1-24696223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696223
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696223
    reference: chr 1
allele count: 5
allele frequency: 4.122827270028695e-5
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4151G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.678G>A
  hgvsp: ENST00000374409.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.387G>A
  hgvsp: ENST00000438866.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.537G>A
  hgvsp: ENST00000003583.8:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.537G>A
  hgvsp: ENST00000440416.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.678G>A
  hgvsp: ENST00000337248.4:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.656G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro226Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-24696224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696224
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696224
    reference: chr 1
allele count: 8
allele frequency: 6.596306068601583e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.386C>T
  hgvsp: ENSP00000416176.1:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.655C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.677C>T
  hgvsp: ENSP00000337461.4:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.536C>T
  hgvsp: ENSP00000408712.1:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.536C>T
  hgvsp: ENSP00000003583.8:p.Pro179Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4150C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.677C>T
  hgvsp: ENSP00000363530.1:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14124
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro226Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

1-24696231-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696231
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696231
    reference: chr 1
allele count: 8
allele frequency: 6.594892255947769e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.670A>G
  hgvsp: ENSP00000337461.4:p.Thr224Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4143A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.670A>G
  hgvsp: ENSP00000363530.1:p.Thr224Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.648A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.529A>G
  hgvsp: ENSP00000408712.1:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.529A>G
  hgvsp: ENSP00000003583.8:p.Thr177Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.379A>G
  hgvsp: ENSP00000416176.1:p.Thr127Ala
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14117
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr224Ala
num of homozygotes: 1
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-24696233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696233
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696233
    reference: chr 1
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.377C>T
  hgvsp: ENSP00000416176.1:p.Ser126Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.668C>T
  hgvsp: ENSP00000363530.1:p.Ser223Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.646C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.668C>T
  hgvsp: ENSP00000337461.4:p.Ser223Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.527C>T
  hgvsp: ENSP00000003583.8:p.Ser176Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.527C>T
  hgvsp: ENSP00000408712.1:p.Ser176Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4141C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser223Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

1-24696235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696235
    reference: chr 1
allele count: 6
allele frequency: 4.94600610007419e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.666G>A
  hgvsp: ENST00000337248.4:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4139G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.375G>A
  hgvsp: ENST00000438866.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.666G>A
  hgvsp: ENST00000374409.1:c.666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.644G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.525G>A
  hgvsp: ENST00000003583.8:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.525G>A
  hgvsp: ENST00000440416.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr222Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-24696236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696236
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696236
    reference: chr 1
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.524C>T
  hgvsp: ENSP00000408712.1:p.Thr175Met
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.665C>T
  hgvsp: ENSP00000337461.4:p.Thr222Met
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.524C>T
  hgvsp: ENSP00000003583.8:p.Thr175Met
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4138C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.374C>T
  hgvsp: ENSP00000416176.1:p.Thr125Met
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.643C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.665C>T
  hgvsp: ENSP00000363530.1:p.Thr222Met
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14111
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr222Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-24696251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696251
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696251
    reference: chr 1
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.628G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4123G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.359G>A
  hgvsp: ENSP00000416176.1:p.Arg120His
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.650G>A
  hgvsp: ENSP00000363530.1:p.Arg217His
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.509G>A
  hgvsp: ENSP00000003583.8:p.Arg170His
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.650G>A
  hgvsp: ENSP00000337461.4:p.Arg217His
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.509G>A
  hgvsp: ENSP00000408712.1:p.Arg170His
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg217His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-24696252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696252
    reference: chr 1
allele count: 4
allele frequency: 3.297554863069035e-5
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.649C>T
  hgvsp: ENSP00000337461.4:p.Arg217Cys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.508C>T
  hgvsp: ENSP00000003583.8:p.Arg170Cys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4122C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.627C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.649C>T
  hgvsp: ENSP00000363530.1:p.Arg217Cys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.358C>T
  hgvsp: ENSP00000416176.1:p.Arg120Cys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.508C>T
  hgvsp: ENSP00000408712.1:p.Arg170Cys
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg217Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-24696255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696255
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.646A>G
  hgvsp: ENSP00000337461.4:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4119A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.355A>G
  hgvsp: ENSP00000416176.1:p.Asn119Asp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.505A>G
  hgvsp: ENSP00000003583.8:p.Asn169Asp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.624A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.505A>G
  hgvsp: ENSP00000408712.1:p.Asn169Asp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.646A>G
  hgvsp: ENSP00000363530.1:p.Asn216Asp
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn216Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-24696263-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696263
    reference: chr 1
allele count: 2
allele frequency: 1.649103712132456e-5
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.497C>A
  hgvsp: ENSP00000003583.8:p.Ser166Ter
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.616C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4111C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.638C>A
  hgvsp: ENSP00000363530.1:p.Ser213Ter
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.638C>A
  hgvsp: ENSP00000337461.4:p.Ser213Ter
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.497C>A
  hgvsp: ENSP00000408712.1:p.Ser166Ter
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.347C>A
  hgvsp: ENSP00000416176.1:p.Ser116Ter
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser213Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

