3-71026062-C-CCAAGAATAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026062
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026072
    reference: chr 3
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: CCAAGAATAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14900
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

3-71026070-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026070
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026070
    reference: chr 3
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+22T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-71026073-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026073
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026073
    reference: chr 3
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+19G>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+19G>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14918
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-71026074-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026074
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026074
    reference: chr 3
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+18T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+18T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7341
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-71026079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026079
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026079
    reference: chr 3
allele count: 4
allele frequency: 3.300711303285858e-5
allele num: 121186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+13A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+13A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4359
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

3-71026086-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026086
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026086
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+6C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+6C>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1536+6C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-71026088-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026088
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026088
    reference: chr 3
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1218+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1536+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1530+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1530+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1530+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1530+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1302+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1527+4A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1530+4A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1536+4A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

3-71026098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026098
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026098
    reference: chr 3
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1212G>A
  hgvsp: ENST00000497355.1:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1524G>A
  hgvsp: ENST00000498215.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1524G>A
  hgvsp: ENST00000318789.4:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1524G>A
  hgvsp: ENST00000468577.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1530G>A
  hgvsp: ENST00000491238.1:c.1530G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1521G>A
  hgvsp: ENST00000493089.1:c.1521G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1524G>A
  hgvsp: ENST00000327590.4:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1296G>A
  hgvsp: ENST00000484350.1:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1524G>A
  hgvsp: ENST00000475937.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14769
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr510Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-71026104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026104
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026104
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1290G>A
  hgvsp: ENST00000484350.1:c.1290G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1524G>A
  hgvsp: ENST00000491238.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1518G>A
  hgvsp: ENST00000468577.1:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1515G>A
  hgvsp: ENST00000493089.1:c.1515G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1518G>A
  hgvsp: ENST00000498215.1:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1518G>A
  hgvsp: ENST00000318789.4:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1518G>A
  hgvsp: ENST00000475937.1:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1518G>A
  hgvsp: ENST00000327590.4:c.1518G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1206G>A
  hgvsp: ENST00000497355.1:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala508Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

3-71026106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026106
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026106
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1204G>A
  hgvsp: ENSP00000418225.1:p.Ala402Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1516G>A
  hgvsp: ENSP00000419393.1:p.Ala506Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1516G>A
  hgvsp: ENSP00000318902.4:p.Ala506Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1516G>A
  hgvsp: ENSP00000333560.4:p.Ala506Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1516G>A
  hgvsp: ENSP00000418102.1:p.Ala506Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1288G>A
  hgvsp: ENSP00000417857.1:p.Ala430Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1516G>A
  hgvsp: ENSP00000418883.1:p.Ala506Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1522G>A
  hgvsp: ENSP00000420736.1:p.Ala508Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1513G>A
  hgvsp: ENSP00000418524.1:p.Ala505Thr
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14932
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala508Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

3-71026107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026107
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026107
    reference: chr 3
allele count: 6
allele frequency: 4.942502224126001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1515C>T
  hgvsp: ENST00000327590.4:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1515C>T
  hgvsp: ENST00000498215.1:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1512C>T
  hgvsp: ENST00000493089.1:c.1512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1515C>T
  hgvsp: ENST00000468577.1:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1515C>T
  hgvsp: ENST00000475937.1:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1203C>T
  hgvsp: ENST00000497355.1:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1287C>T
  hgvsp: ENST00000484350.1:c.1287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1515C>T
  hgvsp: ENST00000318789.4:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1521C>T
  hgvsp: ENST00000491238.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn507Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-71026133-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026133
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026133
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1489C>G
  hgvsp: ENSP00000333560.4:p.Arg497Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1489C>G
  hgvsp: ENSP00000418102.1:p.Arg497Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1489C>G
  hgvsp: ENSP00000418883.1:p.Arg497Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1261C>G
  hgvsp: ENSP00000417857.1:p.Arg421Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1486C>G
  hgvsp: ENSP00000418524.1:p.Arg496Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1177C>G
  hgvsp: ENSP00000418225.1:p.Arg393Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1489C>G
  hgvsp: ENSP00000419393.1:p.Arg497Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1489C>G
  hgvsp: ENSP00000318902.4:p.Arg497Gly
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1495C>G
  hgvsp: ENSP00000420736.1:p.Arg499Gly
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg499Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-71026133-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026133
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026133
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1489C>A
  hgvsp: ENST00000475937.1:c.1489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1261C>A
  hgvsp: ENST00000484350.1:c.1261C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1489C>A
  hgvsp: ENST00000327590.4:c.1489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1489C>A
  hgvsp: ENST00000498215.1:c.1489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1489C>A
  hgvsp: ENST00000318789.4:c.1489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1489C>A
  hgvsp: ENST00000468577.1:c.1489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1495C>A
  hgvsp: ENST00000491238.1:c.1495C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1486C>A
  hgvsp: ENST00000493089.1:c.1486C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1177C>A
  hgvsp: ENST00000497355.1:c.1177C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg499Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

