3-129195574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195574
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.759C>T
  hgvsp: ENST00000504021.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.450C>T
  hgvsp: ENST00000440957.2:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*985C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.556C>T
  hgvsp: ENST00000515783.1:c.556C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.744C>T
  hgvsp: ENST00000349441.2:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1053C>T
  hgvsp: ENST00000507564.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1230C>T
  hgvsp: ENST00000296266.3:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.900C>T
  hgvsp: ENST00000347300.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.437C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1077C>T
  hgvsp: ENST00000348417.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.627C>T
  hgvsp: ENST00000431818.2:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.712C>T
  hgvsp: ENST00000512157.1:c.712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.860C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr410Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

3-129195581-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195581
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195581
    reference: chr 3
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*992C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.457C>G
  hgvsp: ENSP00000401569.2:p.Arg153Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1060C>G
  hgvsp: ENSP00000425536.1:p.Arg354Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.751C>G
  hgvsp: ENSP00000324165.3:p.Arg251Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.719C>G
  hgvsp: ENSP00000424206.1:p.Arg241Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.867C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.766C>G
  hgvsp: ENSP00000422179.1:p.Arg256Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.563C>G
  hgvsp: ENSP00000423288.1:p.Arg189Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.907C>G
  hgvsp: ENSP00000323973.3:p.Arg303Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.634C>G
  hgvsp: ENSP00000410946.2:p.Arg212Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.444C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1084C>G
  hgvsp: ENSP00000324005.3:p.Arg362Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1237C>G
  hgvsp: ENSP00000296266.3:p.Arg413Gly
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg413Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

3-129195581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195581
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195581
    reference: chr 3
allele count: 6
allele frequency: 4.942420797706717e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*992C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.634C>T
  hgvsp: ENSP00000410946.2:p.Arg212Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.719C>T
  hgvsp: ENSP00000424206.1:p.Arg241Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.563C>T
  hgvsp: ENSP00000423288.1:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.766C>T
  hgvsp: ENSP00000422179.1:p.Arg256Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.751C>T
  hgvsp: ENSP00000324165.3:p.Arg251Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1237C>T
  hgvsp: ENSP00000296266.3:p.Arg413Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1060C>T
  hgvsp: ENSP00000425536.1:p.Arg354Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.907C>T
  hgvsp: ENSP00000323973.3:p.Arg303Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.457C>T
  hgvsp: ENSP00000401569.2:p.Arg153Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1084C>T
  hgvsp: ENSP00000324005.3:p.Arg362Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.444C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.867C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg413Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-129195582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195582
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195582
    reference: chr 3
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.908G>A
  hgvsp: ENSP00000323973.3:p.Arg303His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.767G>A
  hgvsp: ENSP00000422179.1:p.Arg256His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1238G>A
  hgvsp: ENSP00000296266.3:p.Arg413His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*993G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.720G>A
  hgvsp: ENSP00000424206.1:p.Arg241His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.458G>A
  hgvsp: ENSP00000401569.2:p.Arg153His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1085G>A
  hgvsp: ENSP00000324005.3:p.Arg362His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1061G>A
  hgvsp: ENSP00000425536.1:p.Arg354His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.445G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.635G>A
  hgvsp: ENSP00000410946.2:p.Arg212His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.564G>A
  hgvsp: ENSP00000423288.1:p.Arg189His
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.868G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.752G>A
  hgvsp: ENSP00000324165.3:p.Arg251His
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg413His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

3-129195582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195582
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195582
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.564G>T
  hgvsp: ENSP00000423288.1:p.Arg189Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1238G>T
  hgvsp: ENSP00000296266.3:p.Arg413Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.767G>T
  hgvsp: ENSP00000422179.1:p.Arg256Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.908G>T
  hgvsp: ENSP00000323973.3:p.Arg303Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.720G>T
  hgvsp: ENSP00000424206.1:p.Arg241Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.635G>T
  hgvsp: ENSP00000410946.2:p.Arg212Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.868G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.752G>T
  hgvsp: ENSP00000324165.3:p.Arg251Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.445G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1061G>T
  hgvsp: ENSP00000425536.1:p.Arg354Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1085G>T
  hgvsp: ENSP00000324005.3:p.Arg362Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.458G>T
  hgvsp: ENSP00000401569.2:p.Arg153Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*993G>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg413Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

