1-66058294-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058294
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058294
    reference: chr 1
allele count: 1
allele frequency: 8.507597284374947e-6
allele num: 117542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-46T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20162T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-46T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-46T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-46T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-46T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-46T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-66058303-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058303
    reference: chr 1
allele count: 1
allele frequency: 8.490550017830155e-6
allele num: 117778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-37A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20171A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-37A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-37A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-37A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-37A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-37A>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-66058308-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058308
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058308
    reference: chr 1
allele count: 1
allele frequency: 8.461955050094773e-6
allele num: 118176
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-32T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-32T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-32T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-32T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20176T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-32T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-32T>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-66058317-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058317
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058317
    reference: chr 1
allele count: 1
allele frequency: 8.37885846432282e-6
allele num: 119348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-23T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-23T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20185T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-23T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-23T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-23T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-23T>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

1-66058322-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058322
    reference: chr 1
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-18T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20190T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-18T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-18T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-18T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-18T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-18T>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

1-66058325-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058325
    reference: chr 1
allele count: 1
allele frequency: 8.318360284820657e-6
allele num: 120216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-15T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-15T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-15T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-15T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20193T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-15T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-15T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

1-66058337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058337
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058337
    reference: chr 1
allele count: 3
allele frequency: 2.481348530214554e-5
allele num: 120902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20205T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.495-3T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.645-3T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.495-3T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.495-3T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.495-3T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.495-3T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: c.495-3T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-66058349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058349
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058349
    reference: chr 1
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.504G>A
  hgvsp: ENST00000371059.3:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.504G>A
  hgvsp: ENST00000344610.8:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.504G>A
  hgvsp: ENST00000371058.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.654G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.504G>A
  hgvsp: ENST00000371060.3:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.504G>A
  hgvsp: ENST00000349533.6:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20217G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10026
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val168Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-66058355-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058355
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058355
    reference: chr 1
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.510A>G
  hgvsp: ENST00000371059.3:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.510A>G
  hgvsp: ENST00000371058.1:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20223A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.510A>G
  hgvsp: ENST00000349533.6:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.660A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.510A>G
  hgvsp: ENST00000371060.3:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.510A>G
  hgvsp: ENST00000344610.8:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10027
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7103
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu170Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-66058363-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058363
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058363
    reference: chr 1
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.518C>G
  hgvsp: ENSP00000360097.1:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.518C>G
  hgvsp: ENSP00000340884.8:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.518C>G
  hgvsp: ENSP00000330393.6:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.518C>G
  hgvsp: ENSP00000360099.3:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.668C>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20231C>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.518C>G
  hgvsp: ENSP00000360098.3:p.Pro173Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29659
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro173Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-66058364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058364
    reference: chr 1
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20232T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.519T>C
  hgvsp: ENST00000371059.3:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.519T>C
  hgvsp: ENST00000371060.3:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.519T>C
  hgvsp: ENST00000349533.6:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.519T>C
  hgvsp: ENST00000371058.1:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.519T>C
  hgvsp: ENST00000344610.8:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.669T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29678
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro173Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-66058376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058376
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058376
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.531A>G
  hgvsp: ENST00000371060.3:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20244A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.531A>G
  hgvsp: ENST00000344610.8:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.531A>G
  hgvsp: ENST00000349533.6:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.531A>G
  hgvsp: ENST00000371059.3:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.531A>G
  hgvsp: ENST00000371058.1:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.681A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln177Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-66058381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058381
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058381
    reference: chr 1
allele count: 9
allele frequency: 7.424517406368586e-5
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.686G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.536G>A
  hgvsp: ENSP00000340884.8:p.Gly179Asp
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20249G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.536G>A
  hgvsp: ENSP00000330393.6:p.Gly179Asp
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.536G>A
  hgvsp: ENSP00000360097.1:p.Gly179Asp
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.536G>A
  hgvsp: ENSP00000360099.3:p.Gly179Asp
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.536G>A
  hgvsp: ENSP00000360098.3:p.Gly179Asp
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly179Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-66058389-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058389
    reference: chr 1
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.544C>G
  hgvsp: ENSP00000360097.1:p.Gln182Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.544C>G
  hgvsp: ENSP00000360098.3:p.Gln182Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.694C>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.544C>G
  hgvsp: ENSP00000330393.6:p.Gln182Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20257C>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.544C>G
  hgvsp: ENSP00000340884.8:p.Gln182Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.544C>G
  hgvsp: ENSP00000360099.3:p.Gln182Glu
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln182Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-66058397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058397
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058397
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20265T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.552T>C
  hgvsp: ENST00000371059.3:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.552T>C
  hgvsp: ENST00000344610.8:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.552T>C
  hgvsp: ENST00000349533.6:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.702T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.552T>C
  hgvsp: ENST00000371058.1:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.552T>C
  hgvsp: ENST00000371060.3:c.552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val184Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-66058399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058399
    reference: chr 1
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.554A>G
  hgvsp: ENSP00000360099.3:p.His185Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.554A>G
  hgvsp: ENSP00000360098.3:p.His185Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.704A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.554A>G
  hgvsp: ENSP00000340884.8:p.His185Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.554A>G
  hgvsp: ENSP00000360097.1:p.His185Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.554A>G
  hgvsp: ENSP00000330393.6:p.His185Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20267A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10038
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His185Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-66058416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058416
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058416
    reference: chr 1
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.571C>T
  hgvsp: ENSP00000340884.8:p.His191Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.571C>T
  hgvsp: ENSP00000360097.1:p.His191Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.571C>T
  hgvsp: ENSP00000360099.3:p.His191Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.571C>T
  hgvsp: ENSP00000330393.6:p.His191Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.571C>T
  hgvsp: ENSP00000360098.3:p.His191Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20284C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.721C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29639
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His191Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-66058420-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058420
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058420
    reference: chr 1
allele count: 7
allele frequency: 5.774434105457665e-5
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.575A>C
  hgvsp: ENSP00000360098.3:p.Glu192Ala
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.575A>C
  hgvsp: ENSP00000360097.1:p.Glu192Ala
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.575A>C
  hgvsp: ENSP00000360099.3:p.Glu192Ala
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.575A>C
  hgvsp: ENSP00000340884.8:p.Glu192Ala
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20288A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.725A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.575A>C
  hgvsp: ENSP00000330393.6:p.Glu192Ala
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu192Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