3-71026149-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026149
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026149
    reference: chr 3
allele count: 13
allele frequency: 1.07080491581826e-4
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1470C>T
  hgvsp: ENST00000493089.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1161C>T
  hgvsp: ENST00000497355.1:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1473C>T
  hgvsp: ENST00000498215.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1245C>T
  hgvsp: ENST00000484350.1:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1473C>T
  hgvsp: ENST00000468577.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1473C>T
  hgvsp: ENST00000318789.4:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1473C>T
  hgvsp: ENST00000475937.1:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1479C>T
  hgvsp: ENST00000491238.1:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1473C>T
  hgvsp: ENST00000327590.4:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile493Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-71026170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026170
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026170
    reference: chr 3
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1449G>A
  hgvsp: ENST00000493089.1:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1452G>A
  hgvsp: ENST00000475937.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1224G>A
  hgvsp: ENST00000484350.1:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1452G>A
  hgvsp: ENST00000498215.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1140G>A
  hgvsp: ENST00000497355.1:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1452G>A
  hgvsp: ENST00000327590.4:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1452G>A
  hgvsp: ENST00000318789.4:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1452G>A
  hgvsp: ENST00000468577.1:c.1452G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1458G>A
  hgvsp: ENST00000491238.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys486Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

3-71026185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026185
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026185
    reference: chr 3
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1437C>T
  hgvsp: ENST00000475937.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1437C>T
  hgvsp: ENST00000498215.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1209C>T
  hgvsp: ENST00000484350.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1125C>T
  hgvsp: ENST00000497355.1:c.1125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1437C>T
  hgvsp: ENST00000318789.4:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1437C>T
  hgvsp: ENST00000468577.1:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1434C>T
  hgvsp: ENST00000493089.1:c.1434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1443C>T
  hgvsp: ENST00000491238.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1437C>T
  hgvsp: ENST00000327590.4:c.1437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19879
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu481Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-71026200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026200
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026200
    reference: chr 3
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-7T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-7T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1435-7T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-71026207-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026207
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026207
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-14A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-14A>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-71026211-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026211
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026211
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-18T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-18T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

3-71026213-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026213
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026213
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-20T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-20T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19726
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-71026215-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026215
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026215
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-22T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-22T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

3-71026217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026217
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026217
    reference: chr 3
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-24C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-24C>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14933
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-71026220-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026220
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026220
    reference: chr 3
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-27T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-71026226-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026226
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026226
    reference: chr 3
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-33A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-33A>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-71026228-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026228
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026228
    reference: chr 3
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-35T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-35T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

3-71026231-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026231
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026231
    reference: chr 3
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-38T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-38T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

3-71026237-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026237
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026237
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-44C>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-44C>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-71026240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026240
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026240
    reference: chr 3
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-47C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-47C>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

3-71026240-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026240
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026239
    reference: chr 3
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-48delT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-48delT
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

