2-174223517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223517
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223517
    reference: chr 2
allele count: 2
allele frequency: 1.649729444371123e-5
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.99C>T
  hgvsp: ENST00000347703.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.283C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.99C>T
  hgvsp: ENST00000435616.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.99C>T
  hgvsp: ENST00000392567.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.99C>T
  hgvsp: ENST00000410101.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.99C>T
  hgvsp: ENST00000306721.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3805C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.170C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.191C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser33Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

2-174223529-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223529
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223529
    reference: chr 2
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.111T>C
  hgvsp: ENST00000435616.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.203T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.111T>C
  hgvsp: ENST00000392567.2:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.182T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.295T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.111T>C
  hgvsp: ENST00000410101.3:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.111T>C
  hgvsp: ENST00000347703.3:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.111T>C
  hgvsp: ENST00000306721.3:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3817T>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser37Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

2-174223531-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223531
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223531
    reference: chr 2
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.113G>T
  hgvsp: ENSP00000390470.1:p.Cys38Phe
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.205G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3819G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.113G>T
  hgvsp: ENSP00000306968.3:p.Cys38Phe
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.113G>T
  hgvsp: ENSP00000386656.3:p.Cys38Phe
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.113G>T
  hgvsp: ENSP00000272789.4:p.Cys38Phe
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.113G>T
  hgvsp: ENSP00000376348.2:p.Cys38Phe
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.297G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.184G>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys38Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-174223534-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223534
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223534
    reference: chr 2
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.116A>G
  hgvsp: ENSP00000376348.2:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.116A>G
  hgvsp: ENSP00000272789.4:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.208A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.116A>G
  hgvsp: ENSP00000386656.3:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.300A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3822A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.116A>G
  hgvsp: ENSP00000306968.3:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.116A>G
  hgvsp: ENSP00000390470.1:p.Asp39Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.187A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14252
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Asp39Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-174223544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223544
    reference: chr 2
allele count: 3
allele frequency: 2.478478544637399e-5
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.126T>C
  hgvsp: ENST00000410101.3:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.126T>C
  hgvsp: ENST00000306721.3:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.310T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.126T>C
  hgvsp: ENST00000435616.1:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.197T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.126T>C
  hgvsp: ENST00000347703.3:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.126T>C
  hgvsp: ENST00000392567.2:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3832T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.218T>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala42Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-174223544-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223544
    reference: chr 2
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.126T>G
  hgvsp: ENST00000306721.3:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.126T>G
  hgvsp: ENST00000410101.3:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.197T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.126T>G
  hgvsp: ENST00000347703.3:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.126T>G
  hgvsp: ENST00000392567.2:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3832T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.310T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.126T>G
  hgvsp: ENST00000435616.1:c.126T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.218T>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala42Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-174223551-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223551
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223551
    reference: chr 2
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3839A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.204A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.225A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.133A>G
  hgvsp: ENSP00000390470.1:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.317A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.133A>G
  hgvsp: ENSP00000376348.2:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.133A>G
  hgvsp: ENSP00000306968.3:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.133A>G
  hgvsp: ENSP00000272789.4:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.133A>G
  hgvsp: ENSP00000386656.3:p.Asn45Asp
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn45Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

2-174223564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223564
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223564
    reference: chr 2
allele count: 4
allele frequency: 3.319777574902481e-5
allele num: 120490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.146C>G
  hgvsp: ENSP00000272789.4:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.146C>G
  hgvsp: ENSP00000306968.3:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.217C>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.146C>G
  hgvsp: ENSP00000376348.2:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.330C>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.146C>G
  hgvsp: ENSP00000386656.3:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3852C>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.146C>G
  hgvsp: ENSP00000390470.1:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.238C>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr49Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-174223569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223569
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223569
    reference: chr 2
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+4A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3857A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+4A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: c.147+4A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

2-174223579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223579
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223579
    reference: chr 2
allele count: 1
allele frequency: 8.331250520703158e-6
allele num: 120030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+14G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3867G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-174223590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223590
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223590
    reference: chr 2
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3878G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+25G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+25G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-174223598-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223598
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223598
    reference: chr 2
allele count: 1
allele frequency: 8.36344172353807e-6
allele num: 119568
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3886T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+33T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+33T>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

