T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34243
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-67109421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109421
    reference: chr 1
allele count: 3
allele frequency: 2.56576921761144e-5
allele num: 116924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000237247
  ensembl transcript: ENST00000237247
  gene symbol: SGIP1
  hgvsc: ENST00000237247.6:c.471+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360074
  ensembl transcript: ENST00000371035
  gene symbol: SGIP1
  hgvsc: ENST00000371035.3:c.330+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000468286
  gene symbol: SGIP1
  hgvsc: ENST00000468286.1:n.590+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.467T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000410439
  ensembl transcript: ENST00000424320
  gene symbol: SGIP1
  hgvsc: ENST00000424320.1:c.459+19T>C
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+19T>C
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17632
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-67109424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67109424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 67109424
    reference: chr 1
allele count: 1
allele frequency: 8.587081594449311e-6
allele num: 116454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360075
  ensembl transcript: ENST00000371036
  gene symbol: SGIP1
  hgvsc: ENST00000371036.3:c.384+22G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360076
  ensembl transcript: ENST00000371037
  gene symbol: SGIP1
  hgvsc: ENST00000371037.4:c.459+22G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118473
  ensembl protein: ENSP00000360078
  ensembl transcript: ENST00000371039
  gene symbol: SGIP1
  hgvsc: ENST00000371039.1:c.387+22G>T
  variant of: http://identifiers.org/hgnc/25412
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118473
  ensembl transcript: ENST00000483060
  gene symbol: SGIP1
  hgvsc: ENST00000483060.1:n.470G>T
  variant of: http://identifiers.org/hgnc/25412
canonical: false
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: G

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.283321194464675e-5
allele num: 13730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 1.20259e6

FS
type: SiteQuality
SIO_000300: 3.584e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.433e0

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.138777841233581e-5
allele num: 14008
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 1.235503e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.47e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 766
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East Asian
type: Population
allele count: 4
allele frequency: 5.28680941052075e-4
allele num: 7566
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58482
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.082e0

DP
type: SiteQuality
SIO_000300: 1.267375e6

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 2.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

Latino
type: Population
allele count: 1
allele frequency: 8.954154727793696e-5
allele num: 11168
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031778786628147e-4
allele num: 9692
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.133126546981233e-5
allele num: 63834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15544
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 6.444e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

QD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 1.397296e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15596
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.122853038536007e-5
allele num: 64044
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 856
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.526e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 4.013e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.284e1

DP
type: SiteQuality
SIO_000300: 1.402237e6

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64628
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6174
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Other
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allele num: 868
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.476e0

DP
type: SiteQuality
SIO_000300: 1.418841e6

FS
type: SiteQuality
SIO_000300: 6.561e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64702
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South Asian
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allele num: 15854
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
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African
type: Population
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allele num: 9912
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VQSLOD
type: SiteQuality
SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 6.193e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

DP
type: SiteQuality
SIO_000300: 1.420981e6

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15918
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Latino
type: Population
allele count: 0
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allele num: 11340
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East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64864
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
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QD
type: SiteQuality
SIO_000300: 1.857e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 9.864000000000001e0

DP
type: SiteQuality
SIO_000300: 1.426837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.314e0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.075219878221293e-5
allele num: 65036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
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South Asian
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allele frequency: 6.253908692933083e-5
allele num: 15990
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.182e1

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.433344e6

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
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African
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allele count: 2
allele frequency: 1.990842126219391e-4
allele num: 10046
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65164
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

FS
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 2.061e1

DP
type: SiteQuality
SIO_000300: 1.437622e6

East Asian
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allele num: 8580
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Other
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African
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allele frequency: 0.0e0
allele num: 10050
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Latino
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allele frequency: 0.0e0
allele num: 11376
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.602638846271863e-5
allele num: 65180
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South Asian
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allele frequency: 0.0e0
allele num: 16056
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.73e-2

FS
type: SiteQuality
SIO_000300: 2.413e0

VQSLOD
type: SiteQuality
SIO_000300: -4.405e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.121e0