3-129195589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195589
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195589
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.875C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.571C>T
  hgvsp: ENST00000515783.1:c.571C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.465C>T
  hgvsp: ENST00000440957.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000424206
  ensembl transcript: ENST00000512157
  gene symbol: IFT122
  hgvsc: ENST00000512157.1:c.727C>T
  hgvsp: ENST00000512157.1:c.727C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.452C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.915C>T
  hgvsp: ENST00000347300.2:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1092C>T
  hgvsp: ENST00000348417.2:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.642C>T
  hgvsp: ENST00000431818.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1068C>T
  hgvsp: ENST00000507564.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.759C>T
  hgvsp: ENST00000349441.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1000C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1245C>T
  hgvsp: ENST00000296266.3:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.774C>T
  hgvsp: ENST00000504021.1:c.774C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala415Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-129195600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195600
    reference: chr 3
allele count: 390
allele frequency: 3.213155813340364e-3
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.926G>A
  hgvsp: ENSP00000323973.3:p.Ser309Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.785G>A
  hgvsp: ENSP00000422179.1:p.Ser262Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.886G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.476G>A
  hgvsp: ENSP00000401569.2:p.Ser159Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.770G>A
  hgvsp: ENSP00000324165.3:p.Ser257Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.463G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1079G>A
  hgvsp: ENSP00000425536.1:p.Ser360Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1256G>A
  hgvsp: ENSP00000296266.3:p.Ser419Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1103G>A
  hgvsp: ENSP00000324005.3:p.Ser368Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1011G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.582G>A
  hgvsp: ENSP00000423288.1:p.Ser195Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.653G>A
  hgvsp: ENSP00000410946.2:p.Ser218Asn
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
hgvs: p.Ser419Asn
num of homozygotes: 5
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-129195609-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195609
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195609
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1112A>G
  hgvsp: ENSP00000324005.3:p.Asp371Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1020A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.591A>G
  hgvsp: ENSP00000423288.1:p.Asp198Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1088A>G
  hgvsp: ENSP00000425536.1:p.Asp363Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.794A>G
  hgvsp: ENSP00000422179.1:p.Asp265Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1265A>G
  hgvsp: ENSP00000296266.3:p.Asp422Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.485A>G
  hgvsp: ENSP00000401569.2:p.Asp162Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.472A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.779A>G
  hgvsp: ENSP00000324165.3:p.Asp260Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.662A>G
  hgvsp: ENSP00000410946.2:p.Asp221Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.935A>G
  hgvsp: ENSP00000323973.3:p.Asp312Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.895A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp422Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-129195610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195610
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195610
    reference: chr 3
allele count: 146
allele frequency: 1.203052126765438e-3
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.795C>T
  hgvsp: ENST00000504021.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.896C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.473C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.663C>T
  hgvsp: ENST00000431818.2:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.936C>T
  hgvsp: ENST00000347300.2:c.936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.592C>T
  hgvsp: ENST00000515783.1:c.592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.780C>T
  hgvsp: ENST00000349441.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1266C>T
  hgvsp: ENST00000296266.3:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1089C>T
  hgvsp: ENST00000507564.1:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1113C>T
  hgvsp: ENST00000348417.2:c.1113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.486C>T
  hgvsp: ENST00000440957.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1021C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: p.Asp422Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-129195611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195611
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195611
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1022G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.937G>A
  hgvsp: ENSP00000323973.3:p.Val313Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1267G>A
  hgvsp: ENSP00000296266.3:p.Val423Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1090G>A
  hgvsp: ENSP00000425536.1:p.Val364Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.796G>A
  hgvsp: ENSP00000422179.1:p.Val266Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.474G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.487G>A
  hgvsp: ENSP00000401569.2:p.Val163Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.781G>A
  hgvsp: ENSP00000324165.3:p.Val261Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.664G>A
  hgvsp: ENSP00000410946.2:p.Val222Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.897G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.593G>A
  hgvsp: ENSP00000423288.1:p.Val199Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1114G>A
  hgvsp: ENSP00000324005.3:p.Val372Ile
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val423Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-129195613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195613
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195613
    reference: chr 3
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.666C>T
  hgvsp: ENST00000431818.2:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1116C>T
  hgvsp: ENST00000348417.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1092C>T
  hgvsp: ENST00000507564.1:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.939C>T
  hgvsp: ENST00000347300.2:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.899C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.595C>T
  hgvsp: ENST00000515783.1:c.595C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.489C>T
  hgvsp: ENST00000440957.2:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.798C>T
  hgvsp: ENST00000504021.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.783C>T
  hgvsp: ENST00000349441.2:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.476C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1269C>T
  hgvsp: ENST00000296266.3:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1024C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val423Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-129195626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195626
    reference: chr 3
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1105C>T
  hgvsp: ENST00000507564.1:c.1105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.608C>T
  hgvsp: ENST00000515783.1:c.608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1282C>T
  hgvsp: ENST00000296266.3:c.1282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1037C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1129C>T
  hgvsp: ENST00000348417.2:c.1129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.679C>T
  hgvsp: ENST00000431818.2:c.679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.502C>T
  hgvsp: ENST00000440957.2:c.502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.489C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.796C>T
  hgvsp: ENST00000349441.2:c.796C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.952C>T
  hgvsp: ENST00000347300.2:c.952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.912C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.811C>T
  hgvsp: ENST00000504021.1:c.811C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu428Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-129195632-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195632
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195631
    reference: chr 3
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1136delC
  hgvsp: ENSP00000324005.3:p.Thr379MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1112delC
  hgvsp: ENSP00000425536.1:p.Thr371MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.496delC
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1289delC
  hgvsp: ENSP00000296266.3:p.Thr430MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.686delC
  hgvsp: ENSP00000410946.2:p.Thr229MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.959delC
  hgvsp: ENSP00000323973.3:p.Thr320MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.803delC
  hgvsp: ENSP00000324165.3:p.Thr268MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.919delC
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1044delC
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.818delC
  hgvsp: ENSP00000422179.1:p.Thr273MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.615delC
  hgvsp: ENSP00000423288.1:p.Thr206MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.509delC
  hgvsp: ENSP00000401569.2:p.Thr170MetfsTer48
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr430MetfsTer48
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AC
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-129195636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195636
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195636
    reference: chr 3
allele count: 20
allele frequency: 1.649430121892886e-4
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1292A>G
  hgvsp: ENSP00000296266.3:p.Glu431Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.821A>G
  hgvsp: ENSP00000422179.1:p.Glu274Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.689A>G
  hgvsp: ENSP00000410946.2:p.Glu230Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.618A>G
  hgvsp: ENSP00000423288.1:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.962A>G
  hgvsp: ENSP00000323973.3:p.Glu321Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.499A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1115A>G
  hgvsp: ENSP00000425536.1:p.Glu372Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.512A>G
  hgvsp: ENSP00000401569.2:p.Glu171Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.806A>G
  hgvsp: ENSP00000324165.3:p.Glu269Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.922A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1047A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1139A>G
  hgvsp: ENSP00000324005.3:p.Glu380Gly
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu431Gly
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-129195643-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195643
    reference: chr 3
allele count: 4
allele frequency: 3.30016665841625e-5
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1146A>G
  hgvsp: ENST00000348417.2:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1054A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.929A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.625A>G
  hgvsp: ENST00000515783.1:c.625A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.506A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1122A>G
  hgvsp: ENST00000507564.1:c.1122A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1299A>G
  hgvsp: ENST00000296266.3:c.1299A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.696A>G
  hgvsp: ENST00000431818.2:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.828A>G
  hgvsp: ENST00000504021.1:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.519A>G
  hgvsp: ENST00000440957.2:c.519A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.813A>G
  hgvsp: ENST00000349441.2:c.813A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.969A>G
  hgvsp: ENST00000347300.2:c.969A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1299A>G
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-129195643-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195642
    reference: chr 3
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+1delG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+1delG
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: AG
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-129195644-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195645
    reference: chr 3
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930_930+1insT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300_1300+1insT
  hgvsp: ENSP00000296266.3:p.Arg435SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697_697+1insT
  hgvsp: ENSP00000410946.2:p.Arg234SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970_970+1insT
  hgvsp: ENSP00000323973.3:p.Arg325SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147_1147+1insT
  hgvsp: ENSP00000324005.3:p.Arg384SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055_*1055+1insT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814_814+1insT
  hgvsp: ENSP00000324165.3:p.Arg273SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520_520+1insT
  hgvsp: ENSP00000401569.2:p.Arg175SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123_1123+1insT
  hgvsp: ENSP00000425536.1:p.Arg376SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829_829+1insT
  hgvsp: ENSP00000422179.1:p.Arg278SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507_507+1insT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626_626+1insT
  hgvsp: ENSP00000423288.1:p.Arg211SerfsTer3
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg435SerfsTer3
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-129195645-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195645
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195645
    reference: chr 3
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+1G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+1G>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1300+1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-129195652-GCAGGTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195652
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195646
    reference: chr 3
allele count: 2
allele frequency: 1.651391297167864e-5
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+12_814+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+12_970+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+12_829+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+12_626+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+12_1147+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+12_520+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+12_930+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+12_1123+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+12_697+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+12_*1055+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+12_1300+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+12_507+17delGTCCAG
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: GCAGGTC
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-129195662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195662
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195662
    reference: chr 3
allele count: 3
allele frequency: 2.479666732791113e-5
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+18A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+18A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-129195663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195663
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195663
    reference: chr 3
allele count: 9738
allele frequency: 8.050994592985763e-2
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+19C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+19C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 4.75e1
  variant carriers: 1008
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 2.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 3.75e1
  variant carriers: 817
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 936
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.75e1
  variant carriers: 416
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 3.25e1
  variant carriers: 669
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 4.25e1
  variant carriers: 1029
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 9.75e1
  variant carriers: 1203
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 8.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 7.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 5.75e1
  variant carriers: 744
genotype quality: GenotypeQuality
num of homozygotes: 580
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