2-174223603-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223603
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223603
    reference: chr 2
allele count: 1
allele frequency: 8.371142995864656e-6
allele num: 119458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+38A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3891A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

2-174223616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223616
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223616
    reference: chr 2
allele count: 5
allele frequency: 4.209959079197751e-5
allele num: 118766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.147+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.147+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+51C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.21+3904C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.147+51C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-174223940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223940
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223940
    reference: chr 2
allele count: 1
allele frequency: 8.873114463176575e-6
allele num: 112700
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-43A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+375A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+375A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-175A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4014A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+375A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+375A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+375A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-131A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14513
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

2-174223940-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223940
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223938
    reference: chr 2
allele count: 1
allele frequency: 8.873114463176575e-6
allele num: 112700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+377_239+378delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+377_331+378delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+377_218+378delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-129_148-128delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-41_148-40delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+377_147+378delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-173_148-172delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+377_147+378delGA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4012_22-4011delGA
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15693
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14513
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: AAG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-174223942-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223941
    reference: chr 2
allele count: 36
allele frequency: 3.336979292189615e-4
allele num: 107882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+385delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4004delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+385delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-121delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+385delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+385delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+385delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-33delA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-165delA
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: GA
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-174223942-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223940
    reference: chr 2
allele count: 2
allele frequency: 1.853877384549786e-5
allele num: 107882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+384_147+385delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-34_148-33delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+384_147+385delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+384_218+385delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4005_22-4004delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+384_239+385delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-122_148-121delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+384_331+385delAA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-166_148-165delAA
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GAA
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-174223942-GAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223939
    reference: chr 2
allele count: 1
allele frequency: 9.269386922748929e-6
allele num: 107882
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13534
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 59150
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14146
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 9.379103357719002e-5
  allele num: 10662
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6386
  num of homozygotes: 0
population: African
population: East Asian
population: Other
reference allele: GAAA
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-174223949-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223949
    reference: chr 2
allele count: 1
allele frequency: 8.827683615819209e-6
allele num: 113280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+384A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-166A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+384A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+384A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+384A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4005A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+384A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-34A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-122A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-174223951-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223951
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223951
    reference: chr 2
allele count: 1
allele frequency: 8.823166104925091e-6
allele num: 113338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-4003T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-32T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-120T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+386T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-164T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+386T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+386T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+386T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+386T>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6073
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-174223957-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223957
    reference: chr 2
allele count: 1
allele frequency: 8.758868354208636e-6
allele num: 114170
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+392A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+392A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+392A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+392A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-158A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+392A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3997A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-26A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-114A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-174223960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223960
    reference: chr 2
allele count: 1
allele frequency: 8.724480893386843e-6
allele num: 114620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-23G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+395G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+395G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+395G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-111G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+395G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-155G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+395G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3994G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

2-174223960-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223960
    reference: chr 2
allele count: 1
allele frequency: 8.724480893386843e-6
allele num: 114620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3994G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+395G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+395G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-155G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-111G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+395G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+395G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-23G>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+395G>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-174223961-CATTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223961
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223957
    reference: chr 2
allele count: 2
allele frequency: 1.743527155435446e-5
allele num: 114710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+409_218+412delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-141_148-138delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+409_331+412delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3980_22-3977delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-97_148-94delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+409_147+412delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+409_147+412delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-9_148-6delATTT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+409_239+412delATTT
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 26161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6532
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: CATTT
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

2-174223971-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223971
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223971
    reference: chr 2
allele count: 1
allele frequency: 8.584722627611901e-6
allele num: 116486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+406T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-100T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+406T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+406T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+406T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-144T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+406T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3983T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.148-12T>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

2-174223986-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223986
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223986
    reference: chr 2
allele count: 3
allele frequency: 2.526103065005052e-5
allele num: 118760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+421C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+421C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-85C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+421C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+421C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3968C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.151C>T
  hgvsp: ENSP00000306968.3:p.Pro51Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-129C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+421C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro51Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