1-66058427-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058427
    reference: chr 1
allele count: 3
allele frequency: 2.47496163809461e-5
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.582T>C
  hgvsp: ENST00000371059.3:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.582T>C
  hgvsp: ENST00000349533.6:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.732T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.582T>C
  hgvsp: ENST00000344610.8:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.582T>C
  hgvsp: ENST00000371060.3:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20295T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.582T>C
  hgvsp: ENST00000371058.1:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10043
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys194Cys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-66058435-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058435
    reference: chr 1
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.740T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.590T>C
  hgvsp: ENSP00000360099.3:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.590T>C
  hgvsp: ENSP00000340884.8:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.590T>C
  hgvsp: ENSP00000360097.1:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.590T>C
  hgvsp: ENSP00000360098.3:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.590T>C
  hgvsp: ENSP00000330393.6:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20303T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu197Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-66058439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058439
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058439
    reference: chr 1
allele count: 133
allele frequency: 1.097395953661837e-3
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.594G>A
  hgvsp: ENST00000371060.3:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.594G>A
  hgvsp: ENST00000344610.8:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.594G>A
  hgvsp: ENST00000371058.1:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.594G>A
  hgvsp: ENST00000349533.6:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.594G>A
  hgvsp: ENST00000371059.3:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.744G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20307G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26295
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10165
  bin: 9.75e1
  variant carriers: 131
hgvs: p.Val198Val
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

1-66058440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058440
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058440
    reference: chr 1
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.595C>T
  hgvsp: ENSP00000340884.8:p.Pro199Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.745C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.595C>T
  hgvsp: ENSP00000360097.1:p.Pro199Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.595C>T
  hgvsp: ENSP00000330393.6:p.Pro199Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.595C>T
  hgvsp: ENSP00000360099.3:p.Pro199Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.595C>T
  hgvsp: ENSP00000360098.3:p.Pro199Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20308C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4084
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro199Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

1-66058442-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058442
    reference: chr 1
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.597T>C
  hgvsp: ENST00000371058.1:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20310T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.747T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.597T>C
  hgvsp: ENST00000371059.3:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.597T>C
  hgvsp: ENST00000344610.8:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.597T>C
  hgvsp: ENST00000349533.6:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.597T>C
  hgvsp: ENST00000371060.3:c.597T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro199Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-66058456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058456
    reference: chr 1
allele count: 20
allele frequency: 1.649865535958819e-4
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.611A>G
  hgvsp: ENSP00000360097.1:p.Lys204Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.611A>G
  hgvsp: ENSP00000330393.6:p.Lys204Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20324A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.611A>G
  hgvsp: ENSP00000340884.8:p.Lys204Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.611A>G
  hgvsp: ENSP00000360098.3:p.Lys204Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.761A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.611A>G
  hgvsp: ENSP00000360099.3:p.Lys204Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10118
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys204Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

1-66058458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058458
    reference: chr 1
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20326C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.613C>T
  hgvsp: ENSP00000360098.3:p.Leu205Phe
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.613C>T
  hgvsp: ENSP00000340884.8:p.Leu205Phe
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.613C>T
  hgvsp: ENSP00000330393.6:p.Leu205Phe
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.613C>T
  hgvsp: ENSP00000360097.1:p.Leu205Phe
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.763C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.613C>T
  hgvsp: ENSP00000360099.3:p.Leu205Phe
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu205Phe
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