QD
type: SiteQuality
SIO_000300: 2.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.064e0

Other
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Latino
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East Asian
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allele frequency: 1.165229550221394e-4
allele num: 8582
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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MQRankSum
type: SiteQuality
SIO_000300: -1.63e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
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FS
type: SiteQuality
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QD
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.897e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

East Asian
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allele num: 8580
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African
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South Asian
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allele count: 0
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European (Finnish)
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allele count: 2
allele frequency: 3.206155819172812e-4
allele num: 6238
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

East Asian
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allele num: 8582
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.215040397762585e-5
allele num: 16090
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Latino
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allele frequency: 0.0e0
allele num: 11382
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 4.775e0

DP
type: SiteQuality
SIO_000300: 1.439472e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

Other
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allele frequency: 7.077625570776255e-2
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East Asian
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allele count: 1091
allele frequency: 1.272748483434438e-1
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European (Finnish)
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allele frequency: 3.749597682652076e-2
allele num: 6214
num of homozygotes: 7

European (Non-Finnish)
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allele count: 2469
allele frequency: 3.78495217071376e-2
allele num: 65232
num of homozygotes: 67

African
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allele count: 804
allele frequency: 7.957244655581948e-2
allele num: 10104
num of homozygotes: 36

South Asian
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allele count: 1326
allele frequency: 8.216631552856611e-2
allele num: 16138
num of homozygotes: 78

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.103e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

DP
type: SiteQuality
SIO_000300: 1.590056e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.086800839609829e-5
allele num: 64792
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11342
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European (Finnish)
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South Asian
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Other
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.826e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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African
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Latino
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.755e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551782998665467e-5
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South Asian
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East Asian
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Other
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.183e-1

DP
type: SiteQuality
SIO_000300: 1.43002e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

QD
type: SiteQuality
SIO_000300: 9.6e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 1778
bin: 9.75e1
variant carriers: 169

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

African
type: Population
allele count: 164
allele frequency: 1.700891931134619e-2
allele num: 9642
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585137748470342e-5
allele num: 63086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.180039490217197e-4
allele num: 11142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
SIO_000300: 2.087e0

DP
type: SiteQuality
SIO_000300: 1.393228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.026900162484202e-5
allele num: 11078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

DP
type: SiteQuality
SIO_000300: 1.380651e6

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.821e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

FS
type: SiteQuality
SIO_000300: 1.702e0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.309929263819754e-4
allele num: 15268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616396728413022e-5
allele num: 61866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

DP
type: SiteQuality
SIO_000300: 1.35579e6

GenotypeQuality
all individuals: 310
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.593336599706026e-5
allele num: 65312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.77316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.274e1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.755e0

FS
type: SiteQuality
SIO_000300: 1.357e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

GenotypeQuality
all individuals: 38288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2630
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531112199902009e-5
allele num: 65312
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.357e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.755e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.77316e6

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 4816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 136

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55802069051477e-5
allele num: 64184
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.021148036253776e-4
allele num: 9930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

Latino
type: Population
allele count: 131
allele frequency: 1.15561044460127e-2
allele num: 11336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

DP
type: SiteQuality
SIO_000300: 1.741416e6

QD
type: SiteQuality
SIO_000300: 1.338e1

GenotypeQuality
all individuals: 2118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4850
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GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.223091976516634e-4
allele num: 8176
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76522506619594e-4
allele num: 11330
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.014910336490026e-4
allele num: 9926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15944
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 1.737651e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.348e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 739
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
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GenotypeQuality
all individuals: 456
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GenotypeQuality
all individuals: 678
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GenotypeQuality
all individuals: 3148
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GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 75