1-24696283-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696283
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696283
    reference: chr 1
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.477A>T
  hgvsp: ENST00000440416.1:c.477A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.618A>T
  hgvsp: ENST00000337248.4:c.618A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.618A>T
  hgvsp: ENST00000374409.1:c.618A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.327A>T
  hgvsp: ENST00000438866.1:c.327A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.596A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.477A>T
  hgvsp: ENST00000003583.8:c.477A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4091A>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr206Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-24696291-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696291
    reference: chr 1
allele count: 2
allele frequency: 1.654670306941342e-5
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.469C>A
  hgvsp: ENSP00000408712.1:p.Pro157Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.469C>A
  hgvsp: ENSP00000003583.8:p.Pro157Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.319C>A
  hgvsp: ENSP00000416176.1:p.Pro107Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4083C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.610C>A
  hgvsp: ENSP00000363530.1:p.Pro204Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.588C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.610C>A
  hgvsp: ENSP00000337461.4:p.Pro204Thr
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7630
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro204Thr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

1-24696292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696292
    reference: chr 1
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4082G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.318G>A
  hgvsp: ENST00000438866.1:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.609G>A
  hgvsp: ENST00000337248.4:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.468G>A
  hgvsp: ENST00000440416.1:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.587G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.468G>A
  hgvsp: ENST00000003583.8:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.609G>A
  hgvsp: ENST00000374409.1:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser203Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-24696293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696293
    reference: chr 1
allele count: 37
allele frequency: 3.063522554149831e-4
allele num: 120776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.467C>T
  hgvsp: ENSP00000003583.8:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.317C>T
  hgvsp: ENSP00000416176.1:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.467C>T
  hgvsp: ENSP00000408712.1:p.Ser156Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.608C>T
  hgvsp: ENSP00000363530.1:p.Ser203Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.586C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4081C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.608C>T
  hgvsp: ENSP00000337461.4:p.Ser203Leu
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser203Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-24696312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696312
    reference: chr 1
allele count: 1
allele frequency: 8.358408559010364e-6
allele num: 119640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4062G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.448G>A
  hgvsp: ENSP00000408712.1:p.Glu150Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.589G>A
  hgvsp: ENSP00000337461.4:p.Glu197Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.589G>A
  hgvsp: ENSP00000363530.1:p.Glu197Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.448G>A
  hgvsp: ENSP00000003583.8:p.Glu150Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.298G>A
  hgvsp: ENSP00000416176.1:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.567G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu197Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

1-24696313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696313
    reference: chr 1
allele count: 6
allele frequency: 5.017477546787978e-5
allele num: 119582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.588C>T
  hgvsp: ENST00000337248.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.297C>T
  hgvsp: ENST00000438866.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.447C>T
  hgvsp: ENST00000003583.8:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.588C>T
  hgvsp: ENST00000374409.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.447C>T
  hgvsp: ENST00000440416.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.566C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4061C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14094
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn196Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