1-66058462-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058462
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058462
    reference: chr 1
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.617A>T
  hgvsp: ENSP00000360097.1:p.Asn206Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.617A>T
  hgvsp: ENSP00000360098.3:p.Asn206Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.617A>T
  hgvsp: ENSP00000360099.3:p.Asn206Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.617A>T
  hgvsp: ENSP00000340884.8:p.Asn206Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.617A>T
  hgvsp: ENSP00000330393.6:p.Asn206Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.767A>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20330A>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10119
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn206Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-66058463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058463
    reference: chr 1
allele count: 12
allele frequency: 9.899846552378439e-5
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.618C>T
  hgvsp: ENST00000344610.8:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.618C>T
  hgvsp: ENST00000371059.3:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.768C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.618C>T
  hgvsp: ENST00000349533.6:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.618C>T
  hgvsp: ENST00000371060.3:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.618C>T
  hgvsp: ENST00000371058.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20331C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14300
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn206Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum

1-66058464-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058464
    reference: chr 1
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.619G>T
  hgvsp: ENSP00000330393.6:p.Asp207Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.619G>T
  hgvsp: ENSP00000360097.1:p.Asp207Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.619G>T
  hgvsp: ENSP00000360098.3:p.Asp207Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.769G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20332G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.619G>T
  hgvsp: ENSP00000360099.3:p.Asp207Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.619G>T
  hgvsp: ENSP00000340884.8:p.Asp207Tyr
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp207Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