2-174223997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174223997
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174223997
    reference: chr 2
allele count: 2
allele frequency: 1.668891855807744e-5
allele num: 119840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+432G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3957G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+432G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+432G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-74G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+432G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-118G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.162G>A
  hgvsp: ENST00000306721.3:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+432G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg54Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-174224003-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224003
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224003
    reference: chr 2
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+438T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.168T>G
  hgvsp: ENSP00000306968.3:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3951T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+438T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+438T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-112T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+438T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-68T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+438T>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp56Glu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-174224007-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224007
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224007
    reference: chr 2
allele count: 2
allele frequency: 1.661764461505226e-5
allele num: 120354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+442A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-64A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-108A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+442A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+442A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3947A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+442A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.172A>G
  hgvsp: ENSP00000306968.3:p.Ser58Gly
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+442A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser58Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

2-174224017-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224017
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224017
    reference: chr 2
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+452T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.182T>A
  hgvsp: ENSP00000306968.3:p.Leu61Gln
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+452T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-54T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-98T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+452T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3937T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+452T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+452T>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu61Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

2-174224019-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224019
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224019
    reference: chr 2
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+454G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-52G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+454G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-96G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.184G>C
  hgvsp: ENSP00000306968.3:p.Ala62Pro
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+454G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+454G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+454G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3935G>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala62Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-174224024-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224024
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224024
    reference: chr 2
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+459T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-47T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+459T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+459T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.189T>C
  hgvsp: ENST00000306721.3:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-91T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3930T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+459T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+459T>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn63Asn
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-174224025-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224025
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224026
    reference: chr 2
allele count: 2
allele frequency: 1.654861984510492e-5
allele num: 120856
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+466dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+466dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.196dupT
  hgvsp: ENSP00000306968.3:p.Tyr66LeufsTer2
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+466dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+466dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-40dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3923dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-84dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+466dupT
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr66LeufsTer2
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

2-174224030-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224030
    reference: chr 2
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+465T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-85T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+465T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3924T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-41T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+465T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+465T>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.195T>C
  hgvsp: ENST00000306721.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+465T>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe65Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

2-174224048-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224048
    reference: chr 2
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+483T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+483T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.213T>A
  hgvsp: ENSP00000306968.3:p.Asn71Lys
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-67T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+483T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+483T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-23T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+483T>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3906T>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn71Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-174224060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224060
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224060
    reference: chr 2
allele count: 2
allele frequency: 1.650273945474949e-5
allele num: 121192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3894C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+495C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+495C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+495C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.225C>T
  hgvsp: ENST00000306721.3:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+495C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+495C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-11C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-55C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys75Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

2-174224067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224067
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224067
    reference: chr 2
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+502T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+502T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+502T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+502T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.232T>G
  hgvsp: ENSP00000306968.3:p.Ser78Ala
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.148-4T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+502T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-48T>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3887T>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7652
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser78Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

2-174224088-GTAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224088
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224085
    reference: chr 2
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+526_239+528delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3863_22-3861delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-24_148-22delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.256_258delTTA
  hgvsp: ENSP00000306968.3:p.Leu86del
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+526_147+528delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+526_331+528delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.168_170delTTA
  hgvsp: ENSP00000390470.1:p.Tyr56del
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+526_147+528delTTA
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+526_218+528delTTA
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu86del
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: GTAT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-174224094-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224094
    reference: chr 2
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.259G>C
  hgvsp: ENSP00000306968.3:p.Asp87His
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-21G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+529G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+529G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+529G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3860G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+529G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.171G>C
  hgvsp: ENSP00000390470.1:p.Ter57TyrextTer42
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+529G>C
  variant of: http://identifiers.org/hgnc/14628
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter57TyrextTer42
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-174224097-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224097
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224097
    reference: chr 2
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3857C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+532C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-18C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+532C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+532C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.262C>A
  hgvsp: ENSP00000306968.3:p.His88Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+532C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*3C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+532C>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His88Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

