4-62599227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599227
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599227
    reference: chr 4
allele count: 40
allele frequency: 3.39668144223094e-4
allele num: 117762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1150G>A
  hgvsp: ENSP00000425201.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1354G>A
  hgvsp: ENSP00000425884.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1150G>A
  hgvsp: ENSP00000422533.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1150G>A
  hgvsp: ENSP00000439831.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1354G>A
  hgvsp: ENSP00000421372.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1150G>A
  hgvsp: ENSP00000423388.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1354G>A
  hgvsp: ENSP00000424030.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1354G>A
  hgvsp: ENSP00000425033.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1354G>A
  hgvsp: ENSP00000421476.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1150G>A
  hgvsp: ENSP00000421627.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1354G>A
  hgvsp: ENSP00000423787.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1354G>A
  hgvsp: ENSP00000420931.1:p.Val452Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1150G>A
  hgvsp: ENSP00000423434.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1150G>A
  hgvsp: ENSP00000424258.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1150G>A
  hgvsp: ENSP00000424120.1:p.Val384Ile
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19503
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23568
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Val384Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-62599229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599229
    reference: chr 4
allele count: 3
allele frequency: 2.551063793601932e-5
allele num: 117598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1152C>T
  hgvsp: ENST00000504896.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1356C>T
  hgvsp: ENST00000507625.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1356C>T
  hgvsp: ENST00000507164.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1356C>T
  hgvsp: ENST00000509896.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1152C>T
  hgvsp: ENST00000545650.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1356C>T
  hgvsp: ENST00000506746.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1152C>T
  hgvsp: ENST00000512091.2:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1152C>T
  hgvsp: ENST00000514996.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1356C>T
  hgvsp: ENST00000506720.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1152C>T
  hgvsp: ENST00000508946.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1152C>T
  hgvsp: ENST00000514157.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1152C>T
  hgvsp: ENST00000514591.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1356C>T
  hgvsp: ENST00000511324.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1152C>T
  hgvsp: ENST00000506700.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1356C>T
  hgvsp: ENST00000508693.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val384Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

4-62599238-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599238
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599238
    reference: chr 4
allele count: 167
allele frequency: 1.430823537475582e-3
allele num: 116716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1161T>C
  hgvsp: ENST00000514996.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1365T>C
  hgvsp: ENST00000511324.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1161T>C
  hgvsp: ENST00000504896.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1161T>C
  hgvsp: ENST00000506700.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1365T>C
  hgvsp: ENST00000507164.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1365T>C
  hgvsp: ENST00000508693.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1161T>C
  hgvsp: ENST00000545650.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1365T>C
  hgvsp: ENST00000509896.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1365T>C
  hgvsp: ENST00000507625.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1365T>C
  hgvsp: ENST00000506746.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1161T>C
  hgvsp: ENST00000508946.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1161T>C
  hgvsp: ENST00000514157.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1161T>C
  hgvsp: ENST00000514591.1:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1161T>C
  hgvsp: ENST00000512091.2:c.1161T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1365T>C
  hgvsp: ENST00000506720.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 17874
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
hgvs: p.Tyr387Tyr
num of homozygotes: 2
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-62599255-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599255
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599255
    reference: chr 4
allele count: 1
allele frequency: 8.66190839165685e-6
allele num: 115448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1178C>G
  hgvsp: ENSP00000424258.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1178C>G
  hgvsp: ENSP00000423388.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1178C>G
  hgvsp: ENSP00000423434.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1178C>G
  hgvsp: ENSP00000421627.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1178C>G
  hgvsp: ENSP00000424120.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1382C>G
  hgvsp: ENSP00000421476.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1178C>G
  hgvsp: ENSP00000422533.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1382C>G
  hgvsp: ENSP00000424030.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1382C>G
  hgvsp: ENSP00000425033.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1382C>G
  hgvsp: ENSP00000421372.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1178C>G
  hgvsp: ENSP00000425201.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1382C>G
  hgvsp: ENSP00000425884.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1178C>G
  hgvsp: ENSP00000439831.1:p.Pro393Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1382C>G
  hgvsp: ENSP00000420931.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1382C>G
  hgvsp: ENSP00000423787.1:p.Pro461Arg
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20017
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro393Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