1-24696316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696316
    reference: chr 1
allele count: 2
allele frequency: 1.675603217158177e-5
allele num: 119360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.444C>T
  hgvsp: ENST00000440416.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.444C>T
  hgvsp: ENST00000003583.8:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4058C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.585C>T
  hgvsp: ENST00000374409.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.563C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.585C>T
  hgvsp: ENST00000337248.4:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.294C>T
  hgvsp: ENST00000438866.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14092
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile195Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-24696318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696318
    reference: chr 1
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.583A>G
  hgvsp: ENSP00000337461.4:p.Ile195Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.442A>G
  hgvsp: ENSP00000408712.1:p.Ile148Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4056A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.583A>G
  hgvsp: ENSP00000363530.1:p.Ile195Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.442A>G
  hgvsp: ENSP00000003583.8:p.Ile148Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.292A>G
  hgvsp: ENSP00000416176.1:p.Ile98Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.561A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile195Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-24696327-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696327
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696327
    reference: chr 1
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4047C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.283C>A
  hgvsp: ENSP00000416176.1:p.His95Asn
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.574C>A
  hgvsp: ENSP00000337461.4:p.His192Asn
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.433C>A
  hgvsp: ENSP00000003583.8:p.His145Asn
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.574C>A
  hgvsp: ENSP00000363530.1:p.His192Asn
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.552C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.433C>A
  hgvsp: ENSP00000408712.1:p.His145Asn
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14090
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His192Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

1-24696334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696334
    reference: chr 1
allele count: 1
allele frequency: 8.50065455040038e-6
allele num: 117638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-5C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-5C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14089
  bin: 9.75e1
  variant carriers: 1
hgvs: c.572-5C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-24696335-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696335
    reference: chr 1
allele count: 3
allele frequency: 2.552192333214231e-5
allele num: 117546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-6C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-6C>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14089
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
hgvs: c.572-6C>G
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

1-24696337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696337
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696337
    reference: chr 1
allele count: 1
allele frequency: 8.514841368505305e-6
allele num: 117442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-8C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5161
  bin: 7.75e1
  variant carriers: 0
hgvs: c.572-8C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/1-24696339-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696339
    reference: chr 1
allele count: 1
allele frequency: 8.529221111528095e-6
allele num: 117244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-10T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-10T>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-24696353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696353
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696353
    reference: chr 1
allele count: 5
allele frequency: 4.313766090347517e-5
allele num: 115908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-24G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-24G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-24696362-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696362
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696362
    reference: chr 1
allele count: 3
allele frequency: 2.606383902973015e-5
allele num: 115102
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-33C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-33C>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-24696366-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696366
    reference: chr 1
allele count: 1
allele frequency: 8.75457426505349e-6
allele num: 114226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-37A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-37A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14080
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-24696370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696370
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696370
    reference: chr 1
allele count: 1
allele frequency: 8.792600147715683e-6
allele num: 113732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-41G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-41G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/1-24696372-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24696372
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24696372
    reference: chr 1
allele count: 31
allele frequency: 2.732866688999771e-4
allele num: 113434
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.572-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.281-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.550-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.431-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4045-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.431-43G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.572-43G>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6650
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-24700152-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700152
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700152
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+40A>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+40A>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-24700153-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700153
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700153
    reference: chr 1
allele count: 20
allele frequency: 1.650600818698006e-4
allele num: 121168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+39A>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+39A>C
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/1-24700156-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700156
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700156
    reference: chr 1
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+36G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+36G>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18869
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