2-174224098-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224098
    reference: chr 2
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.148-17A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+533A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3856A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+533A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*4A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.263A>T
  hgvsp: ENSP00000306968.3:p.His88Leu
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+533A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+533A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+533A>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His88Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-174224119-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224119
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224119
    reference: chr 2
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+554C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+554C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.284C>A
  hgvsp: ENSP00000306968.3:p.Pro95Gln
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+554C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3835C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+554C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*25C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+554C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.152C>A
  hgvsp: ENSP00000386656.3:p.Pro51Gln
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7656
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro95Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-174224124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224124
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224124
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.289C>T
  hgvsp: ENSP00000306968.3:p.Pro97Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.157C>T
  hgvsp: ENSP00000386656.3:p.Pro53Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+559C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+559C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+559C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3830C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+559C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+559C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro97Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

2-174224132-CACTAACGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224132
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224124
    reference: chr 2
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*42_*49delAACGAACT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.301_308delAACGAACT
  hgvsp: ENSP00000306968.3:p.Asn101GlyfsTer9
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.169_176delAACGAACT
  hgvsp: ENSP00000386656.3:p.Asn57GlyfsTer9
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6294
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn101GlyfsTer9
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: CACTAACGA
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-174224134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224134
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224134
    reference: chr 2
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+569C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3820C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.167C>T
  hgvsp: ENSP00000386656.3:p.Thr56Ile
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+569C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+569C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.299C>T
  hgvsp: ENSP00000306968.3:p.Thr100Ile
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+569C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+569C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr100Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

2-174224138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224138
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224138
    reference: chr 2
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.171C>T
  hgvsp: ENST00000410101.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+573C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+573C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3816C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.303C>T
  hgvsp: ENST00000306721.3:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+573C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+573C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+573C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6296
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn101Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

2-174224139-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224139
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224139
    reference: chr 2
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+574G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+574G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.304G>A
  hgvsp: ENSP00000306968.3:p.Glu102Lys
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3815G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+574G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+574G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+574G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*45G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.172G>A
  hgvsp: ENSP00000386656.3:p.Glu58Lys
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu102Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-174224144-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224144
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224144
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+579G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.309G>C
  hgvsp: ENST00000306721.3:c.309G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+579G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+579G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.177G>C
  hgvsp: ENST00000410101.3:c.177G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+579G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*50G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+579G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3810G>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu103Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-174224147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224147
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224147
    reference: chr 2
allele count: 126
allele frequency: 1.037993870893334e-3
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*53C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+582C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.180C>T
  hgvsp: ENST00000410101.3:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3807C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+582C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+582C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.312C>T
  hgvsp: ENST00000306721.3:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+582C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+582C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala104Ala
num of homozygotes: 1
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-174224148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224148
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224148
    reference: chr 2
allele count: 8
allele frequency: 6.59043727551323e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.181G>A
  hgvsp: ENSP00000386656.3:p.Gly61Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+583G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3806G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+583G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*54G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+583G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+583G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.313G>A
  hgvsp: ENSP00000306968.3:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+583G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly105Ser
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-174224158-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224158
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224158
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.323A>G
  hgvsp: ENSP00000306968.3:p.His108Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.191A>G
  hgvsp: ENSP00000386656.3:p.His64Arg
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3796A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+593A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*64A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+593A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+593A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+593A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+593A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6336
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His108Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/2-174224161-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224161
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224161
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3793C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.326C>A
  hgvsp: ENSP00000306968.3:p.Ala109Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+596C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*67C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.194C>A
  hgvsp: ENSP00000386656.3:p.Ala65Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+596C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+596C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+596C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+596C>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala109Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-174224162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224162
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224162
    reference: chr 2
allele count: 11
allele frequency: 9.062000560196398e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.195C>T
  hgvsp: ENST00000410101.3:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.327C>T
  hgvsp: ENST00000306721.3:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+597C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+597C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3792C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+597C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+597C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+597C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala109Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