1-66058466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058466
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058466
    reference: chr 1
allele count: 2
allele frequency: 1.649974425396406e-5
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.621C>T
  hgvsp: ENST00000349533.6:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.771C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.621C>T
  hgvsp: ENST00000371058.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.621C>T
  hgvsp: ENST00000371060.3:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.621C>T
  hgvsp: ENST00000371059.3:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.621C>T
  hgvsp: ENST00000344610.8:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20334C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10128
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp207Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-66058469-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058469
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.624T>C
  hgvsp: ENST00000371060.3:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.624T>C
  hgvsp: ENST00000371059.3:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.624T>C
  hgvsp: ENST00000349533.6:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.624T>C
  hgvsp: ENST00000371058.1:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.624T>C
  hgvsp: ENST00000344610.8:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.774T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20337T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7089
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr208Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-66058472-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058469
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.628_630delCTT
  hgvsp: ENSP00000360098.3:p.Leu210del
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.778_780delCTT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.628_630delCTT
  hgvsp: ENSP00000330393.6:p.Leu210del
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.628_630delCTT
  hgvsp: ENSP00000360099.3:p.Leu210del
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.628_630delCTT
  hgvsp: ENSP00000360097.1:p.Leu210del
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.628_630delCTT
  hgvsp: ENSP00000340884.8:p.Leu210del
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20341_-127+20343delCTT
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu210del
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CCTT
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-66058472-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058472
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.627C>A
  hgvsp: ENST00000371058.1:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.627C>A
  hgvsp: ENST00000371060.3:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.627C>A
  hgvsp: ENST00000371059.3:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.627C>A
  hgvsp: ENST00000349533.6:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.627C>A
  hgvsp: ENST00000344610.8:c.627C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.777C>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20340C>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu209Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-66058472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058472
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.627C>T
  hgvsp: ENST00000371059.3:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.627C>T
  hgvsp: ENST00000371058.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.627C>T
  hgvsp: ENST00000371060.3:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20340C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.627C>T
  hgvsp: ENST00000344610.8:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.627C>T
  hgvsp: ENST00000349533.6:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.777C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu209Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-66058476-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058476
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.631A>G
  hgvsp: ENSP00000340884.8:p.Met211Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.631A>G
  hgvsp: ENSP00000360097.1:p.Met211Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.781A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.631A>G
  hgvsp: ENSP00000360099.3:p.Met211Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.631A>G
  hgvsp: ENSP00000330393.6:p.Met211Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20344A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.631A>G
  hgvsp: ENSP00000360098.3:p.Met211Val
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met211Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-66058477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058477
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058477
    reference: chr 1
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.632T>C
  hgvsp: ENSP00000360098.3:p.Met211Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.632T>C
  hgvsp: ENSP00000360097.1:p.Met211Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.632T>C
  hgvsp: ENSP00000330393.6:p.Met211Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.632T>C
  hgvsp: ENSP00000360099.3:p.Met211Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20345T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.632T>C
  hgvsp: ENSP00000340884.8:p.Met211Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.782T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7088
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met211Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-66058480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058480
    reference: chr 1
allele count: 2
allele frequency: 1.649919978881024e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.635G>A
  hgvsp: ENSP00000340884.8:p.Cys212Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.635G>A
  hgvsp: ENSP00000360098.3:p.Cys212Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.635G>A
  hgvsp: ENSP00000360099.3:p.Cys212Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.785G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.635G>A
  hgvsp: ENSP00000330393.6:p.Cys212Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.635G>A
  hgvsp: ENSP00000360097.1:p.Cys212Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20348G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys212Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-66058482-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058482
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058482
    reference: chr 1
allele count: 6
allele frequency: 4.949678270912391e-5
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.637T>C
  hgvsp: ENST00000371058.1:c.637T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.637T>C
  hgvsp: ENST00000349533.6:c.637T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20350T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.787T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.637T>C
  hgvsp: ENST00000344610.8:c.637T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.637T>C
  hgvsp: ENST00000371059.3:c.637T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.637T>C
  hgvsp: ENST00000371060.3:c.637T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu213Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-66058500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058500
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058500
    reference: chr 1
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.655G>A
  hgvsp: ENSP00000330393.6:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.805G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.655G>A
  hgvsp: ENSP00000360098.3:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.655G>A
  hgvsp: ENSP00000360099.3:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.655G>A
  hgvsp: ENSP00000340884.8:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20368G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.655G>A
  hgvsp: ENSP00000360097.1:p.Gly219Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14314
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly219Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-66058501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058501
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058501
    reference: chr 1
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.806G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.656G>A
  hgvsp: ENSP00000340884.8:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.656G>A
  hgvsp: ENSP00000360099.3:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.656G>A
  hgvsp: ENSP00000360098.3:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.656G>A
  hgvsp: ENSP00000360097.1:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.656G>A
  hgvsp: ENSP00000330393.6:p.Gly219Glu
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20369G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly219Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-66058503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058503
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058503
    reference: chr 1
allele count: 21
allele frequency: 1.732844836122388e-4
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.658G>A
  hgvsp: ENSP00000360098.3:p.Val220Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.658G>A
  hgvsp: ENSP00000330393.6:p.Val220Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.658G>A
  hgvsp: ENSP00000360097.1:p.Val220Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20371G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.658G>A
  hgvsp: ENSP00000340884.8:p.Val220Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.658G>A
  hgvsp: ENSP00000360099.3:p.Val220Ile
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.808G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14303
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val220Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-66058506-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058506
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058506
    reference: chr 1
allele count: 6
allele frequency: 4.950821836424846e-5
allele num: 121192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.661A>G
  hgvsp: ENSP00000340884.8:p.Ile221Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.811A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.661A>G
  hgvsp: ENSP00000330393.6:p.Ile221Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.661A>G
  hgvsp: ENSP00000360097.1:p.Ile221Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20374A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.661A>G
  hgvsp: ENSP00000360098.3:p.Ile221Val
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.661A>G
  hgvsp: ENSP00000360099.3:p.Ile221Val
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10176
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile221Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-66058513-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058513
    reference: chr 1
allele count: 61749
allele frequency: 5.103054444481174e-1
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20381A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.668A>G
  hgvsp: ENSP00000360097.1:p.Gln223Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.668A>G
  hgvsp: ENSP00000330393.6:p.Gln223Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.668A>G
  hgvsp: ENSP00000340884.8:p.Gln223Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.668A>G
  hgvsp: ENSP00000360098.3:p.Gln223Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.818A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.668A>G
  hgvsp: ENSP00000360099.3:p.Gln223Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 2.75e1
  variant carriers: 534
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 8.75e1
  variant carriers: 1609
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.25e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 4.75e1
  variant carriers: 3326
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 4084
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 9.75e1
  variant carriers: 9547
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.25e1
  variant carriers: 1130
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 1871
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.25e1
  variant carriers: 2694
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 8.25e1
  variant carriers: 1989
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 6.75e1
  variant carriers: 3494
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 5.25e1
  variant carriers: 4005
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 9.25e1
  variant carriers: 1260
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 6.25e1
  variant carriers: 3865
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.75e1
  variant carriers: 2510
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.25e1
  variant carriers: 2977
genotype quality: GenotypeQuality
  all individuals: 10868
  bin: 6.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 32
hgvs: p.Gln223Arg
num of homozygotes: 16519
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-66058518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058518
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058518
    reference: chr 1
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.673C>T
  hgvsp: ENSP00000330393.6:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.823C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20386C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.673C>T
  hgvsp: ENSP00000340884.8:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.673C>T
  hgvsp: ENSP00000360097.1:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.673C>T
  hgvsp: ENSP00000360099.3:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.673C>T
  hgvsp: ENSP00000360098.3:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26401
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro225Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-66058521-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058521
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058522
    reference: chr 1
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.677dupT
  hgvsp: ENSP00000360098.3:p.Met227AsnfsTer12
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.677dupT
  hgvsp: ENSP00000360099.3:p.Met227AsnfsTer12
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.677dupT
  hgvsp: ENSP00000330393.6:p.Met227AsnfsTer12
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.827dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.677dupT
  hgvsp: ENSP00000360097.1:p.Met227AsnfsTer12
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.677dupT
  hgvsp: ENSP00000340884.8:p.Met227AsnfsTer12
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20390dupT
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met227AsnfsTer12
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-66058536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058536
    reference: chr 1
allele count: 2
allele frequency: 1.659613310098747e-5
allele num: 120510
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.691C>T
  hgvsp: ENSP00000330393.6:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.691C>T
  hgvsp: ENSP00000340884.8:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.841C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.691C>T
  hgvsp: ENSP00000360098.3:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20404C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.691C>T
  hgvsp: ENSP00000360099.3:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.691C>T
  hgvsp: ENSP00000360097.1:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro231Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-66058540-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058540
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058540
    reference: chr 1
allele count: 1
allele frequency: 8.324731111185109e-6
allele num: 120124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.695T>C
  hgvsp: ENSP00000340884.8:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.695T>C
  hgvsp: ENSP00000330393.6:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20408T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.695T>C
  hgvsp: ENSP00000360099.3:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.845T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.695T>C
  hgvsp: ENSP00000360098.3:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.695T>C
  hgvsp: ENSP00000360097.1:p.Ile232Thr
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile232Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