3-129195669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195669
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195669
    reference: chr 3
allele count: 2
allele frequency: 1.654998924250699e-5
allele num: 120846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+25G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+25G>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-129195676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195676
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195676
    reference: chr 3
allele count: 382
allele frequency: 3.165028916101877e-3
allele num: 120694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+32G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+32G>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 4.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 7
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

3-129195677-ACAGGTGGAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195667
    reference: chr 3
allele count: 160
allele frequency: 1.324744572687079e-3
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: ACAGGTGGAAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

3-129195678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195678
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195678
    reference: chr 3
allele count: 8
allele frequency: 6.661004812575977e-5
allele num: 120102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+34C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+34C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

3-129195683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195683
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195683
    reference: chr 3
allele count: 4
allele frequency: 3.328617791462096e-5
allele num: 120170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+39G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+39G>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

3-129195692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129195692
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129195692
    reference: chr 3
allele count: 1
allele frequency: 8.308822307526131e-6
allele num: 120354
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1300+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.507+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.930+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.697+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1123+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.829+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.814+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.520+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1055+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1147+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.626+48T>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.970+48T>C
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-129196810-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196810
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196810
    reference: chr 3
allele count: 4
allele frequency: 3.378207185446684e-5
allele num: 118406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-49C>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-49C>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15244
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-129196814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196814
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196814
    reference: chr 3
allele count: 2
allele frequency: 1.688362119907478e-5
allele num: 118458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-45A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-45A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16122
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

3-129196816-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196816
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196816
    reference: chr 3
allele count: 5
allele frequency: 4.217772004116546e-5
allele num: 118546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-43A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-43A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16983
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15526
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

3-129196818-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196818
    reference: chr 3
allele count: 2
allele frequency: 1.68713726548792e-5
allele num: 118544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-41A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-41A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17818
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-129196835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196835
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196835
    reference: chr 3
allele count: 2
allele frequency: 1.680361613819294e-5
allele num: 119022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-24A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-24A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-129196836-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196836
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196836
    reference: chr 3
allele count: 68
allele frequency: 5.710734501234527e-4
allele num: 119074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-23C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-23C>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16993
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 22767
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-129196842-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196842
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196842
    reference: chr 3
allele count: 4
allele frequency: 3.353847701775862e-5
allele num: 119266
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-17A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-17A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-129196850-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196850
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196850
    reference: chr 3
allele count: 1
allele frequency: 8.356313194618534e-6
allele num: 119670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-9C>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-9C>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-129196850-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196850
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196851
    reference: chr 3
allele count: 2
allele frequency: 1.671262638923707e-5
allele num: 119670
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-6dupT
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-6dupT
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-129196858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196858
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196858
    reference: chr 3
allele count: 2
allele frequency: 1.663450662053363e-5
allele num: 120232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1124-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.508-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.830-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1148-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.698-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.627-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1056-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.971-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.815-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.521-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1301-1G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.931-1G>C
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1301-1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

3-129196861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196861
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196861
    reference: chr 3
allele count: 6
allele frequency: 4.985790497083313e-5
allele num: 120342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.510C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.629C>T
  hgvsp: ENSP00000423288.1:p.Arg211Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1150C>T
  hgvsp: ENSP00000324005.3:p.Arg384Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1126C>T
  hgvsp: ENSP00000425536.1:p.Arg376Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.933C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1303C>T
  hgvsp: ENSP00000296266.3:p.Arg435Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.832C>T
  hgvsp: ENSP00000422179.1:p.Arg278Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.817C>T
  hgvsp: ENSP00000324165.3:p.Arg273Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.523C>T
  hgvsp: ENSP00000401569.2:p.Arg175Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1058C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.700C>T
  hgvsp: ENSP00000410946.2:p.Arg234Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.973C>T
  hgvsp: ENSP00000323973.3:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg435Trp
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-129196862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196862
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196862
    reference: chr 3
allele count: 2
allele frequency: 1.660660610790973e-5
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.833G>A
  hgvsp: ENSP00000422179.1:p.Arg278Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.630G>A
  hgvsp: ENSP00000423288.1:p.Arg211Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1059G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.818G>A
  hgvsp: ENSP00000324165.3:p.Arg273Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1151G>A
  hgvsp: ENSP00000324005.3:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1127G>A
  hgvsp: ENSP00000425536.1:p.Arg376Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1304G>A
  hgvsp: ENSP00000296266.3:p.Arg435Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.701G>A
  hgvsp: ENSP00000410946.2:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.511G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.524G>A
  hgvsp: ENSP00000401569.2:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.934G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.974G>A
  hgvsp: ENSP00000323973.3:p.Arg325Gln
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg435Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-129196874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196874
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196874
    reference: chr 3
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.713A>G
  hgvsp: ENSP00000410946.2:p.Lys238Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.523A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.642A>G
  hgvsp: ENSP00000423288.1:p.Lys215Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1139A>G
  hgvsp: ENSP00000425536.1:p.Lys380Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.845A>G
  hgvsp: ENSP00000422179.1:p.Lys282Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1316A>G
  hgvsp: ENSP00000296266.3:p.Lys439Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.830A>G
  hgvsp: ENSP00000324165.3:p.Lys277Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1163A>G
  hgvsp: ENSP00000324005.3:p.Lys388Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1071A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.986A>G
  hgvsp: ENSP00000323973.3:p.Lys329Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.946A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.536A>G
  hgvsp: ENSP00000401569.2:p.Lys179Arg
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys439Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