2-174224163-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224163
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224163
    reference: chr 2
allele count: 3
allele frequency: 2.471454698235381e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+598G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+598G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.328G>A
  hgvsp: ENSP00000306968.3:p.Asp110Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.196G>A
  hgvsp: ENSP00000386656.3:p.Asp66Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+598G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*69G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+598G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3791G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+598G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp110Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-174224167-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224167
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224168
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.333dupT
  hgvsp: ENSP00000306968.3:p.Asp112Ter
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+603dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+603dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3786dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+603dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.201dupT
  hgvsp: ENSP00000386656.3:p.Asp68Ter
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+603dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+603dupT
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*74dupT
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp112Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

2-174224171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224171
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224171
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.336C>T
  hgvsp: ENST00000306721.3:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3783C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+606C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+606C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+606C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.204C>T
  hgvsp: ENST00000410101.3:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+606C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+606C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*77C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32545
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp112Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

2-174224172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224172
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224172
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+607G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*78G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.205G>A
  hgvsp: ENSP00000386656.3:p.Asp69Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+607G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+607G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3782G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+607G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.337G>A
  hgvsp: ENSP00000306968.3:p.Asp113Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+607G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp113Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

2-174224177-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224177
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224177
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.210A>T
  hgvsp: ENSP00000386656.3:p.Glu70Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+612A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3777A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+612A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.342A>T
  hgvsp: ENSP00000306968.3:p.Glu114Asp
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+612A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+612A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*83A>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+612A>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu114Asp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

2-174224180-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224180
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224180
    reference: chr 2
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+615A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+615A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.345A>G
  hgvsp: ENST00000306721.3:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+615A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+615A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3774A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.213A>G
  hgvsp: ENST00000410101.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+615A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*86A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser115Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-174224186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224186
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.219C>T
  hgvsp: ENST00000410101.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+621C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+621C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+621C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+621C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+621C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.351C>T
  hgvsp: ENST00000306721.3:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3768C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys117Cys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-174224187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224187
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224187
    reference: chr 2
allele count: 3
allele frequency: 2.47137325974133e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.220G>A
  hgvsp: ENSP00000386656.3:p.Gly74Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+622G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.352G>A
  hgvsp: ENSP00000306968.3:p.Gly118Ser
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+622G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+622G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+622G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+622G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3767G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly118Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

2-174224200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224200
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.365G>A
  hgvsp: ENSP00000306968.3:p.Ser122Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+635G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.233G>A
  hgvsp: ENSP00000386656.3:p.Ser78Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+635G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+635G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*106G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3754G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+635G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+635G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser122Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

2-174224211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224211
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224211
    reference: chr 2
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.376G>A
  hgvsp: ENSP00000306968.3:p.Asp126Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+646G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.244G>A
  hgvsp: ENSP00000386656.3:p.Asp82Asn
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+646G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*117G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+646G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+646G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+646G>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3743G>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp126Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

2-174224215-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224215
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224215
    reference: chr 2
allele count: 17
allele frequency: 1.400906468891636e-4
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+650G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+650G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.380G>C
  hgvsp: ENSP00000306968.3:p.Gly127Ala
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+650G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+650G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.248G>C
  hgvsp: ENSP00000386656.3:p.Gly83Ala
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*121G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+650G>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3739G>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly127Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-174224227-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224227
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224227
    reference: chr 2
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+662C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+662C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.252+8C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3727C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.384+8C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+662C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+662C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*125+8C>A
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+662C>A
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: c.384+8C>A
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

2-174224227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224227
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224227
    reference: chr 2
allele count: 12
allele frequency: 9.894132779261898e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+662C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.384+8C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3727C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+662C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+662C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+662C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+662C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*125+8C>T
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.252+8C>T
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.384+8C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

2-174224249-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224249
    reference: chr 2
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+684A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+684A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.252+30A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*125+30A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3705A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+684A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+684A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.384+30A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+684A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