1-24700163-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700163
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700163
    reference: chr 1
allele count: 9
allele frequency: 7.425742574257426e-5
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+29C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+29C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18869
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-24700168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700168
    reference: chr 1
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+24C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+24C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-24700170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700170
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700170
    reference: chr 1
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+22G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+22G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18860
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-24700173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700173
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700173
    reference: chr 1
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+19C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+19C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18859
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-24700182-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700182
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700182
    reference: chr 1
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.430+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.549+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.280+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.571+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.571+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4044+10T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.430+10T>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18857
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-24700217-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700217
    reference: chr 1
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.405T>G
  hgvsp: ENST00000003583.8:c.405T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.524T>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.255T>G
  hgvsp: ENST00000438866.1:c.255T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.546T>G
  hgvsp: ENST00000337248.4:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.546T>G
  hgvsp: ENST00000374409.1:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.405T>G
  hgvsp: ENST00000440416.1:c.405T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4019T>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala182Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-24700219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700219
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.544G>A
  hgvsp: ENSP00000337461.4:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4017G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.253G>A
  hgvsp: ENSP00000416176.1:p.Ala85Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.403G>A
  hgvsp: ENSP00000408712.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.544G>A
  hgvsp: ENSP00000363530.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.403G>A
  hgvsp: ENSP00000003583.8:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.522G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18855
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala182Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-24700220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700220
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700220
    reference: chr 1
allele count: 4
allele frequency: 3.296359171295305e-5
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4016C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.402C>T
  hgvsp: ENST00000003583.8:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.252C>T
  hgvsp: ENST00000438866.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.402C>T
  hgvsp: ENST00000440416.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.543C>T
  hgvsp: ENST00000337248.4:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.543C>T
  hgvsp: ENST00000374409.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.521C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18854
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe181Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-24700227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700227
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4009G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.514G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.536G>A
  hgvsp: ENSP00000363530.1:p.Gly179Glu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.536G>A
  hgvsp: ENSP00000337461.4:p.Gly179Glu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.395G>A
  hgvsp: ENSP00000408712.1:p.Gly132Glu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.245G>A
  hgvsp: ENSP00000416176.1:p.Gly82Glu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.395G>A
  hgvsp: ENSP00000003583.8:p.Gly132Glu
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18852
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly179Glu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-24700230-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700230
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700230
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.533G>A
  hgvsp: ENSP00000337461.4:p.Arg178Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4006G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.533G>A
  hgvsp: ENSP00000363530.1:p.Arg178Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.392G>A
  hgvsp: ENSP00000408712.1:p.Arg131Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.511G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.392G>A
  hgvsp: ENSP00000003583.8:p.Arg131Lys
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.242G>A
  hgvsp: ENSP00000416176.1:p.Arg81Lys
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18851
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48978
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg178Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-24700236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700236
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700236
    reference: chr 1
allele count: 8
allele frequency: 6.593587735926811e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.4000C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.527C>T
  hgvsp: ENSP00000363530.1:p.Thr176Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.236C>T
  hgvsp: ENSP00000416176.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.505C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.386C>T
  hgvsp: ENSP00000408712.1:p.Thr129Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.527C>T
  hgvsp: ENSP00000337461.4:p.Thr176Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.386C>T
  hgvsp: ENSP00000003583.8:p.Thr129Ile
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18851
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr176Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

1-24700242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700242
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700242
    reference: chr 1
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.380C>T
  hgvsp: ENSP00000408712.1:p.Ser127Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.230C>T
  hgvsp: ENSP00000416176.1:p.Ser77Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.499C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3994C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.521C>T
  hgvsp: ENSP00000337461.4:p.Ser174Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.380C>T
  hgvsp: ENSP00000003583.8:p.Ser127Leu
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.521C>T
  hgvsp: ENSP00000363530.1:p.Ser174Leu
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18849
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser174Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-24700246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700246
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700246
    reference: chr 1
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.376A>G
  hgvsp: ENSP00000003583.8:p.Met126Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.376A>G
  hgvsp: ENSP00000408712.1:p.Met126Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.226A>G
  hgvsp: ENSP00000416176.1:p.Met76Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.517A>G
  hgvsp: ENSP00000363530.1:p.Met173Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.495A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.517A>G
  hgvsp: ENSP00000337461.4:p.Met173Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3990A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18848
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met173Val
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-24700252-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700252
    reference: chr 1
allele count: 6
allele frequency: 4.947229551451187e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.220G>T
  hgvsp: ENSP00000416176.1:p.Gly74Trp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.511G>T
  hgvsp: ENSP00000337461.4:p.Gly171Trp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.370G>T
  hgvsp: ENSP00000003583.8:p.Gly124Trp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.511G>T
  hgvsp: ENSP00000363530.1:p.Gly171Trp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3984G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.370G>T
  hgvsp: ENSP00000408712.1:p.Gly124Trp
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.489G>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly171Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

1-24700252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700252
    reference: chr 1
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.511G>A
  hgvsp: ENSP00000337461.4:p.Gly171Arg
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.370G>A
  hgvsp: ENSP00000408712.1:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.220G>A
  hgvsp: ENSP00000416176.1:p.Gly74Arg
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.511G>A
  hgvsp: ENSP00000363530.1:p.Gly171Arg
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.370G>A
  hgvsp: ENSP00000003583.8:p.Gly124Arg
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3984G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.489G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly171Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

1-24700253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700253
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700253
    reference: chr 1
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.219C>T
  hgvsp: ENST00000438866.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.510C>T
  hgvsp: ENST00000337248.4:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.510C>T
  hgvsp: ENST00000374409.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.488C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3983C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.369C>T
  hgvsp: ENST00000440416.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.369C>T
  hgvsp: ENST00000003583.8:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18843
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48977
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala170Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