1-66058540-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058540
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058540
    reference: chr 1
allele count: 30
allele frequency: 2.497419333355533e-4
allele num: 120124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.695T>G
  hgvsp: ENSP00000360098.3:p.Ile232Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.695T>G
  hgvsp: ENSP00000360099.3:p.Ile232Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.695T>G
  hgvsp: ENSP00000360097.1:p.Ile232Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.845T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20408T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.695T>G
  hgvsp: ENSP00000330393.6:p.Ile232Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.695T>G
  hgvsp: ENSP00000340884.8:p.Ile232Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25878
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile232Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

1-66058557-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058557
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058557
    reference: chr 1
allele count: 1
allele frequency: 8.442665856170744e-6
allele num: 118446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+9T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20425T>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-66058562-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058562
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058561
    reference: chr 1
allele count: 3
allele frequency: 2.544054544529435e-5
allele num: 117922
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+18delA
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20434delA
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TA
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-66058565-AATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058565
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058562
    reference: chr 1
allele count: 1
allele frequency: 8.520790729379687e-6
allele num: 117360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+23_703+25delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+23_703+25delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+23_703+25delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+23_853+25delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+23_703+25delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20439_-127+20441delGAT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+23_703+25delGAT
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21729
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33210
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: AATG
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-66058575-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058575
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058575
    reference: chr 1
allele count: 1
allele frequency: 8.598452278589854e-6
allele num: 116300
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+27A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+27A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+27A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20443A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+27A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+27A>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+27A>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD

1-66058578-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058578
    reference: chr 1
allele count: 1
allele frequency: 8.627829928216456e-6
allele num: 115904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+30G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+30G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+30G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+30G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20446G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+30G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+30G>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-66058586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058586
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058586
    reference: chr 1
allele count: 2
allele frequency: 1.748710326134476e-5
allele num: 114370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+38C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+38C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+38C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20454C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+38C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+38C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+38C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-66058591-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058591
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058591
    reference: chr 1
allele count: 3
allele frequency: 2.670702394729814e-5
allele num: 112330
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+43G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20459G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+43G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+43G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+43G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+43G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+43G>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15336
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10482
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-66058594-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66058594
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66058594
    reference: chr 1
allele count: 2
allele frequency: 1.797785128721415e-5
allele num: 111248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.703+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.703+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.703+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.853+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.703+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.703+46A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+20462A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15105
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8451
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum

1-66062083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062083
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062083
    reference: chr 1
allele count: 3
allele frequency: 2.570297640466766e-5
allele num: 116718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-48G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-48G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23951G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-48G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-48G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-48G>A
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-48G>A
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15791
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-66062105-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062105
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062105
    reference: chr 1
allele count: 496
allele frequency: 4.193226586409212e-3
allele num: 118286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-26A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-26A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-26A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-26A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23973A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-26A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-26A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 17841
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 39506
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 12
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-66062107-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062107
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062107
    reference: chr 1
allele count: 1
allele frequency: 8.429997302400863e-6
allele num: 118624
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-24A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-24A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-24A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-24A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23975A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-24A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-24A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-66062108-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062108
    reference: chr 1
allele count: 2
allele frequency: 1.684919966301601e-5
allele num: 118700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-23G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23976G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-23G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-23G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-23G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-23G>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-23G>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-66062112-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062112
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062112
    reference: chr 1
allele count: 1
allele frequency: 8.401384548173538e-6
allele num: 119028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-19T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-19T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23980T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-19T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-19T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-19T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-19T>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18524
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6146
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-66062115-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062115
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062116
    reference: chr 1
allele count: 4
allele frequency: 3.375356522032639e-5
allele num: 118506
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-8dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-8dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23991dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-8dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-8dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-8dupT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-8dupT
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18828
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25374
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39901
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-66062115-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062115
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062114
    reference: chr 1
allele count: 6
allele frequency: 5.06303478304896e-5
allele num: 118506
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-8delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23991delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-8delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-8delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-8delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-8delT
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-8delT
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18828
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25374
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: CT
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-66062117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062117
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062117
    reference: chr 1
allele count: 1
allele frequency: 8.387291575804341e-6
allele num: 119228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-14T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23985T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-14T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-14T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-14T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-14T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-14T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