3-129196882-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196882
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196882
    reference: chr 3
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.954G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.853G>C
  hgvsp: ENSP00000422179.1:p.Val285Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.721G>C
  hgvsp: ENSP00000410946.2:p.Val241Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.544G>C
  hgvsp: ENSP00000401569.2:p.Val182Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.994G>C
  hgvsp: ENSP00000323973.3:p.Val332Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.838G>C
  hgvsp: ENSP00000324165.3:p.Val280Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.650G>C
  hgvsp: ENSP00000423288.1:p.Val218Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1324G>C
  hgvsp: ENSP00000296266.3:p.Val442Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1079G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.531G>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1147G>C
  hgvsp: ENSP00000425536.1:p.Val383Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1171G>C
  hgvsp: ENSP00000324005.3:p.Val391Leu
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val442Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-129196885-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196885
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196885
    reference: chr 3
allele count: 2
allele frequency: 1.652837922713299e-5
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.653A>C
  hgvsp: ENSP00000423288.1:p.Lys219Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.841A>C
  hgvsp: ENSP00000324165.3:p.Lys281Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.724A>C
  hgvsp: ENSP00000410946.2:p.Lys242Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1082A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.997A>C
  hgvsp: ENSP00000323973.3:p.Lys333Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.957A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.534A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.856A>C
  hgvsp: ENSP00000422179.1:p.Lys286Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1150A>C
  hgvsp: ENSP00000425536.1:p.Lys384Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1327A>C
  hgvsp: ENSP00000296266.3:p.Lys443Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.547A>C
  hgvsp: ENSP00000401569.2:p.Lys183Gln
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1174A>C
  hgvsp: ENSP00000324005.3:p.Lys392Gln
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys443Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-129196894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196894
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196894
    reference: chr 3
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1336G>A
  hgvsp: ENSP00000296266.3:p.Ala446Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.662G>A
  hgvsp: ENSP00000423288.1:p.Ala222Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1091G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1183G>A
  hgvsp: ENSP00000324005.3:p.Ala395Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.543G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.733G>A
  hgvsp: ENSP00000410946.2:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1159G>A
  hgvsp: ENSP00000425536.1:p.Ala387Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1006G>A
  hgvsp: ENSP00000323973.3:p.Ala336Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.865G>A
  hgvsp: ENSP00000422179.1:p.Ala289Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.556G>A
  hgvsp: ENSP00000401569.2:p.Ala186Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.850G>A
  hgvsp: ENSP00000324165.3:p.Ala284Thr
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.966G>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala446Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-129196902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196902
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196902
    reference: chr 3
allele count: 2
allele frequency: 1.651418568550385e-5
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1344C>T
  hgvsp: ENST00000296266.3:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.551C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.741C>T
  hgvsp: ENST00000431818.2:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.974C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.858C>T
  hgvsp: ENST00000349441.2:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1167C>T
  hgvsp: ENST00000507564.1:c.1167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1099C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.873C>T
  hgvsp: ENST00000504021.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1014C>T
  hgvsp: ENST00000347300.2:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.670C>T
  hgvsp: ENST00000515783.1:c.670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.564C>T
  hgvsp: ENST00000440957.2:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1191C>T
  hgvsp: ENST00000348417.2:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr448Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

3-129196909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196909
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196909
    reference: chr 3
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.865C>T
  hgvsp: ENSP00000324165.3:p.Arg289Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1351C>T
  hgvsp: ENSP00000296266.3:p.Arg451Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1174C>T
  hgvsp: ENSP00000425536.1:p.Arg392Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.748C>T
  hgvsp: ENSP00000410946.2:p.Arg250Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.880C>T
  hgvsp: ENSP00000422179.1:p.Arg294Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.571C>T
  hgvsp: ENSP00000401569.2:p.Arg191Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.981C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1021C>T
  hgvsp: ENSP00000323973.3:p.Arg341Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1106C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.677C>T
  hgvsp: ENSP00000423288.1:p.Arg227Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1198C>T
  hgvsp: ENSP00000324005.3:p.Arg400Ter
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000508654
  gene symbol: IFT122
  hgvsc: ENST00000508654.1:n.558C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg451Ter
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-129196918-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196918
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196918
    reference: chr 3
allele count: 10
allele frequency: 8.252050634582694e-5
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1030A>C
  hgvsp: ENSP00000323973.3:p.Ile344Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.580A>C
  hgvsp: ENSP00000401569.2:p.Ile194Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.990A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.874A>C
  hgvsp: ENSP00000324165.3:p.Ile292Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1360A>C
  hgvsp: ENSP00000296266.3:p.Ile454Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.686A>C
  hgvsp: ENSP00000423288.1:p.Ile230Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1207A>C
  hgvsp: ENSP00000324005.3:p.Ile403Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1115A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.889A>C
  hgvsp: ENSP00000422179.1:p.Ile297Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.757A>C
  hgvsp: ENSP00000410946.2:p.Ile253Leu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1183A>C
  hgvsp: ENSP00000425536.1:p.Ile395Leu
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile454Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-129196923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196923
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196923
    reference: chr 3
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1035A>G
  hgvsp: ENST00000347300.2:c.1035A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.691A>G
  hgvsp: ENST00000515783.1:c.691A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1365A>G
  hgvsp: ENST00000296266.3:c.1365A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1120A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.762A>G
  hgvsp: ENST00000431818.2:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.894A>G
  hgvsp: ENST00000504021.1:c.894A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1212A>G
  hgvsp: ENST00000348417.2:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1188A>G
  hgvsp: ENST00000507564.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.879A>G
  hgvsp: ENST00000349441.2:c.879A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.585A>G
  hgvsp: ENST00000440957.2:c.585A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.995A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln455Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-129196925-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196925
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196925
    reference: chr 3
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1122T>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.764T>G
  hgvsp: ENSP00000410946.2:p.Leu255Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.896T>G
  hgvsp: ENSP00000422179.1:p.Leu299Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1214T>G
  hgvsp: ENSP00000324005.3:p.Leu405Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1190T>G
  hgvsp: ENSP00000425536.1:p.Leu397Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.881T>G
  hgvsp: ENSP00000324165.3:p.Leu294Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.693T>G
  hgvsp: ENSP00000423288.1:p.Leu232Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.997T>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.587T>G
  hgvsp: ENSP00000401569.2:p.Leu196Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1367T>G
  hgvsp: ENSP00000296266.3:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1037T>G
  hgvsp: ENSP00000323973.3:p.Leu346Arg
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu456Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

3-129196938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196938
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196938
    reference: chr 3
allele count: 11
allele frequency: 9.072464246243175e-5
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.909C>T
  hgvsp: ENST00000504021.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1050C>T
  hgvsp: ENST00000347300.2:c.1050C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1380C>T
  hgvsp: ENST00000296266.3:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.894C>T
  hgvsp: ENST00000349441.2:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1227C>T
  hgvsp: ENST00000348417.2:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.706C>T
  hgvsp: ENST00000515783.1:c.706C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.777C>T
  hgvsp: ENST00000431818.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1203C>T
  hgvsp: ENST00000507564.1:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.600C>T
  hgvsp: ENST00000440957.2:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1135C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1010C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ile460Ile
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