1-24700254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700254
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700254
    reference: chr 1
allele count: 4
allele frequency: 3.298207424264912e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3982C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.509C>T
  hgvsp: ENSP00000337461.4:p.Ala170Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.368C>T
  hgvsp: ENSP00000408712.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.218C>T
  hgvsp: ENSP00000416176.1:p.Ala73Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.487C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.368C>T
  hgvsp: ENSP00000003583.8:p.Ala123Val
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.509C>T
  hgvsp: ENSP00000363530.1:p.Ala170Val
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18842
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala170Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

1-24700257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700257
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700257
    reference: chr 1
allele count: 12
allele frequency: 9.895438202988422e-5
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.365G>A
  hgvsp: ENSP00000408712.1:p.Arg122Gln
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.484G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3979G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.365G>A
  hgvsp: ENSP00000003583.8:p.Arg122Gln
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.506G>A
  hgvsp: ENSP00000337461.4:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.215G>A
  hgvsp: ENSP00000416176.1:p.Arg72Gln
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.506G>A
  hgvsp: ENSP00000363530.1:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg169Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-24700258-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700258
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700258
    reference: chr 1
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.505C>G
  hgvsp: ENSP00000363530.1:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3978C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.364C>G
  hgvsp: ENSP00000003583.8:p.Arg122Gly
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.505C>G
  hgvsp: ENSP00000337461.4:p.Arg169Gly
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.483C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.364C>G
  hgvsp: ENSP00000408712.1:p.Arg122Gly
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.214C>G
  hgvsp: ENSP00000416176.1:p.Arg72Gly
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18836
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg169Gly
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS

1-24700261-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700261
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700261
    reference: chr 1
allele count: 4
allele frequency: 3.298642608566575e-5
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.361A>G
  hgvsp: ENSP00000003583.8:p.Thr121Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.480A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.502A>G
  hgvsp: ENSP00000363530.1:p.Thr168Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3975A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.502A>G
  hgvsp: ENSP00000337461.4:p.Thr168Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.361A>G
  hgvsp: ENSP00000408712.1:p.Thr121Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.211A>G
  hgvsp: ENSP00000416176.1:p.Thr71Ala
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr168Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

1-24700264-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700264
    reference: chr 1
allele count: 4
allele frequency: 3.298860243785772e-5
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.477T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3972T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.358T>A
  hgvsp: ENSP00000408712.1:p.Cys120Ser
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.499T>A
  hgvsp: ENSP00000337461.4:p.Cys167Ser
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.358T>A
  hgvsp: ENSP00000003583.8:p.Cys120Ser
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.499T>A
  hgvsp: ENSP00000363530.1:p.Cys167Ser
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.208T>A
  hgvsp: ENSP00000416176.1:p.Cys70Ser
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18833
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48976
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys167Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

1-24700266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700266
    reference: chr 1
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.356T>C
  hgvsp: ENSP00000003583.8:p.Val119Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.356T>C
  hgvsp: ENSP00000408712.1:p.Val119Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.206T>C
  hgvsp: ENSP00000416176.1:p.Val69Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.497T>C
  hgvsp: ENSP00000337461.4:p.Val166Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.497T>C
  hgvsp: ENSP00000363530.1:p.Val166Ala
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.475T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3970T>C
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val166Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-24700267-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700267
    reference: chr 1
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.496G>T
  hgvsp: ENSP00000363530.1:p.Val166Phe
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3969G>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.496G>T
  hgvsp: ENSP00000337461.4:p.Val166Phe
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.205G>T
  hgvsp: ENSP00000416176.1:p.Val69Phe
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.355G>T
  hgvsp: ENSP00000003583.8:p.Val119Phe
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.355G>T
  hgvsp: ENSP00000408712.1:p.Val119Phe
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.474G>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val166Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-24700267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700267
    reference: chr 1
allele count: 4
allele frequency: 3.299404457495422e-5
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.355G>A
  hgvsp: ENSP00000003583.8:p.Val119Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.496G>A
  hgvsp: ENSP00000363530.1:p.Val166Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.474G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.496G>A
  hgvsp: ENSP00000337461.4:p.Val166Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.205G>A
  hgvsp: ENSP00000416176.1:p.Val69Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.355G>A
  hgvsp: ENSP00000408712.1:p.Val119Ile
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3969G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48977
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Val166Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-24700267-CGTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700264
    reference: chr 1
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.493_495delAAC
  hgvsp: ENSP00000337461.4:p.Asn165del
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.471_473delAAC
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.493_495delAAC
  hgvsp: ENSP00000363530.1:p.Asn165del
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3966_3968delAAC
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.352_354delAAC
  hgvsp: ENSP00000408712.1:p.Asn118del
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.352_354delAAC
  hgvsp: ENSP00000003583.8:p.Asn118del
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.202_204delAAC
  hgvsp: ENSP00000416176.1:p.Asn68del
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18830
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48977
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn165del
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: CGTT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-24700271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700271
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.470C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.351C>T
  hgvsp: ENST00000003583.8:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.351C>T
  hgvsp: ENST00000440416.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.492C>T
  hgvsp: ENST00000374409.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.492C>T
  hgvsp: ENST00000337248.4:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.201C>T
  hgvsp: ENST00000438866.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3965C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn164Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