1-66062123-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062123
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062123
    reference: chr 1
allele count: 13
allele frequency: 1.085015106748794e-4
allele num: 119814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-8T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-8T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-8T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-8T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23991T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-8T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-8T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
hgvs: c.704-8T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

1-66062124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062124
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062124
    reference: chr 1
allele count: 2
allele frequency: 1.668641225450116e-5
allele num: 119858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.704-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.704-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.854-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.704-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.704-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.704-7C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+23992C>T
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: c.704-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

1-66062147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062147
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062147
    reference: chr 1
allele count: 2
allele frequency: 1.659172736473594e-5
allele num: 120542
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.720A>G
  hgvsp: ENST00000349533.6:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24015A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.720A>G
  hgvsp: ENST00000371060.3:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.720A>G
  hgvsp: ENST00000371059.3:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.720A>G
  hgvsp: ENST00000344610.8:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.720A>G
  hgvsp: ENST00000371058.1:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.870A>G
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro240Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-66062149-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062149
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062149
    reference: chr 1
allele count: 1
allele frequency: 8.295037908323241e-6
allele num: 120554
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.722T>C
  hgvsp: ENSP00000360098.3:p.Leu241Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24017T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.722T>C
  hgvsp: ENSP00000340884.8:p.Leu241Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.722T>C
  hgvsp: ENSP00000360097.1:p.Leu241Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.722T>C
  hgvsp: ENSP00000330393.6:p.Leu241Ser
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.872T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.722T>C
  hgvsp: ENSP00000360099.3:p.Leu241Ser
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu241Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-66062149-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062149
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062149
    reference: chr 1
allele count: 1
allele frequency: 8.295037908323241e-6
allele num: 120554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.722T>G
  hgvsp: ENSP00000360099.3:p.Leu241Ter
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24017T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.722T>G
  hgvsp: ENSP00000360098.3:p.Leu241Ter
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.722T>G
  hgvsp: ENSP00000330393.6:p.Leu241Ter
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.722T>G
  hgvsp: ENSP00000340884.8:p.Leu241Ter
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.872T>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.722T>G
  hgvsp: ENSP00000360097.1:p.Leu241Ter
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu241Ter
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-66062157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062157
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062157
    reference: chr 1
allele count: 1
allele frequency: 8.290361625574107e-6
allele num: 120622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24025C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.730C>T
  hgvsp: ENSP00000360099.3:p.His244Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.730C>T
  hgvsp: ENSP00000340884.8:p.His244Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.730C>T
  hgvsp: ENSP00000360098.3:p.His244Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.730C>T
  hgvsp: ENSP00000330393.6:p.His244Tyr
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.880C>T
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.730C>T
  hgvsp: ENSP00000360097.1:p.His244Tyr
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His244Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-66062158-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062158
    reference: chr 1
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.731A>G
  hgvsp: ENSP00000360098.3:p.His244Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.731A>G
  hgvsp: ENSP00000340884.8:p.His244Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.881A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.731A>G
  hgvsp: ENSP00000330393.6:p.His244Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.731A>G
  hgvsp: ENSP00000360099.3:p.His244Arg
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24026A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.731A>G
  hgvsp: ENSP00000360097.1:p.His244Arg
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His244Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-66062176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062176
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062176
    reference: chr 1
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.749A>G
  hgvsp: ENSP00000340884.8:p.Asp250Gly
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.899A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.749A>G
  hgvsp: ENSP00000330393.6:p.Asp250Gly
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24044A>G
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.749A>G
  hgvsp: ENSP00000360098.3:p.Asp250Gly
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.749A>G
  hgvsp: ENSP00000360097.1:p.Asp250Gly
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.749A>G
  hgvsp: ENSP00000360099.3:p.Asp250Gly
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp250Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-66062177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66062177
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 66062177
    reference: chr 1
allele count: 2
allele frequency: 1.657852417977751e-5
allele num: 120638
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000330393
  ensembl transcript: ENST00000349533
  gene symbol: LEPR
  hgvsc: ENST00000349533.6:c.750T>C
  hgvsp: ENST00000349533.6:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000384025
  ensembl transcript: ENST00000406510
  gene symbol: LEPR
  hgvsc: ENST00000406510.3:c.-127+24045T>C
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360099
  ensembl transcript: ENST00000371060
  gene symbol: LEPR
  hgvsc: ENST00000371060.3:c.750T>C
  hgvsp: ENST00000371060.3:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000340884
  ensembl transcript: ENST00000344610
  gene symbol: LEPR
  hgvsc: ENST00000344610.8:c.750T>C
  hgvsp: ENST00000344610.8:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360098
  ensembl transcript: ENST00000371059
  gene symbol: LEPR
  hgvsc: ENST00000371059.3:c.750T>C
  hgvsp: ENST00000371059.3:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116678
  ensembl protein: ENSP00000360097
  ensembl transcript: ENST00000371058
  gene symbol: LEPR
  hgvsc: ENST00000371058.1:c.750T>C
  hgvsp: ENST00000371058.1:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6554
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116678
  ensembl transcript: ENST00000462765
  gene symbol: LEPR
  hgvsc: ENST00000462765.1:n.900T>C
  variant of: http://identifiers.org/hgnc/6554
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp250Asp
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3294
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013581998783702e-4
allele num: 9866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