3-129196946-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196946
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196946
    reference: chr 3
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1143A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.902A>G
  hgvsp: ENSP00000324165.3:p.Tyr301Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.785A>G
  hgvsp: ENSP00000410946.2:p.Tyr262Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1211A>G
  hgvsp: ENSP00000425536.1:p.Tyr404Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.917A>G
  hgvsp: ENSP00000422179.1:p.Tyr306Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1018A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.714A>G
  hgvsp: ENSP00000423288.1:p.Tyr239Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1235A>G
  hgvsp: ENSP00000324005.3:p.Tyr412Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1388A>G
  hgvsp: ENSP00000296266.3:p.Tyr463Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1058A>G
  hgvsp: ENSP00000323973.3:p.Tyr353Cys
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.608A>G
  hgvsp: ENSP00000401569.2:p.Tyr203Cys
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr463Cys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-129196950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196950
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196950
    reference: chr 3
allele count: 179
allele frequency: 1.475558486522133e-3
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.789G>A
  hgvsp: ENST00000431818.2:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.921G>A
  hgvsp: ENST00000504021.1:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.612G>A
  hgvsp: ENST00000440957.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1392G>A
  hgvsp: ENST00000296266.3:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1215G>A
  hgvsp: ENST00000507564.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1062G>A
  hgvsp: ENST00000347300.2:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.718G>A
  hgvsp: ENST00000515783.1:c.718G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1147G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1022G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1239G>A
  hgvsp: ENST00000348417.2:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.906G>A
  hgvsp: ENST00000349441.2:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 23783
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19517
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Glu464Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

3-129196961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196961
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196961
    reference: chr 3
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.729A>G
  hgvsp: ENSP00000423288.1:p.Glu244Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1073A>G
  hgvsp: ENSP00000323973.3:p.Glu358Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.623A>G
  hgvsp: ENSP00000401569.2:p.Glu208Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1226A>G
  hgvsp: ENSP00000425536.1:p.Glu409Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1158A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1250A>G
  hgvsp: ENSP00000324005.3:p.Glu417Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.932A>G
  hgvsp: ENSP00000422179.1:p.Glu311Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.917A>G
  hgvsp: ENSP00000324165.3:p.Glu306Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1033A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.800A>G
  hgvsp: ENSP00000410946.2:p.Glu267Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1403A>G
  hgvsp: ENSP00000296266.3:p.Glu468Gly
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu468Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-129196962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196962
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196962
    reference: chr 3
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.933G>T
  hgvsp: ENSP00000422179.1:p.Glu311Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1251G>T
  hgvsp: ENSP00000324005.3:p.Glu417Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1034G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.730G>T
  hgvsp: ENSP00000423288.1:p.Glu244Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1159G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.624G>T
  hgvsp: ENSP00000401569.2:p.Glu208Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.801G>T
  hgvsp: ENSP00000410946.2:p.Glu267Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1227G>T
  hgvsp: ENSP00000425536.1:p.Glu409Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.918G>T
  hgvsp: ENSP00000324165.3:p.Glu306Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1074G>T
  hgvsp: ENSP00000323973.3:p.Glu358Asp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1404G>T
  hgvsp: ENSP00000296266.3:p.Glu468Asp
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu468Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-129196963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196963
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196963
    reference: chr 3
allele count: 16
allele frequency: 1.318739285243307e-4
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.919G>A
  hgvsp: ENSP00000324165.3:p.Asp307Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1160G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.625G>A
  hgvsp: ENSP00000401569.2:p.Asp209Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.802G>A
  hgvsp: ENSP00000410946.2:p.Asp268Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.731G>A
  hgvsp: ENSP00000423288.1:p.Asp245Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.934G>A
  hgvsp: ENSP00000422179.1:p.Asp312Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1405G>A
  hgvsp: ENSP00000296266.3:p.Asp469Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1228G>A
  hgvsp: ENSP00000425536.1:p.Asp410Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1075G>A
  hgvsp: ENSP00000323973.3:p.Asp359Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1035G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1252G>A
  hgvsp: ENSP00000324005.3:p.Asp418Asn
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Asp469Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-129196971-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196971
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196971
    reference: chr 3
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.739A>C
  hgvsp: ENST00000515783.1:c.739A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1043A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1083A>C
  hgvsp: ENST00000347300.2:c.1083A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.942A>C
  hgvsp: ENST00000504021.1:c.942A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1260A>C
  hgvsp: ENST00000348417.2:c.1260A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.927A>C
  hgvsp: ENST00000349441.2:c.927A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.633A>C
  hgvsp: ENST00000440957.2:c.633A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1236A>C
  hgvsp: ENST00000507564.1:c.1236A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1413A>C
  hgvsp: ENST00000296266.3:c.1413A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1168A>C
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.810A>C
  hgvsp: ENST00000431818.2:c.810A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser471Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS

3-129196975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196975
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196975
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.946A>G
  hgvsp: ENSP00000422179.1:p.Met316Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1047A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.814A>G
  hgvsp: ENSP00000410946.2:p.Met272Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1417A>G
  hgvsp: ENSP00000296266.3:p.Met473Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.637A>G
  hgvsp: ENSP00000401569.2:p.Met213Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1264A>G
  hgvsp: ENSP00000324005.3:p.Met422Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1240A>G
  hgvsp: ENSP00000425536.1:p.Met414Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.743A>G
  hgvsp: ENSP00000423288.1:p.Met249Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.931A>G
  hgvsp: ENSP00000324165.3:p.Met311Val
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1172A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1087A>G
  hgvsp: ENSP00000323973.3:p.Met363Val
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met473Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-129196977-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196977
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196977
    reference: chr 3
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1266G>T
  hgvsp: ENSP00000324005.3:p.Met422Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.816G>T
  hgvsp: ENSP00000410946.2:p.Met272Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1242G>T
  hgvsp: ENSP00000425536.1:p.Met414Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.745G>T
  hgvsp: ENSP00000423288.1:p.Met249Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.639G>T
  hgvsp: ENSP00000401569.2:p.Met213Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1419G>T
  hgvsp: ENSP00000296266.3:p.Met473Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1174G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.933G>T
  hgvsp: ENSP00000324165.3:p.Met311Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.948G>T
  hgvsp: ENSP00000422179.1:p.Met316Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1089G>T
  hgvsp: ENSP00000323973.3:p.Met363Ile
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1049G>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met473Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

3-129196984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196984
    reference: chr 3
allele count: 577
allele frequency: 4.755154851576536e-3
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1096C>T
  hgvsp: ENSP00000323973.3:p.Arg366Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.752C>T
  hgvsp: ENSP00000423288.1:p.Arg252Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1426C>T
  hgvsp: ENSP00000296266.3:p.Arg476Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1249C>T
  hgvsp: ENSP00000425536.1:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1181C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1056C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.955C>T
  hgvsp: ENSP00000422179.1:p.Arg319Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.823C>T
  hgvsp: ENSP00000410946.2:p.Arg275Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.940C>T
  hgvsp: ENSP00000324165.3:p.Arg314Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.646C>T
  hgvsp: ENSP00000401569.2:p.Arg216Trp
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1273C>T
  hgvsp: ENSP00000324005.3:p.Arg425Trp
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 5.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 23558
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 9.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
hgvs: p.Arg476Trp
num of homozygotes: 3
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