1-24700277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700277
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700277
    reference: chr 1
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3959G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.486G>A
  hgvsp: ENST00000374409.1:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.195G>A
  hgvsp: ENST00000438866.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.486G>A
  hgvsp: ENST00000337248.4:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.345G>A
  hgvsp: ENST00000003583.8:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.345G>A
  hgvsp: ENST00000440416.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.464G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48974
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln162Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

1-24700303-A-ATGGAATGATGGAGGACGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700321
    reference: chr 1
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: ATGGAATGATGGAGGACGT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.463-4_463-3insACGTCCTCCATCATTCCA
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-24700303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700303
    reference: chr 1
allele count: 2
allele frequency: 1.652537471287161e-5
allele num: 121026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-3T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-3T>C
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18827
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
hgvs: c.463-3T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

1-24700305-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700305
    reference: chr 1
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-5C>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-5C>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: c.463-5C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-24700306-G-GCTCGTTAGTGAGACCCCTCTGGGCTTGTGTCTGCCATTTACTGGCTGTGTGACACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700362
    reference: chr 1
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: GCTCGTTAGTGAGACCCCTCTGGGCTTGTGTCTGCCATTTACTGGCTGTGTGACACT
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-24700308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700308
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700308
    reference: chr 1
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-8C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-8C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48972
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: c.463-8C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-24700308-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700308
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700308
    reference: chr 1
allele count: 1
allele frequency: 8.263506701703935e-6
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-8C>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-8C>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
hgvs: c.463-8C>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

1-24700312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700312
    reference: chr 1
allele count: 4
allele frequency: 3.30611300294244e-5
allele num: 120988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-12T>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-12T>C
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18824
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

1-24700320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700320
    reference: chr 1
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-20G>C
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-20G>C
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48972
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

1-24700324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700324
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700324
    reference: chr 1
allele count: 4
allele frequency: 3.307534563736191e-5
allele num: 120936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-24A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-24A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18822
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-24700325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700325
    reference: chr 1
allele count: 11
allele frequency: 9.097374993797244e-5
allele num: 120914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-25C>T
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-25C>T
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18818
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48974
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-24700327-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700327
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700327
    reference: chr 1
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-27T>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-27T>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-24700340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700340
    reference: chr 1
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-40G>A
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-40G>A
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-24700348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700348
    reference: chr 1
allele count: 7
allele frequency: 5.800752440459419e-5
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-48A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-48A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18814
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-24700352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24700352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24700352
    reference: chr 1
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000497384
  gene symbol: STPG1
  hgvsc: ENST00000497384.1:n.441-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl transcript: ENST00000468303
  gene symbol: STPG1
  hgvsc: ENST00000468303.1:n.3936-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000408712
  ensembl transcript: ENST00000440416
  gene symbol: STPG1
  hgvsc: ENST00000440416.1:c.322-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000363530
  ensembl transcript: ENST00000374409
  gene symbol: STPG1
  hgvsc: ENST00000374409.1:c.463-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000337461
  ensembl transcript: ENST00000337248
  gene symbol: STPG1
  hgvsc: ENST00000337248.4:c.463-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000416176
  ensembl transcript: ENST00000438866
  gene symbol: STPG1
  hgvsc: ENST00000438866.1:c.172-52A>G
  variant of: http://identifiers.org/hgnc/28070
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000001460
  ensembl protein: ENSP00000003583
  ensembl transcript: ENST00000003583
  gene symbol: STPG1
  hgvsc: ENST00000003583.8:c.322-52A>G
  variant of: http://identifiers.org/hgnc/28070
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18814
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14123
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20350
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49802087081684e-5
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.425e0