GenotypeQuality
all individuals: 1196
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GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 1184
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GenotypeQuality
all individuals: 312
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GenotypeQuality
all individuals: 1111
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GenotypeQuality
all individuals: 20851
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 11
allele frequency: 1.044237706474274e-3
allele num: 10534
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.108463434675431e-4
allele num: 14604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 8.575103615835358e-4
allele num: 55976
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.64963503649635e-3
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.819366852886406e-4
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.525320317266626e-4
allele num: 6556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 1.404154e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 4617
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GenotypeQuality
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GenotypeQuality
all individuals: 339
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GenotypeQuality
all individuals: 15980
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 310
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GenotypeQuality
all individuals: 1177
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.820721769499418e-4
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 8.570510302467593e-4
allele num: 56006
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.640776699029126e-3
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.043247344461305e-3
allele num: 10544
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.110152075626798e-4
allele num: 14598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.40066e6

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

QD
type: SiteQuality
SIO_000300: 2.021e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 472
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GenotypeQuality
all individuals: 3981
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GenotypeQuality
all individuals: 1097
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GenotypeQuality
all individuals: 533
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GenotypeQuality
all individuals: 3554
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GenotypeQuality
all individuals: 491
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GenotypeQuality
all individuals: 2989
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variant carriers: 48

GenotypeQuality
all individuals: 308
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 5.653115227327399e-3
allele num: 8314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54118
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

FS
type: SiteQuality
SIO_000300: 7.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.296253e6

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.481700992739665e-4
allele num: 13498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

QD
type: SiteQuality
SIO_000300: 1.662e1

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 1.116741e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 5.079e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2012
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GenotypeQuality
all individuals: 202
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.412898443291327e-5
allele num: 13490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.559e0

DP
type: SiteQuality
SIO_000300: 1.109108e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.074602713580349e-5
allele num: 48202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.744e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 2.109e1

MQ
type: SiteQuality
SIO_000300: 5.803e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.449e0

DP
type: SiteQuality
SIO_000300: 1.09145e6

GenotypeQuality
all individuals: 2028
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2939
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variant carriers: 1

GenotypeQuality
all individuals: 446
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09881207236704e-5
allele num: 47646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.814e1

DP
type: SiteQuality
SIO_000300: 1.082031e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 2.175e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.241e0

FS
type: SiteQuality
SIO_000300: 5.001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.434e0

VQSLOD
type: SiteQuality
SIO_000300: -1.979e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5599
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.982553528945282e-4
allele num: 5044
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

DP
type: SiteQuality
SIO_000300: 1.077165e6

QD
type: SiteQuality
SIO_000300: 1.027e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.209261223047013e-5
allele num: 45264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.104972375690608e-4
allele num: 9050
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.058534e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.24200243438095e-5
allele num: 64082
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.187e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.62893e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.109936246306951e-5
allele num: 64310
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.675812e6

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.879e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4001
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variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.684804009307321e-4
allele num: 11174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.254e0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.767e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.687261e6

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6995
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1844
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.320400965286802e-4
allele num: 64644
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.828448892065761e-4
allele num: 11192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 232
allele frequency: 2.285714285714286e-2
allele num: 10150
num of homozygotes: 4

South Asian
type: Population
allele count: 2
allele frequency: 1.235788433020267e-4
allele num: 16184
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.717706e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8511
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539882968894364e-5
allele num: 64940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.265e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.189e0

MQRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.748421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4667
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516392199678525e-5
allele num: 65946
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.793257e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 7928
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 27375
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 8697
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variant carriers: 2

GenotypeQuality
all individuals: 3617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.743679163034002e-4
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.241e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

QD
type: SiteQuality
SIO_000300: 1.651e1

DP
type: SiteQuality
SIO_000300: 1.811205e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.591e0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
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variant carriers: 0

GenotypeQuality
all individuals: 8731
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 272
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 1669
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variant carriers: 0

GenotypeQuality
all individuals: 4826
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.025270758122743e-5
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.589e1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.818036e6

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.813e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 2139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 4826
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
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GenotypeQuality
all individuals: 8731
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 3630
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.062146892655367e-4
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.903600464576074e-4
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.351610095735422e-4
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008423586040914e-5
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

QD
type: SiteQuality
SIO_000300: 1.589e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.818036e6

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
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GenotypeQuality
all individuals: 2148
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 4833
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variant carriers: 0