3-71026241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026241
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026241
    reference: chr 3
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-48T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-48T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-71026244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026244
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026244
    reference: chr 3
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-51G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-51G>A
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16578
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-71026245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026245
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026245
    reference: chr 3
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1429-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1426-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1429-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1429-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1201-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1435-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1429-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1429-52C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1117-52C>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14867
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-71026743-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026743
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026743
    reference: chr 3
allele count: 2
allele frequency: 1.656451880072884e-5
allele num: 120740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+51A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+51A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2369
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-71026745-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026745
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026745
    reference: chr 3
allele count: 5
allele frequency: 4.141061105497672e-5
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+49A>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+49A>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7275
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/3-71026748-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026748
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026748
    reference: chr 3
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+46T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+46T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4405
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

3-71026749-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026747
    reference: chr 3
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+43_1428+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+43_1425+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+43_1428+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+43_1428+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+43_1428+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+43_1200+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+43_1116+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+43_1434+44delAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+43_1428+44delAT
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10989
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: CAT
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

3-71026753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026753
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026753
    reference: chr 3
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+41A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+41A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

3-71026754-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026754
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026754
    reference: chr 3
allele count: 2
allele frequency: 1.655272871732905e-5
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+40T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+40T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

3-71026756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026756
    reference: chr 3
allele count: 3
allele frequency: 2.482539472377611e-5
allele num: 120844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+38G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+38G>A
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-71026767-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026767
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026767
    reference: chr 3
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+27T>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+27T>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-71026772-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026772
    reference: chr 3
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+22T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+22T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-71026773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026773
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026773
    reference: chr 3
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+21A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+21A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5119
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-71026779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026779
    reference: chr 3
allele count: 8
allele frequency: 6.602730228949671e-5
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+15C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+15C>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10784
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

3-71026781-GTTAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026777
    reference: chr 3
allele count: 2
allele frequency: 1.650301179965344e-5
allele num: 121190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+9_1116+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+9_1428+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+9_1200+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+9_1428+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+9_1428+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+9_1428+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+9_1434+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+9_1428+12delATAA
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+9_1425+12delATAA
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24296
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11283
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: GTTAT
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

3-71026783-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026783
    reference: chr 3
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+11A>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+11A>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-71026785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026785
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026785
    reference: chr 3
allele count: 24
allele frequency: 1.979838643150583e-4
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1116+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1428+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1428+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1425+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1434+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1428+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1428+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1200+9A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1428+9A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-71026809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026809
    reference: chr 3
allele count: 279
allele frequency: 2.299589535631274e-3
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1410A>G
  hgvsp: ENST00000493089.1:c.1410A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1413A>G
  hgvsp: ENST00000498215.1:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1185A>G
  hgvsp: ENST00000484350.1:c.1185A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1413A>G
  hgvsp: ENST00000468577.1:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1101A>G
  hgvsp: ENST00000497355.1:c.1101A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1413A>G
  hgvsp: ENST00000475937.1:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1413A>G
  hgvsp: ENST00000327590.4:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1413A>G
  hgvsp: ENST00000318789.4:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1419A>G
  hgvsp: ENST00000491238.1:c.1419A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 9.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7414
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala473Ala
num of homozygotes: 5
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-71026813-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026813
    reference: chr 3
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1181A>G
  hgvsp: ENSP00000417857.1:p.Tyr394Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1406A>G
  hgvsp: ENSP00000418524.1:p.Tyr469Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1409A>G
  hgvsp: ENSP00000318902.4:p.Tyr470Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1409A>G
  hgvsp: ENSP00000418883.1:p.Tyr470Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1409A>G
  hgvsp: ENSP00000418102.1:p.Tyr470Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1409A>G
  hgvsp: ENSP00000333560.4:p.Tyr470Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1409A>G
  hgvsp: ENSP00000419393.1:p.Tyr470Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1097A>G
  hgvsp: ENSP00000418225.1:p.Tyr366Cys
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1415A>G
  hgvsp: ENSP00000420736.1:p.Tyr472Cys
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24405
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr472Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-71026815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026815
    reference: chr 3
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1413A>G
  hgvsp: ENST00000491238.1:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1404A>G
  hgvsp: ENST00000493089.1:c.1404A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1407A>G
  hgvsp: ENST00000327590.4:c.1407A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1407A>G
  hgvsp: ENST00000468577.1:c.1407A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1179A>G
  hgvsp: ENST00000484350.1:c.1179A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1407A>G
  hgvsp: ENST00000475937.1:c.1407A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1407A>G
  hgvsp: ENST00000498215.1:c.1407A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1095A>G
  hgvsp: ENST00000497355.1:c.1095A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1407A>G
  hgvsp: ENST00000318789.4:c.1407A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr471Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-71026821-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026821
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026821
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1401A>T
  hgvsp: ENST00000318789.4:c.1401A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1401A>T
  hgvsp: ENST00000498215.1:c.1401A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1173A>T
  hgvsp: ENST00000484350.1:c.1173A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1401A>T
  hgvsp: ENST00000327590.4:c.1401A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1407A>T
  hgvsp: ENST00000491238.1:c.1407A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1401A>T
  hgvsp: ENST00000475937.1:c.1401A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1398A>T
  hgvsp: ENST00000493089.1:c.1398A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1401A>T
  hgvsp: ENST00000468577.1:c.1401A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1089A>T
  hgvsp: ENST00000497355.1:c.1089A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro469Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