2-174224260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224260
    reference: chr 2
allele count: 2
allele frequency: 1.655272871732905e-5
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+695A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3694A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+695A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+695A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.384+41A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.252+41A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+695A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+695A>G
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*125+41A>G
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-174224266-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 174224266
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 174224266
    reference: chr 2
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386656
  ensembl transcript: ENST00000410101
  gene symbol: CDCA7
  hgvsc: ENST00000410101.3:c.252+47A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000468359
  gene symbol: CDCA7
  hgvsc: ENST00000468359.1:n.331+701A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000376348
  ensembl transcript: ENST00000392567
  gene symbol: CDCA7
  hgvsc: ENST00000392567.2:c.147+701A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000272789
  ensembl transcript: ENST00000347703
  gene symbol: CDCA7
  hgvsc: ENST00000347703.3:c.147+701A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000496441
  gene symbol: CDCA7
  hgvsc: ENST00000496441.1:n.239+701A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000306968
  ensembl transcript: ENST00000306721
  gene symbol: CDCA7
  hgvsc: ENST00000306721.3:c.384+47A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000390470
  ensembl transcript: ENST00000435616
  gene symbol: CDCA7
  hgvsc: ENST00000435616.1:c.*125+47A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl protein: ENSP00000386833
  ensembl transcript: ENST00000410019
  gene symbol: CDCA7
  hgvsc: ENST00000410019.3:c.22-3688A>C
  variant of: http://identifiers.org/hgnc/14628
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144354
  ensembl transcript: ENST00000467411
  gene symbol: CDCA7
  hgvsc: ENST00000467411.1:n.218+701A>C
  variant of: http://identifiers.org/hgnc/14628
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6362
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4861
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4072
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6869
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21921482565228e-4
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.818e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.958622e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.404e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 1999
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.958167e6

FS
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.958221e6

FS
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.6563e1

DP
type: SiteQuality
SIO_000300: 1.958077e6

VQSLOD
type: SiteQuality
SIO_000300: -7.434e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501800720288115e-5
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 1.955457e6

QD
type: SiteQuality
SIO_000300: 1.364e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 16180
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.013771536819316e-5
allele num: 66514
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.34437254155564e-5
allele num: 15762
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.636e0

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 3.166e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.926561e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

GenotypeQuality
all individuals: 4827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6613
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.667e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.223e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.9173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.062e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.758e0

GenotypeQuality
all individuals: 6577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.789e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.783e0

DP
type: SiteQuality
SIO_000300: 1.9112e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQ
type: SiteQuality
SIO_000300: 5.826e1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 2840
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 770
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 737
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 6566
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14259
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variant carriers: 1

GenotypeQuality
all individuals: 2002
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508386629660915e-5
allele num: 66296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.199e0

FS
type: SiteQuality
SIO_000300: 1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.591e0

DP
type: SiteQuality
SIO_000300: 1.90932e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.424e1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e-1

GenotypeQuality
all individuals: 4846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16482
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variant carriers: 0

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1045
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.558350465594389e-5
allele num: 66152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 2.383e0

DP
type: SiteQuality
SIO_000300: 1.909103e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.723e0

GenotypeQuality
all individuals: 5008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617599482368166e-5
allele num: 61820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15074
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

DP
type: SiteQuality
SIO_000300: 1.409157e6

MQ
type: SiteQuality
SIO_000300: 6.213e1

FS
type: SiteQuality
SIO_000300: 3.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 2237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617599482368166e-5
allele num: 61820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.409157e6

FS
type: SiteQuality
SIO_000300: 3.123e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.195e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 6.213e1

GenotypeQuality
all individuals: 834
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 805
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1986
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2580
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4261
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13534
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5881
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 1526
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 19
allele frequency: 1.78202963796661e-3
allele num: 10662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.277139208173691e-4
allele num: 7830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.069136151562279e-5
allele num: 14146
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.25123818099955e-4
allele num: 8884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.197802197802198e-4
allele num: 59150
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.436622e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

FS
type: SiteQuality
SIO_000300: 1.679e0

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
all individuals: 821
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4362
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5881
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 912
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.125619090499775e-4
allele num: 8884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.69061707523246e-5
allele num: 59150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.436622e6

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

QD
type: SiteQuality
SIO_000300: 4.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.679e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

FS
type: SiteQuality
SIO_000300: 1.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.436622e6

QD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.56254101588135e-5
allele num: 15238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.51e1

DP
type: SiteQuality
SIO_000300: 1.48026e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609476598210262e-5
allele num: 62132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 2.556e0