GenotypeQuality
all individuals: 27185
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8736
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008242584682029e-5
allele num: 66484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.819167e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.07e1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3504
bin: 8.25e1
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GenotypeQuality
all individuals: 7353
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variant carriers: 3

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 32
bin: 2.75e1
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GenotypeQuality
all individuals: 12970
bin: 9.75e1
variant carriers: 5059

GenotypeQuality
all individuals: 25051
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4439
bin: 7.75e1
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GenotypeQuality
all individuals: 1997
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 49
allele frequency: 5.420353982300885e-2
allele num: 904
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 609
allele frequency: 9.249696233292831e-2
allele num: 6584
num of homozygotes: 22

Latino
type: Population
allele count: 168
allele frequency: 1.459346768589298e-2
allele num: 11512
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

African
type: Population
allele count: 95
allele frequency: 9.18762088974855e-3
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4143
allele frequency: 6.224272107208317e-2
allele num: 66562
num of homozygotes: 133

South Asian
type: Population
allele count: 173
allele frequency: 1.048357774815174e-2
allele num: 16502
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.361e0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

DP
type: SiteQuality
SIO_000300: 2.082699e6

QD
type: SiteQuality
SIO_000300: 1.575e1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
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GenotypeQuality
all individuals: 7420
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GenotypeQuality
all individuals: 2038
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 39
bin: 3.25e1
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GenotypeQuality
all individuals: 12456
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.705e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: -1.037e0

DP
type: SiteQuality
SIO_000300: 2.056366e6

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12456
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variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.14e-1

DP
type: SiteQuality
SIO_000300: 2.057382e6

QD
type: SiteQuality
SIO_000300: 1.864e1

FS
type: SiteQuality
SIO_000300: 9.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.889e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.55e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.165772907437631e-4
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.254e0

DP
type: SiteQuality
SIO_000300: 2.058193e6

QD
type: SiteQuality
SIO_000300: 1.446e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

MQ
type: SiteQuality
SIO_000300: 5.76e1

FS
type: SiteQuality
SIO_000300: 5.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.322e0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.625e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.907e0

DP
type: SiteQuality
SIO_000300: 2.058493e6

GenotypeQuality
all individuals: 3565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2036
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variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4526
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

DP
type: SiteQuality
SIO_000300: 2.059548e6

MQ
type: SiteQuality
SIO_000300: 5.782e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 2.141e0

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.25e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 22651

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 21
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variant carriers: 6

GenotypeQuality
all individuals: 921
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variant carriers: 7

GenotypeQuality
all individuals: 20
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variant carriers: 3

GenotypeQuality
all individuals: 2108
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variant carriers: 9

GenotypeQuality
all individuals: 16489
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4686
bin: 6.75e1
variant carriers: 2

Other
type: Population
allele count: 185
allele frequency: 2.037444933920705e-1
allele num: 908
num of homozygotes: 19

South Asian
type: Population
allele count: 3858
allele frequency: 2.342440801457195e-1
allele num: 16470
num of homozygotes: 477

Latino
type: Population
allele count: 3952
allele frequency: 3.419868466597439e-1
allele num: 11556
num of homozygotes: 725

European (Non-Finnish)
type: Population
allele count: 10642
allele frequency: 1.595789347408829e-1
allele num: 66688
num of homozygotes: 865

African
type: Population
allele count: 3933
allele frequency: 3.782458165031737e-1
allele num: 10398
num of homozygotes: 774

European (Finnish)
type: Population
allele count: 1037
allele frequency: 1.568835098335855e-1
allele num: 6610
num of homozygotes: 86

East Asian
type: Population
allele count: 2398
allele frequency: 2.787075778707578e-1
allele num: 8604
num of homozygotes: 338

QD
type: SiteQuality
SIO_000300: 1.859e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.73e-2

DP
type: SiteQuality
SIO_000300: 4.573917e6

GenotypeQuality
all individuals: 2882
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.378e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.28e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

DP
type: SiteQuality
SIO_000300: 3.613365e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 5.8e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.613019e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1000
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649e0

MQRankSum
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SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.61319e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.513e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 128
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17806
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GenotypeQuality
all individuals: 716
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