3-129196998-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196998
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196998
    reference: chr 3
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.837G>T
  hgvsp: ENSP00000410946.2:p.Lys279Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1287G>T
  hgvsp: ENSP00000324005.3:p.Lys429Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.660G>T
  hgvsp: ENSP00000401569.2:p.Lys220Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1195G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.766G>T
  hgvsp: ENSP00000423288.1:p.Lys256Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1070G>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.954G>T
  hgvsp: ENSP00000324165.3:p.Lys318Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.969G>T
  hgvsp: ENSP00000422179.1:p.Lys323Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1263G>T
  hgvsp: ENSP00000425536.1:p.Lys421Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1110G>T
  hgvsp: ENSP00000323973.3:p.Lys370Asn
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1440G>T
  hgvsp: ENSP00000296266.3:p.Lys480Asn
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys480Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-129196999-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129196999
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129196999
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1111A>T
  hgvsp: ENSP00000323973.3:p.Ile371Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1196A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.838A>T
  hgvsp: ENSP00000410946.2:p.Ile280Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1288A>T
  hgvsp: ENSP00000324005.3:p.Ile430Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.955A>T
  hgvsp: ENSP00000324165.3:p.Ile319Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1071A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.970A>T
  hgvsp: ENSP00000422179.1:p.Ile324Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.767A>T
  hgvsp: ENSP00000423288.1:p.Ile257Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1441A>T
  hgvsp: ENSP00000296266.3:p.Ile481Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1264A>T
  hgvsp: ENSP00000425536.1:p.Ile422Phe
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.661A>T
  hgvsp: ENSP00000401569.2:p.Ile221Phe
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile481Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-129197005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197005
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197005
    reference: chr 3
allele count: 7
allele frequency: 5.768723628691983e-5
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.773A>G
  hgvsp: ENSP00000423288.1:p.Lys259Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.667A>G
  hgvsp: ENSP00000401569.2:p.Lys223Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1077A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1270A>G
  hgvsp: ENSP00000425536.1:p.Lys424Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.976A>G
  hgvsp: ENSP00000422179.1:p.Lys326Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1294A>G
  hgvsp: ENSP00000324005.3:p.Lys432Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.844A>G
  hgvsp: ENSP00000410946.2:p.Lys282Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.961A>G
  hgvsp: ENSP00000324165.3:p.Lys321Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1447A>G
  hgvsp: ENSP00000296266.3:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1202A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1117A>G
  hgvsp: ENSP00000323973.3:p.Lys373Glu
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys483Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

3-129197017-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197017
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197017
    reference: chr 3
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1214T>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1306T>G
  hgvsp: ENSP00000324005.3:p.Cys436Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.679T>G
  hgvsp: ENSP00000401569.2:p.Cys227Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1129T>G
  hgvsp: ENSP00000323973.3:p.Cys377Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.973T>G
  hgvsp: ENSP00000324165.3:p.Cys325Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1459T>G
  hgvsp: ENSP00000296266.3:p.Cys487Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.988T>G
  hgvsp: ENSP00000422179.1:p.Cys330Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1282T>G
  hgvsp: ENSP00000425536.1:p.Cys428Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.785T>G
  hgvsp: ENSP00000423288.1:p.Cys263Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.856T>G
  hgvsp: ENSP00000410946.2:p.Cys286Gly
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1089T>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys487Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

3-129197021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197021
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197021
    reference: chr 3
allele count: 23
allele frequency: 1.896187838016093e-4
allele num: 121296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.992A>G
  hgvsp: ENSP00000422179.1:p.Asn331Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1133A>G
  hgvsp: ENSP00000323973.3:p.Asn378Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1463A>G
  hgvsp: ENSP00000296266.3:p.Asn488Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.860A>G
  hgvsp: ENSP00000410946.2:p.Asn287Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1286A>G
  hgvsp: ENSP00000425536.1:p.Asn429Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.977A>G
  hgvsp: ENSP00000324165.3:p.Asn326Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1310A>G
  hgvsp: ENSP00000324005.3:p.Asn437Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.789A>G
  hgvsp: ENSP00000423288.1:p.Asn264Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1218A>G
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.683A>G
  hgvsp: ENSP00000401569.2:p.Asn228Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1093A>G
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23562
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Asn488Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

3-129197056-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197056
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197056
    reference: chr 3
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.824T>A
  hgvsp: ENSP00000423288.1:p.Cys276Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1128T>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.1027T>A
  hgvsp: ENSP00000422179.1:p.Cys343Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1345T>A
  hgvsp: ENSP00000324005.3:p.Cys449Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.718T>A
  hgvsp: ENSP00000401569.2:p.Cys240Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1321T>A
  hgvsp: ENSP00000425536.1:p.Cys441Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.1012T>A
  hgvsp: ENSP00000324165.3:p.Cys338Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.895T>A
  hgvsp: ENSP00000410946.2:p.Cys299Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1168T>A
  hgvsp: ENSP00000323973.3:p.Cys390Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1498T>A
  hgvsp: ENSP00000296266.3:p.Cys500Ser
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1253T>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys500Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-129197090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197090
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197090
    reference: chr 3
allele count: 1
allele frequency: 8.54686244679578e-6
allele num: 117002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.723+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.900+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1258+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1326+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.1032+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.1017+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.829+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1133+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1350+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1503+29G>A
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1173+29G>A
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

3-129197094-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197094
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197094
    reference: chr 3
allele count: 1
allele frequency: 8.620243780494112e-6
allele num: 116006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1258+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.829+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.900+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1133+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1326+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1173+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.1032+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.723+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1503+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.1017+33A>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1350+33A>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-129197099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129197099
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 129197099
    reference: chr 3
allele count: 1
allele frequency: 8.908209806157355e-6
allele num: 112256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000323973
  ensembl transcript: ENST00000347300
  gene symbol: IFT122
  hgvsc: ENST00000347300.2:c.1173+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000401569
  ensembl transcript: ENST00000440957
  gene symbol: IFT122
  hgvsc: ENST00000440957.2:c.723+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000425536
  ensembl transcript: ENST00000507564
  gene symbol: IFT122
  hgvsc: ENST00000507564.1:c.1326+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000421953
  ensembl transcript: ENST00000512220
  gene symbol: IFT122
  hgvsc: ENST00000512220.1:c.*1258+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl transcript: ENST00000506507
  gene symbol: IFT122
  hgvsc: ENST00000506507.1:n.1133+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324005
  ensembl transcript: ENST00000348417
  gene symbol: IFT122
  hgvsc: ENST00000348417.2:c.1350+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000296266
  ensembl transcript: ENST00000296266
  gene symbol: IFT122
  hgvsc: ENST00000296266.3:c.1503+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000422179
  ensembl transcript: ENST00000504021
  gene symbol: IFT122
  hgvsc: ENST00000504021.1:c.1032+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000423288
  ensembl transcript: ENST00000515783
  gene symbol: IFT122
  hgvsc: ENST00000515783.1:c.829+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000324165
  ensembl transcript: ENST00000349441
  gene symbol: IFT122
  hgvsc: ENST00000349441.2:c.1017+38C>T
  variant of: http://identifiers.org/hgnc/13556
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163913
  ensembl protein: ENSP00000410946
  ensembl transcript: ENST00000431818
  gene symbol: IFT122
  hgvsc: ENST00000431818.2:c.900+38C>T
  variant of: http://identifiers.org/hgnc/13556
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5015
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum

GenotypeDepth
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 498
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4949
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 627
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.988e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.975164e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.627e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeDepth
all individuals: 7654
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1850
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4949
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 997
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2744
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29914
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.975156e6

GenotypeDepth
all individuals: 1710
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 997
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1367
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 628
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29914
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4263
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.309e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 2.975156e6

GenotypeDepth
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7658
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 824
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1850
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29907
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.97481e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

GenotypeDepth
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1713
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4948
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7658
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7979
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

DP
type: SiteQuality
SIO_000300: 2.97481e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.13e0

GenotypeDepth
all individuals: 4175
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1366
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2742
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 996
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5829
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.193e0

QD
type: SiteQuality
SIO_000300: 1.173e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 2.974106e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

GenotypeDepth
all individuals: 4971
bin: 9.75e1
variant carriers: 152

GenotypeDepth
all individuals: 2737
bin: 5.75e1
variant carriers: 22

GenotypeDepth
all individuals: 813
bin: 7.75e1
variant carriers: 20

GenotypeQuality
all individuals: 3741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29919
bin: 9.75e1
variant carriers: 385

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 152
allele frequency: 9.205426356589148e-3
allele num: 16512
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 120
allele frequency: 1.386962552011096e-2
allele num: 8652
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 109
allele frequency: 1.633790994663949e-3
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.885170225043277e-4
allele num: 10398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 2.980992e6

GenotypeDepth
all individuals: 4181
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 486
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29718
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 4.153e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

DP
type: SiteQuality
SIO_000300: 2.960246e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.339e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.057e0

GenotypeDepth
all individuals: 2728
bin: 5.75e1
variant carriers: 12

GenotypeDepth
all individuals: 1815
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 4888
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 29745
bin: 9.75e1
variant carriers: 146

GenotypeQuality
all individuals: 8205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5039
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.184033177812338e-4
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 136
allele frequency: 1.30744087675447e-2
allele num: 10402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 2.961177e6

QD
type: SiteQuality
SIO_000300: 1.436e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

GenotypeDepth
all individuals: 1813
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 967
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4868
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.834e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

DP
type: SiteQuality
SIO_000300: 2.956017e6

QD
type: SiteQuality
SIO_000300: 1.012e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.383e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.811e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

GenotypeDepth
all individuals: 7680
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1812
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29639
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

MQRankSum
type: SiteQuality
SIO_000300: -1.134e0

DP
type: SiteQuality
SIO_000300: 2.95557e6

QD
type: SiteQuality
SIO_000300: 8.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

GenotypeDepth
all individuals: 2720
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5829
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4868
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5004
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 2.764e1

FS
type: SiteQuality
SIO_000300: 2.032e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.849e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.296e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 2.951865e6

GenotypeDepth
all individuals: 5826
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1326
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29625
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.998e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 2.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.949675e6

QD
type: SiteQuality
SIO_000300: 1.675e1

GenotypeDepth
all individuals: 966
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1324
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29621
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4258
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.150817686250757e-3
allele num: 16510
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.67e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 2.9491e6

GenotypeDepth
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1788
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4865
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29614
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7907
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.858024691358024e-4
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.945031e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

GenotypeDepth
all individuals: 8851
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1324
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9895
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4865
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7907
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
SIO_000300: -3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.945031e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

GenotypeDepth
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5821
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1322
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7659
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4865
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29611
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3766
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.944067e6

GenotypeDepth
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7748
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

MQ
type: SiteQuality
SIO_000300: 5.894e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.069e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

DP
type: SiteQuality
SIO_000300: 2.943001e6

GenotypeDepth
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4831
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7435
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006072265977274e-5
allele num: 66532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.936387e6

QD
type: SiteQuality
SIO_000300: 4.49e0

FS
type: SiteQuality
SIO_000300: 2.6212e1

MQRankSum
type: SiteQuality
SIO_000300: -5.342e0

VQSLOD
type: SiteQuality
SIO_000300: -2.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.356e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeDepth
all individuals: 1321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29602
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730403183941858e-4
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

DP
type: SiteQuality
SIO_000300: 2.926758e6

FS
type: SiteQuality
SIO_000300: 6.86e0

VQSLOD
type: SiteQuality
SIO_000300: -1.47e-1

QD
type: SiteQuality
SIO_000300: 1.58e1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeDepth
all individuals: 532
bin: 8.75e1
variant carriers: 105

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 572
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6515
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 3878
bin: 8.25e1
variant carriers: 25

GenotypeQuality
all individuals: 4519
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 3416
bin: 9.25e1
variant carriers: 27

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2117
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 31819
bin: 9.75e1
variant carriers: 8968

GenotypeQuality
all individuals: 4134
bin: 7.75e1
variant carriers: 19

South Asian
type: Population
allele count: 1609
allele frequency: 9.745608721986675e-2
allele num: 16510
num of homozygotes: 95

European (Non-Finnish)
type: Population
allele count: 3861
allele frequency: 5.81055863231399e-2
allele num: 66448
num of homozygotes: 116

European (Finnish)
type: Population
allele count: 175
allele frequency: 2.649106872540115e-2
allele num: 6606
num of homozygotes: 1

Other
type: Population
allele count: 76
allele frequency: 8.4070796460177e-2
allele num: 904
num of homozygotes: 3

African
type: Population
allele count: 2305
allele frequency: 2.237864077669903e-1
allele num: 10300
num of homozygotes: 263

Latino
type: Population
allele count: 379
allele frequency: 3.279681550709588e-2
allele num: 11556
num of homozygotes: 9

East Asian
type: Population
allele count: 1333
allele frequency: 1.544611819235226e-1
allele num: 8630
num of homozygotes: 93

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 2.154e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 2.945084e6

GenotypeDepth
all individuals: 1379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25799
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.103e-1

FS
type: SiteQuality
SIO_000300: 6.329e0

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

QD
type: SiteQuality
SIO_000300: 8.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

DP
type: SiteQuality
SIO_000300: 2.763997e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3523
bin: 5.25e1
variant carriers: 28

GenotypeQuality
all individuals: 25966
bin: 9.75e1
variant carriers: 367

GenotypeQuality
all individuals: 7537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5517
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4825
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2853
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.125541125541126e-3
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.04295403165034e-5
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 362
allele frequency: 3.573543928923988e-2
allele num: 10130
num of homozygotes: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.25e1

DP
type: SiteQuality
SIO_000300: 2.755793e6

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.183e0

FS
type: SiteQuality
SIO_000300: 1.562e0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25836
bin: 9.75e1
variant carriers: 161

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 152
allele frequency: 1.485535574667709e-2
allele num: 10232
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.463203463203463e-4
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.522703973949225e-5
allele num: 66332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.277e1

MQRankSum
type: SiteQuality
SIO_000300: -3.308e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 4.59e0