DP
type: SiteQuality
SIO_000300: 1.493053e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.784e1

VQSLOD
type: SiteQuality
SIO_000300: -2.437e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 25542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.218323586744639e-4
allele num: 8208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9206
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

FS
type: SiteQuality
SIO_000300: 3.116e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 1.538224e6

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 6125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592813226721035e-5
allele num: 62782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 1.564263e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.98e0

GenotypeQuality
all individuals: 362
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6125
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variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.215362177929023e-4
allele num: 8228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62782
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 7.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

FS
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.564263e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1073
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.180256964762753e-5
allele num: 62888
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.3e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 9.349e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.220452848967405e-5
allele num: 16076
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6241
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 31383
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.590525156077855e-5
allele num: 65352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.494e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

DP
type: SiteQuality
SIO_000300: 1.65436e6

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 9.19e0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6253
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029752166272799e-5
allele num: 66012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.593e0

FS
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 1.668454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 9.4e0

VQSLOD
type: SiteQuality
SIO_000300: -5.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7500
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GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.049e0

DP
type: SiteQuality
SIO_000300: 1.672853e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.952e0

MQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -3.016e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 7521
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

FS
type: SiteQuality
SIO_000300: 9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

DP
type: SiteQuality
SIO_000300: 1.675292e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

FS
type: SiteQuality
SIO_000300: 3.99e0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 1.67999e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.244e1

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.736e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.817e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 1.681284e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.155e0

VQSLOD
type: SiteQuality
SIO_000300: -6.101e-1

DP
type: SiteQuality
SIO_000300: 1.682635e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.683e0

FS
type: SiteQuality
SIO_000300: 9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.71e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1712
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.683049e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

FS
type: SiteQuality
SIO_000300: 1.277e0

QD
type: SiteQuality
SIO_000300: 9.67e0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
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GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1714
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variant carriers: 0

GenotypeQuality
all individuals: 228
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6279
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.683949e6

FS
type: SiteQuality
SIO_000300: 4.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 32423
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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FS
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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SIO_000300: 1.687154e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
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Other
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allele num: 904
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African
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allele count: 2
allele frequency: 1.957330201605011e-4
allele num: 10218
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South Asian
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 2.311604253351826e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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VQSLOD
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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African
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
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South Asian
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ClippingRankSum
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SIO_000300: 1.05e0

InbreedingCoeff
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FS
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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DP
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SIO_000300: 1.689988e6

InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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East Asian
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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Latino
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European (Non-Finnish)
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South Asian
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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BaseQRankSum
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QD
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MQ
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FS
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DP
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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African
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Latino
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East Asian
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InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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allele num: 10388
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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FS
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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African
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East Asian
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Latino
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

East Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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MQ
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQ
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DP
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FS
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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Latino
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East Asian
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.693584e6

VQSLOD
type: SiteQuality
SIO_000300: -7.367e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.252e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.493e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.694116e6

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

BaseQRankSum
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SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.46e-1

DP
type: SiteQuality
SIO_000300: 1.693945e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.693814e6

FS
type: SiteQuality
SIO_000300: 2.787e0

MQ
type: SiteQuality
SIO_000300: 5.994e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.859e0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.272e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

QD
type: SiteQuality
SIO_000300: 6.71e0

FS
type: SiteQuality
SIO_000300: 3.457e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.693861e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 9.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
SIO_000300: 1.223e1

VQSLOD
type: SiteQuality
SIO_000300: 9.419999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.57e-1

DP
type: SiteQuality
SIO_000300: 1.693899e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.5887e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7667
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.184e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 1.694027e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: -2.301e0

FS
type: SiteQuality
SIO_000300: 3.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.442e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.694216e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.546e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.932e0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.693994e6

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

FS
type: SiteQuality
SIO_000300: 4.292e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.843e0

DP
type: SiteQuality
SIO_000300: 1.693614e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 1.159e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.639028152718858e-3
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.3e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 1.694243e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.22e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.250151791135398e-4
allele num: 16470
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.0e-4

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.678888e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.665721e6