3-71026824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026824
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026824
    reference: chr 3
allele count: 10
allele frequency: 8.240490473993012e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1398A>G
  hgvsp: ENST00000475937.1:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1398A>G
  hgvsp: ENST00000468577.1:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1398A>G
  hgvsp: ENST00000498215.1:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1404A>G
  hgvsp: ENST00000491238.1:c.1404A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1398A>G
  hgvsp: ENST00000327590.4:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1170A>G
  hgvsp: ENST00000484350.1:c.1170A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1398A>G
  hgvsp: ENST00000318789.4:c.1398A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1086A>G
  hgvsp: ENST00000497355.1:c.1086A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1395A>G
  hgvsp: ENST00000493089.1:c.1395A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro468Pro
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-71026838-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026838
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026838
    reference: chr 3
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1381G>T
  hgvsp: ENSP00000418524.1:p.Ala461Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1156G>T
  hgvsp: ENSP00000417857.1:p.Ala386Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1390G>T
  hgvsp: ENSP00000420736.1:p.Ala464Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1384G>T
  hgvsp: ENSP00000419393.1:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1384G>T
  hgvsp: ENSP00000418102.1:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1384G>T
  hgvsp: ENSP00000418883.1:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1384G>T
  hgvsp: ENSP00000318902.4:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1384G>T
  hgvsp: ENSP00000333560.4:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1072G>T
  hgvsp: ENSP00000418225.1:p.Ala358Ser
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala464Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-71026838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026838
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026838
    reference: chr 3
allele count: 6
allele frequency: 4.943805411818991e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1390G>A
  hgvsp: ENSP00000420736.1:p.Ala464Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1384G>A
  hgvsp: ENSP00000318902.4:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1384G>A
  hgvsp: ENSP00000418883.1:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1156G>A
  hgvsp: ENSP00000417857.1:p.Ala386Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1384G>A
  hgvsp: ENSP00000333560.4:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1072G>A
  hgvsp: ENSP00000418225.1:p.Ala358Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1381G>A
  hgvsp: ENSP00000418524.1:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1384G>A
  hgvsp: ENSP00000419393.1:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1384G>A
  hgvsp: ENSP00000418102.1:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala464Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-71026839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026839
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026839
    reference: chr 3
allele count: 6
allele frequency: 4.943886883868097e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1383C>T
  hgvsp: ENST00000318789.4:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1383C>T
  hgvsp: ENST00000498215.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1155C>T
  hgvsp: ENST00000484350.1:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1383C>T
  hgvsp: ENST00000327590.4:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1389C>T
  hgvsp: ENST00000491238.1:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1071C>T
  hgvsp: ENST00000497355.1:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1383C>T
  hgvsp: ENST00000475937.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1380C>T
  hgvsp: ENST00000493089.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1383C>T
  hgvsp: ENST00000468577.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn463Asn
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-71026851-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026851
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026851
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1368A>G
  hgvsp: ENST00000493089.1:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1371A>G
  hgvsp: ENST00000468577.1:c.1371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1377A>G
  hgvsp: ENST00000491238.1:c.1377A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1143A>G
  hgvsp: ENST00000484350.1:c.1143A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1371A>G
  hgvsp: ENST00000498215.1:c.1371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1059A>G
  hgvsp: ENST00000497355.1:c.1059A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1371A>G
  hgvsp: ENST00000327590.4:c.1371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1371A>G
  hgvsp: ENST00000318789.4:c.1371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1371A>G
  hgvsp: ENST00000475937.1:c.1371A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11273
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu459Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-71026854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026854
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026854
    reference: chr 3
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1368A>G
  hgvsp: ENST00000318789.4:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1365A>G
  hgvsp: ENST00000493089.1:c.1365A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1368A>G
  hgvsp: ENST00000498215.1:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1368A>G
  hgvsp: ENST00000327590.4:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1374A>G
  hgvsp: ENST00000491238.1:c.1374A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1368A>G
  hgvsp: ENST00000468577.1:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1368A>G
  hgvsp: ENST00000475937.1:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1056A>G
  hgvsp: ENST00000497355.1:c.1056A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1140A>G
  hgvsp: ENST00000484350.1:c.1140A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln458Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/3-71026863-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026863
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026863
    reference: chr 3
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1359G>T
  hgvsp: ENST00000318789.4:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1359G>T
  hgvsp: ENST00000475937.1:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1047G>T
  hgvsp: ENST00000497355.1:c.1047G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1131G>T
  hgvsp: ENST00000484350.1:c.1131G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1365G>T
  hgvsp: ENST00000491238.1:c.1365G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1359G>T
  hgvsp: ENST00000468577.1:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1359G>T
  hgvsp: ENST00000498215.1:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1359G>T
  hgvsp: ENST00000327590.4:c.1359G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1356G>T
  hgvsp: ENST00000493089.1:c.1356G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala455Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