DP
type: SiteQuality
SIO_000300: 1.65788e6

GenotypeQuality
all individuals: 959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011122345803842e-4
allele num: 9890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64732
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
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FS
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BaseQRankSum
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SIO_000300: 3.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.539124545958259e-5
allele num: 64972
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.73724e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16344
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.827683615819209e-5
allele num: 11328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 4.0e-3

DP
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SIO_000300: 1.776365e6

BaseQRankSum
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SIO_000300: 7.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

QD
type: SiteQuality
SIO_000300: 1.721e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.789543e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -3.42e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

MQRankSum
type: SiteQuality
SIO_000300: -1.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.318e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 1.794152e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.510735550610453e-5
allele num: 66508
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10362
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.388e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.1948e1

DP
type: SiteQuality
SIO_000300: 1.804875e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

African
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allele frequency: 9.620935154897056e-5
allele num: 10394
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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FS
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66630
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European (Finnish)
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East Asian
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African
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Other
type: Population
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ClippingRankSum
type: SiteQuality
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FS
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QD
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MQ
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DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.35021603456553e-4
allele num: 66656
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

VQSLOD
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MQ
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SIO_000300: 5.982e1

FS
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MQRankSum
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InbreedingCoeff
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DP
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.4e-1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10400
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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Latino
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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European (Finnish)
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Other
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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Other
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European (Finnish)
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InbreedingCoeff
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MQ
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DP
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FS
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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allele frequency: 6.73076923076923e-4
allele num: 10400
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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East Asian
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MQRankSum
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DP
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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Other
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African
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European (Non-Finnish)
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South Asian
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East Asian
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 128
allele frequency: 1.920653022027489e-3
allele num: 66644
num of homozygotes: 1

African
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allele count: 4
allele frequency: 3.846153846153846e-4
allele num: 10400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

DP
type: SiteQuality
SIO_000300: 1.818496e6

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.189e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: -1.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.543e0

FS
type: SiteQuality
SIO_000300: 3.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.814455e6

QD
type: SiteQuality
SIO_000300: 1.017e1

VQSLOD
type: SiteQuality
SIO_000300: -1.663e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.606e1

MQRankSum
type: SiteQuality
SIO_000300: -1.488e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.501e0

FS
type: SiteQuality
SIO_000300: 9.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

DP
type: SiteQuality
SIO_000300: 1.814501e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.400384061449832e-4
allele num: 66656
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.609149417289963e-4
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 3.268e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.815981e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.815518e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 1.638e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.842e0

FS
type: SiteQuality
SIO_000300: 2.373e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-2

GenotypeQuality
all individuals: 2021
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.815667e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.001680470531749e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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allele frequency: 3.636804461146806e-4
allele num: 16498
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.816171e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
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South Asian
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Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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South Asian
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European (Finnish)
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Other
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East Asian
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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MQ
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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DP
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

African
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Other
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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FS
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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Other
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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QD
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DP
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MQRankSum
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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DP
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66638
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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Other
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DP
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ClippingRankSum
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MQRankSum
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MQ
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FS
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10175
bin: 9.75e1
variant carriers: 21

African
type: Population
allele count: 18
allele frequency: 1.73176832788147e-3
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.564e0

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.818308e6

GenotypeQuality
all individuals: 2822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7078
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29288
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.637686431429611e-4
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

FS
type: SiteQuality
SIO_000300: 4.175e0

DP
type: SiteQuality
SIO_000300: 1.818332e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

QD
type: SiteQuality
SIO_000300: 1.633e1

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 33

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1396
bin: 6.75e1
variant carriers: 73

GenotypeQuality
all individuals: 465
bin: 8.25e1
variant carriers: 144

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 199

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 57

GenotypeQuality
all individuals: 572
bin: 7.75e1
variant carriers: 118

GenotypeQuality
all individuals: 45698
bin: 9.75e1
variant carriers: 44247

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 60

European (Finnish)
type: Population
allele count: 4014
allele frequency: 6.083661715671416e-1
allele num: 6598
num of homozygotes: 1216

Latino
type: Population
allele count: 5356
allele frequency: 4.679363969945833e-1
allele num: 11446
num of homozygotes: 1251