FS
type: SiteQuality
SIO_000300: 3.329e0

DP
type: SiteQuality
SIO_000300: 2.749503e6

GenotypeDepth
all individuals: 7449
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 713
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25663
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.141664970486464e-4
allele num: 9826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.07e1

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e0

FS
type: SiteQuality
SIO_000300: 2.601e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e-1

DP
type: SiteQuality
SIO_000300: 2.724924e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 767
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25661
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.049789769805499e-5
allele num: 66118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

FS
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 2.721619e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

GenotypeDepth
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25673
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4259
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 9.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: -2.364e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 2.712242e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.017e0

QD
type: SiteQuality
SIO_000300: 1.214e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

GenotypeDepth
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.652519893899204e-4
allele num: 11310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.693382e6

FS
type: SiteQuality
SIO_000300: 3.615e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.547e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeDepth
all individuals: 440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059413816312794e-5
allele num: 65372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.467e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 1.70205e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 1.427e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4520
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.896226415094339e-4
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 5.407e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

DP
type: SiteQuality
SIO_000300: 1.707127e6

GenotypeDepth
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5995
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.058103975535168e-5
allele num: 65400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.836e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.712525e6

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

VQSLOD
type: SiteQuality
SIO_000300: -7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

QD
type: SiteQuality
SIO_000300: 5.21e0

GenotypeDepth
all individuals: 1591
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6126
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046180090166931e-5
allele num: 65656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 1.779e0

DP
type: SiteQuality
SIO_000300: 1.76397e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeDepth
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39325
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 47
allele frequency: 7.145028884159319e-3
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.196638962462325e-4
allele num: 65694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.636e0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.367e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 1.767254e6

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4506
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.562043795620438e-4
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.423e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

QD
type: SiteQuality
SIO_000300: 1.399e1

VQSLOD
type: SiteQuality
SIO_000300: -1.859e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.781037e6

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 2.577e0

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

DP
type: SiteQuality
SIO_000300: 1.791459e6

MQ
type: SiteQuality
SIO_000300: 6.011e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeDepth
all individuals: 656
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028284174186906e-5
allele num: 66044
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.577e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.011e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.791459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeDepth
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

FS
type: SiteQuality
SIO_000300: 3.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: -1.284e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.803123e6

GenotypeDepth
all individuals: 656
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2377
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 918
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18056
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4504
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.977724741447892e-4
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015772490123345e-5
allele num: 66318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.806304e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e0

GenotypeDepth
all individuals: 307
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1162
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42561
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.3348e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.095e1

DP
type: SiteQuality
SIO_000300: 1.807585e6

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeDepth
all individuals: 307
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 656
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1749
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.813755e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.314e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

GenotypeDepth
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6655
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 1.058e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.816269e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeDepth
all individuals: 1162
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 685
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

DP
type: SiteQuality
SIO_000300: 1.816967e6

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 3.578e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeDepth
all individuals: 6695
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 2.943e1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 1.4029e1

DP
type: SiteQuality
SIO_000300: 1.818745e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

GenotypeDepth
all individuals: 916
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4499
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216397031991242e-4
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 1.820599e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

FS
type: SiteQuality
SIO_000300: 9.75e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 916
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 657
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6453
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.05e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.821499e6

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

FS
type: SiteQuality
SIO_000300: 2.496e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeDepth
all individuals: 220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4506
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350378105869643e-4
allele num: 66648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

DP
type: SiteQuality
SIO_000300: 1.823307e6

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

FS
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.455e0

DP
type: SiteQuality
SIO_000300: 1.82372e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 1.957e1

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4495
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.053e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

DP
type: SiteQuality
SIO_000300: 1.824063e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 1162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.251700680272109e-4
allele num: 16464
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.826021e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

GenotypeDepth
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.826857e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQRankSum
type: SiteQuality
SIO_000300: 8.4e-1

FS
type: SiteQuality
SIO_000300: 2.623e0

QD
type: SiteQuality
SIO_000300: 1.506e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

GenotypeDepth
all individuals: 173
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4606
bin: 9.75e1
variant carriers: 179

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 168
allele frequency: 1.616006156213928e-2
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.190311418685121e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996282304970918e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.27e-2

DP
type: SiteQuality
SIO_000300: 1.83424e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.216e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeDepth
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.828777e6

FS
type: SiteQuality
SIO_000300: 2.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

GenotypeDepth
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.219e0

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.872e0

DP
type: SiteQuality
SIO_000300: 1.829018e6

GenotypeDepth
all individuals: 307
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4461
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.442307692307692e-3
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.829591e6

FS
type: SiteQuality
SIO_000300: 1.731e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.921e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.6e0

QD
type: SiteQuality
SIO_000300: 1.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeDepth
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 1.829701e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.21e0

GenotypeDepth
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0482e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.929e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

DP
type: SiteQuality
SIO_000300: 1.829702e6

QD
type: SiteQuality
SIO_000300: 1.09e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

GenotypeDepth
all individuals: 169
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43661
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.406e0

DP
type: SiteQuality
SIO_000300: 1.829895e6

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

MQ
type: SiteQuality
SIO_000300: 5.834e1

GenotypeDepth
all individuals: 704
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 9.75e1
variant carriers: 573

GenotypeQuality
all individuals: 6471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 6
allele frequency: 5.189413596263622e-4
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.845414343395501e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 3.932244404113733e-3
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 74
allele frequency: 4.487568223165555e-3
allele num: 16490
num of homozygotes: 1

Other
type: Population
allele count: 6
allele frequency: 6.607929515418502e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 461
allele frequency: 6.910093833378301e-3
allele num: 66714
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.850285e6

QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

GenotypeDepth
all individuals: 651
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.762e0

FS
type: SiteQuality
SIO_000300: 1.314e0

DP
type: SiteQuality
SIO_000300: 1.828742e6

QD
type: SiteQuality
SIO_000300: 1.036e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

GenotypeDepth
all individuals: 192
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6537
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.828705e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e0

FS
type: SiteQuality
SIO_000300: 1.534e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeDepth
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04916067146283e-4
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 1.732e0

DP
type: SiteQuality
SIO_000300: 1.828606e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeDepth
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 1.1683e1

QD
type: SiteQuality
SIO_000300: 1.477e1

VQSLOD
type: SiteQuality
SIO_000300: -1.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.827588e6

GenotypeDepth
all individuals: 192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 6466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.148331384366286e-4
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.302e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 1.828087e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

GenotypeDepth
all individuals: 916
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.80329e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: -4.234e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.396e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 2588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548658861426005e-5
allele num: 64572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.588238e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

GenotypeQuality
all individuals: 5484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1044
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558554907889405e-5
allele num: 64162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.547828e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.351e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

GenotypeQuality
all individuals: 1822
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6825
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.774149844194554e-5
allele num: 14762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.733e0