QD
type: SiteQuality
SIO_000300: 1.364e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

DP
type: SiteQuality
SIO_000300: 2.145409e6

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.652745647144771e-4
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 2.145552e6

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.767012687427913e-4
allele num: 10404
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

FS
type: SiteQuality
SIO_000300: 1.763e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.279999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.145863e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

QD
type: SiteQuality
SIO_000300: 1.182e1

FS
type: SiteQuality
SIO_000300: 1.221e0

DP
type: SiteQuality
SIO_000300: 2.14535e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 1.753e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.145785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998410842253606e-5
allele num: 66702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.132e1

DP
type: SiteQuality
SIO_000300: 2.145624e6

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 2
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

DP
type: SiteQuality
SIO_000300: 2.145473e6

FS
type: SiteQuality
SIO_000300: 7.343e0

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.711e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14110
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variant carriers: 4

GenotypeQuality
all individuals: 4486
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.341e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.145524e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 6.595e0

VQSLOD
type: SiteQuality
SIO_000300: -9.888e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.707e0

QD
type: SiteQuality
SIO_000300: 1.222e1

DP
type: SiteQuality
SIO_000300: 2.146096e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217433649866082e-4
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.499e0

DP
type: SiteQuality
SIO_000300: 2.144845e6

MQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.066e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5208
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002912825440678e-5
allele num: 66602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 9.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.706e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.139368e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 4486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.101e0

DP
type: SiteQuality
SIO_000300: 2.139143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.616e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: -7.84e-2

QD
type: SiteQuality
SIO_000300: 1.221e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14115
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.655913009522093e-4
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.895193977996526e-4
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 2.14062e6

FS
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18421
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variant carriers: 0

GenotypeQuality
all individuals: 5186
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variant carriers: 0

GenotypeQuality
all individuals: 14090
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variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.981e0

FS
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.427e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

DP
type: SiteQuality
SIO_000300: 2.122475e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 3188
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 4485
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 18422
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.837711617046118e-4
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.26e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

DP
type: SiteQuality
SIO_000300: 2.121535e6

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 1765
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variant carriers: 0

GenotypeQuality
all individuals: 2163
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variant carriers: 0

GenotypeQuality
all individuals: 7501
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variant carriers: 0

GenotypeQuality
all individuals: 3189
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019506008816958e-5
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.117398e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e0

GenotypeQuality
all individuals: 4485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5181
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

DP
type: SiteQuality
SIO_000300: 2.113936e6

FS
type: SiteQuality
SIO_000300: 1.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.116e0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
all individuals: 302
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.131e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 4.294e0

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.802e0

DP
type: SiteQuality
SIO_000300: 2.098376e6

MQ
type: SiteQuality
SIO_000300: 5.724e1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2163
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3393
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518787400139728e-5
allele num: 65842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

FS
type: SiteQuality
SIO_000300: 6.795e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.272e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -2.117e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.090109e6

GenotypeQuality
all individuals: 3417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 3393
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GenotypeQuality
all individuals: 16292
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GenotypeQuality
all individuals: 7381
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GenotypeQuality
all individuals: 5162
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variant carriers: 0

GenotypeQuality
all individuals: 3165
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.987676406281057e-4
allele num: 10062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.133685261806249e-5
allele num: 14018
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.443e0

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

FS
type: SiteQuality
SIO_000300: 5.395e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 2.088749e6

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 4479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520172691617768e-5
allele num: 65782
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.086262e6

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
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FS
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SIO_000300: 1.109e0

MQRankSum
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QD
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ClippingRankSum
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SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65724
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 13004
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African
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allele frequency: 5.029169181251257e-4
allele num: 9942
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65370
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11524
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
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SIO_000300: -2.47e-1