3-71026863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026863
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026863
    reference: chr 3
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1359G>A
  hgvsp: ENST00000498215.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1356G>A
  hgvsp: ENST00000493089.1:c.1356G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1359G>A
  hgvsp: ENST00000468577.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1047G>A
  hgvsp: ENST00000497355.1:c.1047G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1131G>A
  hgvsp: ENST00000484350.1:c.1131G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1359G>A
  hgvsp: ENST00000318789.4:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1365G>A
  hgvsp: ENST00000491238.1:c.1365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1359G>A
  hgvsp: ENST00000327590.4:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1359G>A
  hgvsp: ENST00000475937.1:c.1359G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala455Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

3-71026878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026878
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026878
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-5T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-8T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-5T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1355-5T>C
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-71026888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026888
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026888
    reference: chr 3
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-18A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-15A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-15A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-71026893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026893
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026893
    reference: chr 3
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-23G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-20G>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-20G>A
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-71026894-TATTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026894
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026890
    reference: chr 3
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-25_1349-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-25_1349-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-25_1349-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-25_1349-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-25_1355-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-25_1037-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-25_1121-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-28_1349-25delTAAT
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-25_1349-22delTAAT
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: TATTA
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-71026901-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026901
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026901
    reference: chr 3
allele count: 9
allele frequency: 7.41521932570939e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-31A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-28A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-28A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-71026903-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026903
    reference: chr 3
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-33A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-30A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-30A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

3-71026915-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026915
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026915
    reference: chr 3
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-45T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-42T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-42T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24451
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-71026918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026918
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026918
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-48C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-45C>T
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-45C>T
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-71026921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026921
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026921
    reference: chr 3
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-51G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-48G>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-48G>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24465
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

3-71026922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026922
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026922
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-52A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-49A>G
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-49A>G
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4746
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

3-71026923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026923
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026923
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1349-53C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1355-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1037-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1349-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1349-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1121-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1349-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1349-50C>A
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1349-50C>A
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