East Asian
type: Population
allele count: 7590
allele frequency: 8.782689192316593e-1
allele num: 8642
num of homozygotes: 3328

European (Non-Finnish)
type: Population
allele count: 30734
allele frequency: 4.619292391859801e-1
allele num: 66534
num of homozygotes: 7117

African
type: Population
allele count: 5769
allele frequency: 5.553523296110897e-1
allele num: 10388
num of homozygotes: 1596

South Asian
type: Population
allele count: 7825
allele frequency: 4.745875788452208e-1
allele num: 16488
num of homozygotes: 1888

Other
type: Population
allele count: 461
allele frequency: 5.077092511013216e-1
allele num: 908
num of homozygotes: 123

DP
type: SiteQuality
SIO_000300: 3.829463e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.61e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

QD
type: SiteQuality
SIO_000300: 2.04e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.16e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.069e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.664e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.822871e6

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7115
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 2131
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.001e1

DP
type: SiteQuality
SIO_000300: 1.822022e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.966e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.989000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5512
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75561797752809e-4
allele num: 11392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

FS
type: SiteQuality
SIO_000300: 3.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 4.883e1

MQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 1.812509e6

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.656e0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1582
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variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 950
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variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5492
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.107243190423842e-5
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.801899e6

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 1.533e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5492
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 6858
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 2.643171806167401e-3
allele num: 11350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 1.533e0

DP
type: SiteQuality
SIO_000300: 1.801899e6

QD
type: SiteQuality
SIO_000300: 1.321e1

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6125
bin: 6.75e1
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GenotypeQuality
all individuals: 36549
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181998021760633e-5
allele num: 16176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -5.728e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.627e1

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

DP
type: SiteQuality
SIO_000300: 1.737415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.465e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.229e0

GenotypeQuality
all individuals: 409
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 3.25e1
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GenotypeQuality
all individuals: 1754
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 8.25e1
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GenotypeQuality
all individuals: 5435
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.962670353545329e-4
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.36e1

FS
type: SiteQuality
SIO_000300: 9.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.715189e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQ
type: SiteQuality
SIO_000300: 5.822e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

DP
type: SiteQuality
SIO_000300: 1.674589e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63650
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.246096189881324e-5
allele num: 16010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.572464e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.63e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8210
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.576789656259855e-5
allele num: 63420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.209e0

DP
type: SiteQuality
SIO_000300: 1.546051e6

MQRankSum
type: SiteQuality
SIO_000300: -6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.259604484191964e-4
allele num: 15878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.931e0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e0

FS
type: SiteQuality
SIO_000300: 7.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

DP
type: SiteQuality
SIO_000300: 1.428214e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.273885350318471e-4
allele num: 15700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630310737226516e-5
allele num: 61338
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.283e0

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.908e0

DP
type: SiteQuality
SIO_000300: 1.369783e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.361542782250516e-5
allele num: 10682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648532805802836e-5
allele num: 60660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.351598e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63912
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9872
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.563791874554526e-4
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 480

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 2
allele frequency: 1.233197681588359e-4
allele num: 16218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.615526631588664e-5
allele num: 64998
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
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African
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allele count: 470
allele frequency: 4.71603451735902e-2
allele num: 9966
num of homozygotes: 12

East Asian
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 21
allele frequency: 1.879026485325698e-3
allele num: 11176
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533177971298908e-5
allele num: 65224
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 900
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South Asian
type: Population
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
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DP
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.231e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2644e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.888e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.646605e6

GenotypeQuality
all individuals: 1095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 41352
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.606e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.654884e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 2.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534118802160039e-5
allele num: 65184
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.957362952346828e-5
allele num: 11164
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.682298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 2.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1667488899852e-5
allele num: 16216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.007217321571772e-4
allele num: 9976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.068237604320078e-5
allele num: 65184
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.682298e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

QD
type: SiteQuality
SIO_000300: 2.78e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41565
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 953
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variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522950869604947e-5
allele num: 65662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.384e1

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.673291e6

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 722
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4379
bin: 9.75e1
variant carriers: 13

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.507421150278293e-3
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.385e1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 1.677295e6

GenotypeQuality
all individuals: 43106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221747098350641e-4
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.603e0

VQSLOD
type: SiteQuality
SIO_000300: -2.237e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011503945070168e-5
allele num: 66412
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.687215e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1677
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e0

DP
type: SiteQuality
SIO_000300: 1.687248e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

GenotypeQuality
all individuals: 1594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.98e-2

FS
type: SiteQuality
SIO_000300: 8.765000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.1e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.688122e6

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.634e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 1.188e1

FS
type: SiteQuality
SIO_000300: 3.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.688013e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.292e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

GenotypeQuality
all individuals: 1604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.653e0

VQSLOD
type: SiteQuality
SIO_000300: -4.291e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.688155e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0