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 2.065691e6

BaseQRankSum
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SIO_000300: -4.839e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.535202186127913e-5
allele num: 65138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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QD
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.496e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.018122581958868e-4
allele num: 9822
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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MQ
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DP
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BaseQRankSum
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SIO_000300: 5.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
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SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543352779578356e-5
allele num: 64794
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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DP
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MQ
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.8e-3

BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
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allele count: 28
allele frequency: 4.327933720786448e-4
allele num: 64696
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11482
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

QD
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ClippingRankSum
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FS
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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allele num: 16420
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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FS
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66624
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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allele num: 904
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.041184636742249e-3
allele num: 8644
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66630
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Other
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South Asian
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num of homozygotes: 0

QD
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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FS
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ClippingRankSum
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SIO_000300: -1.09e-1

InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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MQRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -5.742e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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allele frequency: 9.615384615384615e-5
allele num: 10400
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Latino
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Other
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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QD
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MQ
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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SIO_000300: 4.4e-2

DP
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InbreedingCoeff
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SIO_000300: 1.06e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele num: 8646
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10402
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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allele num: 8652
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Other
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BaseQRankSum
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QD
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 66704
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East Asian
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66702
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Latino
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Other
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South Asian
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allele num: 16504
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East Asian
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European (Finnish)
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African
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ReadPosRankSum
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MQ
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FS
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DP
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.11e0

MQ
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SIO_000300: 5.991e1

DP
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SIO_000300: 4.791353e6

BaseQRankSum
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SIO_000300: -6.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.199508201637329e-4
allele num: 66694
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 4.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
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East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.893e1

MQRankSum
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SIO_000300: 1.32e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 4.789723e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 4.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.065e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 4.789336e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.999820003599928e-5
allele num: 66668
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

FS
type: SiteQuality
SIO_000300: 3.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 4.789861e6

GenotypeQuality
all individuals: 850
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
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Other
type: Population
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allele num: 908
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10384
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East Asian
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allele frequency: 4.626416840157298e-4
allele num: 8646
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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allele frequency: 1.650115508085566e-4
allele num: 66662
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Latino
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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MQ
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 4.786679e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.852822192255828e-4
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

DP
type: SiteQuality
SIO_000300: 4.786302e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 845
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.62962962962963e-4
allele num: 8640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.114e1

DP
type: SiteQuality
SIO_000300: 4.786098e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

FS
type: SiteQuality
SIO_000300: 2.804e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 758
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.65e0

QD
type: SiteQuality
SIO_000300: 1.438e1

VQSLOD
type: SiteQuality
SIO_000300: -2.63e0

FS
type: SiteQuality
SIO_000300: 1.821e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 4.785413e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 5330
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.17e1

DP
type: SiteQuality
SIO_000300: 4.785908e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 758
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 4.785908e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

DP
type: SiteQuality
SIO_000300: 4.785908e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.784696e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.889e0

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001741009785676e-5
allele num: 66628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.783991e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e0

QD
type: SiteQuality
SIO_000300: 1.481e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 3.314e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.503e0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48974
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.778161e6

FS
type: SiteQuality
SIO_000300: 1.9283e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.896e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

QD
type: SiteQuality
SIO_000300: 6.44e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 110
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1130
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GenotypeQuality
all individuals: 69
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48974
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

QD
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
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SIO_000300: -1.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQ
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DP
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VQSLOD
type: SiteQuality
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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FS
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 6.6e-1

ClippingRankSum
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SIO_000300: -4.13e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.776984e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.349e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.012506012506013e-5
allele num: 66528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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BaseQRankSum
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SIO_000300: 7.36e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
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allele num: 902
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South Asian
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allele frequency: 6.073858114674441e-5
allele num: 16464
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66506
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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East Asian
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allele num: 8618
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African
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 3.007066606525334e-5
allele num: 66510
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South Asian
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allele num: 16466
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Latino
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num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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African
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FS
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VQSLOD
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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South Asian
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East Asian
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African
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Latino
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Other
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European (Finnish)
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

GenotypeQuality
all individuals: 48969
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.768e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.760051e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

GenotypeQuality
all individuals: 327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48971
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054661604290966e-4
allele num: 66372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 4.753802e6

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.84e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.503e1