3-71026928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71026928
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 71026928
    reference: chr 3
allele count: 29
allele frequency: 2.388876074994234e-4
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418225
  ensembl transcript: ENST00000497355
  gene symbol: FOXP1
  hgvsc: ENST00000497355.1:c.1036+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418883
  ensembl transcript: ENST00000468577
  gene symbol: FOXP1
  hgvsc: ENST00000468577.1:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418524
  ensembl transcript: ENST00000493089
  gene symbol: FOXP1
  hgvsc: ENST00000493089.1:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000419393
  ensembl transcript: ENST00000475937
  gene symbol: FOXP1
  hgvsc: ENST00000475937.1:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000418102
  ensembl transcript: ENST00000498215
  gene symbol: FOXP1
  hgvsc: ENST00000498215.1:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000420736
  ensembl transcript: ENST00000491238
  gene symbol: FOXP1
  hgvsc: ENST00000491238.1:c.1354+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000417857
  ensembl transcript: ENST00000484350
  gene symbol: FOXP1
  hgvsc: ENST00000484350.1:c.1120+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000318902
  ensembl transcript: ENST00000318789
  gene symbol: FOXP1
  hgvsc: ENST00000318789.4:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114861
  ensembl protein: ENSP00000333560
  ensembl transcript: ENST00000327590
  gene symbol: FOXP1
  hgvsc: ENST00000327590.4:c.1348+51T>C
  variant of: http://identifiers.org/hgnc/3823
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 2
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511715797430083e-5
allele num: 66150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.637e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.958353e6

QD
type: SiteQuality
SIO_000300: 7.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.843e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

FS
type: SiteQuality
SIO_000300: 7.203e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.973234e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

DP
type: SiteQuality
SIO_000300: 1.977682e6

MQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e0

GenotypeQuality
all individuals: 14924
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004446580939791e-5
allele num: 66568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.674e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.978571e6

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
all individuals: 7359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14930
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19539
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.852080123266564e-4
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.983683e6

QD
type: SiteQuality
SIO_000300: 1.417e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e-1

FS
type: SiteQuality
SIO_000300: 7.785e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

GenotypeQuality
all individuals: 2915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

FS
type: SiteQuality
SIO_000300: 1.2273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.986582e6

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

GenotypeQuality
all individuals: 5295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.351e1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
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ClippingRankSum
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SIO_000300: -4.48e-1

BaseQRankSum
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SIO_000300: 2.76e-1

DP
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SIO_000300: 1.987182e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
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DP
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FS
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MQ
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66734
num of homozygotes: 0

South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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Other
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.932e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

South Asian
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allele frequency: 2.422774076317383e-4
allele num: 16510
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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African
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allele num: 10406
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MQ
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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Other
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African
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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FS
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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African
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VQSLOD
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -2.42e-1

MQRankSum
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SIO_000300: 9.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 4.622140050843541e-4
allele num: 8654
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FS
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QD
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ClippingRankSum
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MQ
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele num: 6614
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Other
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African
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East Asian
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South Asian
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MQ
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SIO_000300: 6.0e1

MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
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Other
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66722
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East Asian
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European (Finnish)
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Latino
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South Asian
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Other
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African
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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Other
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South Asian
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.984792e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.466e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.939e0

QD
type: SiteQuality
SIO_000300: 1.347e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

DP
type: SiteQuality
SIO_000300: 1.983967e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 1.626e1

FS
type: SiteQuality
SIO_000300: 3.259e0

MQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

ClippingRankSum
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SIO_000300: -4.75e-1

BaseQRankSum
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SIO_000300: 3.64e0

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.495e0

VQSLOD
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SIO_000300: -1.215e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.855e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.980876e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

FS
type: SiteQuality
SIO_000300: 3.136e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.976098e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.975431e6

QD
type: SiteQuality
SIO_000300: 1.281e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.975431e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.449e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
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allele num: 904
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
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allele frequency: 2.325040688212044e-4
allele num: 8602
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.461012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 5.820721769499418e-4
allele num: 8590
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 2.463102e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.379e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.167e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
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SIO_000300: 4.58e0