DP
type: SiteQuality
SIO_000300: 3.599898e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.0e-4

QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.508430765531544e-5
allele num: 66542
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

VQSLOD
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
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SIO_000300: -2.582e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.573834e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15504
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.567148e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.689e1

FS
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.248e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.538521846636312e-5
allele num: 66326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.485e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
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SIO_000300: -1.53e-1

BaseQRankSum
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SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.006e0

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.596306068601583e-5
allele num: 15160
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 6.744907594765952e-5
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Latino
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.231703789412785e-5
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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African
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 6
allele frequency: 9.074410163339383e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.560975609756098e-3
allele num: 10250
num of homozygotes: 0

South Asian
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allele count: 26
allele frequency: 2.040816326530612e-3
allele num: 12740
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.129845298105336e-3
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 105
allele frequency: 1.609688793499923e-3
allele num: 65230
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.19480215406228e-4
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.16822429906542e-3
allele num: 856
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 6.64e-1

DP
type: SiteQuality
SIO_000300: 4.462844e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.743e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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bin: 6.75e1
variant carriers: 27

GenotypeQuality
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bin: 1.75e1
variant carriers: 35

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 36

GenotypeQuality
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bin: 9.75e1
variant carriers: 14391

East Asian
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allele count: 1102
allele frequency: 1.290095996253805e-1
allele num: 8542
num of homozygotes: 62

Latino
type: Population
allele count: 866
allele frequency: 7.526507908917086e-2
allele num: 11506
num of homozygotes: 23

Other
type: Population
allele count: 122
allele frequency: 1.425233644859813e-1
allele num: 856
num of homozygotes: 12

South Asian
type: Population
allele count: 1833
allele frequency: 1.438775510204082e-1
allele num: 12740
num of homozygotes: 94

African
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allele count: 1556
allele frequency: 1.518048780487805e-1
allele num: 10250
num of homozygotes: 103

European (Finnish)
type: Population
allele count: 942
allele frequency: 1.424682395644283e-1
allele num: 6612
num of homozygotes: 55

European (Non-Finnish)
type: Population
allele count: 9020
allele frequency: 1.382799325463744e-1
allele num: 65230
num of homozygotes: 516

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.64e-1

DP
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SIO_000300: 4.462844e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 5.743e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.878048780487805e-4
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.599110838571209e-5
allele num: 65230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 4.462844e6

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.743e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 945
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533036946190403e-5
allele num: 65230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 5.743e1

FS
type: SiteQuality
SIO_000300: 6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 4.462844e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
all individuals: 3049
bin: 6.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 1491
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variant carriers: 4

GenotypeQuality
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bin: 9.75e1
variant carriers: 62

GenotypeQuality
all individuals: 50
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variant carriers: 6

GenotypeQuality
all individuals: 1882
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variant carriers: 6

GenotypeQuality
all individuals: 162
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variant carriers: 1

GenotypeQuality
all individuals: 1383
bin: 7.25e1
variant carriers: 6

South Asian
type: Population
allele count: 40
allele frequency: 3.139717425431711e-3
allele num: 12740
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.902439024390244e-4
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.607335303320007e-4
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.21232561704737e-4
allele num: 65230
num of homozygotes: 0

East Asian
type: Population
allele count: 45
allele frequency: 5.268087099040038e-3
allele num: 8542
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

MQ
type: SiteQuality
SIO_000300: 5.743e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 4.462844e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
all individuals: 1147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
all individuals: 10499
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.280675079823628e-4
allele num: 65770
num of homozygotes: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.478633742422002e-4
allele num: 13526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.314e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 4.105479e6

VQSLOD
type: SiteQuality
SIO_000300: -8.358e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 1.419e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.563570537588609e-5
allele num: 65738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.148e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.102839e6

MQ
type: SiteQuality
SIO_000300: 5.641e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.246e0

MQRankSum
type: SiteQuality
SIO_000300: -4.027e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 9.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.102259e6

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.939487975174554e-4
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.55e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
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