DP
type: SiteQuality
SIO_000300: 2.469263e6

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.893e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.522976721746472e-5
allele num: 66328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 2.125e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

FS
type: SiteQuality
SIO_000300: 2.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 2.471306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.337e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013591296748335e-5
allele num: 66366
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.999e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 3
allele frequency: 4.545454545454545e-4
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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DP
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BaseQRankSum
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SIO_000300: -3.014e0

ClippingRankSum
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SIO_000300: -1.182e0

MQ
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QD
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FS
type: SiteQuality
SIO_000300: 1.605e0

VQSLOD
type: SiteQuality
SIO_000300: 9.63e-1

ReadPosRankSum
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SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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QD
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.201237274392624e-4
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
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DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.553e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

QD
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SIO_000300: 1.244e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

FS
type: SiteQuality
SIO_000300: 9.257e0

DP
type: SiteQuality
SIO_000300: 2.513592e6

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
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SIO_000300: 1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

MQ
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SIO_000300: 5.792e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

FS
type: SiteQuality
SIO_000300: 2.409e0

QD
type: SiteQuality
SIO_000300: 1.426e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 2.513956e6

VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

ReadPosRankSum
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SIO_000300: 1.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 8
allele frequency: 7.727975270479134e-4
allele num: 10352
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 11
allele frequency: 1.27285350613284e-3
allele num: 8642
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
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Other
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BaseQRankSum
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
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South Asian
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allele frequency: 1.211387038158692e-2
allele num: 16510
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African
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European (Non-Finnish)
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allele frequency: 8.246371596497541e-4
allele num: 66696
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European (Finnish)
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allele frequency: 7.559721802237678e-4
allele num: 6614
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Latino
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allele frequency: 1.296008294453084e-3
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East Asian
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allele num: 8650
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QD
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
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South Asian
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European (Finnish)
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BaseQRankSum
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SIO_000300: 1.38e0

ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
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African
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allele frequency: 9.632055480639569e-5
allele num: 10382
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Latino
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num of homozygotes: 0

Other
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South Asian
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East Asian
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FS
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele num: 10386
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East Asian
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South Asian
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MQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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SIO_000300: 1.432e0

BaseQRankSum
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ReadPosRankSum
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49902563333833e-4
allele num: 66710
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InbreedingCoeff
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FS
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQ
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SIO_000300: 5.971e1

ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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BaseQRankSum
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SIO_000300: 9.379999999999999e-1

MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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South Asian
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.852080123266564e-4
allele num: 10384
num of homozygotes: 0

Other
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South Asian
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allele num: 16512
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East Asian
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European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Latino
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European (Finnish)
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allele count: 0
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66726
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Latino
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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East Asian
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European (Finnish)
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
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allele num: 66726
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 1.122e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

VQSLOD
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SIO_000300: 9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
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SIO_000300: -2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

DP
type: SiteQuality
SIO_000300: 2.525142e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 2.524978e6

VQSLOD
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 1.0338e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-3

InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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SIO_000300: 1.815e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 5.823e1

DP
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.525036e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.967e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.6487e1

VQSLOD
type: SiteQuality
SIO_000300: -2.109e0

QD
type: SiteQuality
SIO_000300: 1.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.846e0

FS
type: SiteQuality
SIO_000300: 6.207e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.733e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.563e1

DP
type: SiteQuality
SIO_000300: 2.524968e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.99199712256092e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.837e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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Other
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.528751e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.239e0

FS
type: SiteQuality
SIO_000300: 1.171e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.609e0

VQSLOD
type: SiteQuality
SIO_000300: -3.807e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 7.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.173e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49599856128046e-5
allele num: 66726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.154e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.527e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.529657e6

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.577e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 2.529868e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

QD
type: SiteQuality
SIO_000300: 9.93e0

FS
type: SiteQuality
SIO_000300: 5.174e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.578e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.530187e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.904e0