4-62599262-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599262
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599262
    reference: chr 4
allele count: 2
allele frequency: 1.740583443570285e-5
allele num: 114904
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1185T>C
  hgvsp: ENST00000514591.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1389T>C
  hgvsp: ENST00000509896.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1185T>C
  hgvsp: ENST00000545650.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1185T>C
  hgvsp: ENST00000514157.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1389T>C
  hgvsp: ENST00000507625.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1389T>C
  hgvsp: ENST00000506746.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1389T>C
  hgvsp: ENST00000506720.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1185T>C
  hgvsp: ENST00000508946.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1185T>C
  hgvsp: ENST00000512091.2:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1185T>C
  hgvsp: ENST00000504896.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1389T>C
  hgvsp: ENST00000507164.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1389T>C
  hgvsp: ENST00000511324.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1185T>C
  hgvsp: ENST00000506700.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1185T>C
  hgvsp: ENST00000514996.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1389T>C
  hgvsp: ENST00000508693.1:c.1389T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp395Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-62599263-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599263
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599263
    reference: chr 4
allele count: 1
allele frequency: 8.707918981521795e-6
allele num: 114838
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1186A>C
  hgvsp: ENSP00000422533.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1186A>C
  hgvsp: ENSP00000423434.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1186A>C
  hgvsp: ENSP00000421627.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1186A>C
  hgvsp: ENSP00000423388.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1186A>C
  hgvsp: ENSP00000424258.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1186A>C
  hgvsp: ENSP00000424120.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1390A>C
  hgvsp: ENSP00000421476.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1390A>C
  hgvsp: ENSP00000421372.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1186A>C
  hgvsp: ENSP00000439831.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1186A>C
  hgvsp: ENSP00000425201.1:p.Ser396Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1390A>C
  hgvsp: ENSP00000420931.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1390A>C
  hgvsp: ENSP00000425884.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1390A>C
  hgvsp: ENSP00000425033.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1390A>C
  hgvsp: ENSP00000423787.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1390A>C
  hgvsp: ENSP00000424030.1:p.Ser464Arg
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser396Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

4-62599268-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599268
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599268
    reference: chr 4
allele count: 1
allele frequency: 8.743092956564315e-6
allele num: 114376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1395A>T
  hgvsp: ENSP00000421372.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1395A>T
  hgvsp: ENSP00000423787.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1395A>T
  hgvsp: ENSP00000425884.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1191A>T
  hgvsp: ENSP00000422533.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1191A>T
  hgvsp: ENSP00000439831.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1395A>T
  hgvsp: ENSP00000424030.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1395A>T
  hgvsp: ENSP00000421476.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1191A>T
  hgvsp: ENSP00000423434.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1191A>T
  hgvsp: ENSP00000424258.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1191A>T
  hgvsp: ENSP00000423388.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1395A>T
  hgvsp: ENSP00000420931.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1191A>T
  hgvsp: ENSP00000424120.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1191A>T
  hgvsp: ENSP00000425201.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1191A>T
  hgvsp: ENSP00000421627.1:p.Arg397Ser
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1395A>T
  hgvsp: ENSP00000425033.1:p.Arg465Ser
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg397Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-62599269-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599269
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599269
    reference: chr 4
allele count: 1
allele frequency: 8.773622979873309e-6
allele num: 113978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1396T>A
  hgvsp: ENSP00000425033.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1396T>A
  hgvsp: ENSP00000421372.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1396T>A
  hgvsp: ENSP00000421476.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1192T>A
  hgvsp: ENSP00000439831.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1192T>A
  hgvsp: ENSP00000425201.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1192T>A
  hgvsp: ENSP00000421627.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1396T>A
  hgvsp: ENSP00000423787.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1192T>A
  hgvsp: ENSP00000424258.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1192T>A
  hgvsp: ENSP00000424120.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1192T>A
  hgvsp: ENSP00000423434.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1192T>A
  hgvsp: ENSP00000423388.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1192T>A
  hgvsp: ENSP00000422533.1:p.Ser398Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1396T>A
  hgvsp: ENSP00000424030.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1396T>A
  hgvsp: ENSP00000420931.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1396T>A
  hgvsp: ENSP00000425884.1:p.Ser466Thr
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11449
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser398Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

4-62599272-G-GGTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599272
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599276
    reference: chr 4
allele count: 1
allele frequency: 8.789508842245894e-6
allele num: 113772
alternate allele: GGTAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+3_1195+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+3_1399+6dupAAGT
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-62599278-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599278
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599278
    reference: chr 4
allele count: 1
allele frequency: 8.862262712915862e-6
allele num: 112838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+6T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+6T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1195+6T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

4-62599289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599289
    reference: chr 4
allele count: 76264
allele frequency: 6.93334303065566e-1
allele num: 109996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+17G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+17G>A
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 12995
  bin: 2.25e1
  variant carriers: 11410
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 526
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 3098
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 699
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 1.75e1
  variant carriers: 13533
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 7.5e0
  variant carriers: 2427
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 1003
genotype quality: GenotypeQuality
num of homozygotes: 26638
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-62599293-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599293
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599294
    reference: chr 4
allele count: 3
allele frequency: 3.354729049717084e-5
allele num: 89426
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+22dupA
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+22dupA
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24304
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS

4-62599294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599294
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599294
    reference: chr 4
allele count: 2
allele frequency: 2.259733803357964e-5
allele num: 88506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+22A>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

4-62599297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599297
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599297
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 86678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+25C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+25C>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

4-62599299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599299
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599299
    reference: chr 4
allele count: 1
allele frequency: 1.165637020631775e-5
allele num: 85790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+27T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

4-62599301-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599301
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599301
    reference: chr 4
allele count: 1
allele frequency: 1.186690084017658e-5
allele num: 84268
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+29G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+29G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25061
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-62599304-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599304
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599304
    reference: chr 4
allele count: 93
allele frequency: 1.129545509752958e-3
allele num: 82334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+32G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24909
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 2
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-62599317-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62599317
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62599317
    reference: chr 4
allele count: 1
allele frequency: 1.360470178493687e-5
allele num: 73504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1195+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1399+45T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

4-62679478-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679478
    reference: chr 4
allele count: 1
allele frequency: 8.665811639918195e-6
allele num: 115396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-49A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-49A>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-62679482-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679482
    reference: chr 4
allele count: 1
allele frequency: 8.657708823936834e-6
allele num: 115504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-45G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-45G>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

4-62679482-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679482
    reference: chr 4
allele count: 2
allele frequency: 1.731541764787367e-5
allele num: 115504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-45G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

4-62679483-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679483
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679483
    reference: chr 4
allele count: 5
allele frequency: 4.32084896040374e-5
allele num: 115718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-44A>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20323
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

4-62679488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679488
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679488
    reference: chr 4
allele count: 4
allele frequency: 3.453456046138173e-5
allele num: 115826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-39C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-39C>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

4-62679489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679489
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679489
    reference: chr 4
allele count: 7
allele frequency: 6.036460219727152e-5
allele num: 115962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-38G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-38G>A
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26334
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

4-62679499-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679499
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679499
    reference: chr 4
allele count: 2
allele frequency: 1.705291519585273e-5
allele num: 117282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-28T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

4-62679505-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679505
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679505
    reference: chr 4
allele count: 1
allele frequency: 8.469551960701279e-6
allele num: 118070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-22A>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-22A>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13619
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

4-62679512-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679512
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679512
    reference: chr 4
allele count: 1
allele frequency: 8.41864224137931e-6
allele num: 118784
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-15G>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-15G>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

4-62679518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679518
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679518
    reference: chr 4
allele count: 4
allele frequency: 3.353510286892805e-5
allele num: 119278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-9G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-9G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

4-62679522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679522
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679522
    reference: chr 4
allele count: 1
allele frequency: 8.362742310458446e-6
allele num: 119578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-5C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-5C>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1196-5C>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-62679524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679524
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679524
    reference: chr 4
allele count: 2
allele frequency: 1.670760028737073e-5
allele num: 119706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1196-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1400-3C>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1196-3C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-62679535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679535
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679535
    reference: chr 4
allele count: 1
allele frequency: 8.324453915823122e-6
allele num: 120128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1408C>T
  hgvsp: ENSP00000420931.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1204C>T
  hgvsp: ENSP00000423388.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1408C>T
  hgvsp: ENSP00000424030.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1204C>T
  hgvsp: ENSP00000424258.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1408C>T
  hgvsp: ENSP00000423787.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1204C>T
  hgvsp: ENSP00000423434.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1408C>T
  hgvsp: ENSP00000421476.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1408C>T
  hgvsp: ENSP00000421372.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1204C>T
  hgvsp: ENSP00000439831.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1204C>T
  hgvsp: ENSP00000421627.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1204C>T
  hgvsp: ENSP00000422533.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1408C>T
  hgvsp: ENSP00000425884.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1204C>T
  hgvsp: ENSP00000424120.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1408C>T
  hgvsp: ENSP00000425033.1:p.His470Tyr
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1204C>T
  hgvsp: ENSP00000425201.1:p.His402Tyr
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His402Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

4-62679542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679542
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679542
    reference: chr 4
allele count: 2
allele frequency: 1.663727414900343e-5
allele num: 120212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1415G>A
  hgvsp: ENSP00000423787.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1211G>A
  hgvsp: ENSP00000423388.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1211G>A
  hgvsp: ENSP00000424120.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1211G>A
  hgvsp: ENSP00000422533.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1415G>A
  hgvsp: ENSP00000425884.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1415G>A
  hgvsp: ENSP00000421372.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1211G>A
  hgvsp: ENSP00000424258.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1415G>A
  hgvsp: ENSP00000421476.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1211G>A
  hgvsp: ENSP00000439831.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1415G>A
  hgvsp: ENSP00000420931.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1211G>A
  hgvsp: ENSP00000423434.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1415G>A
  hgvsp: ENSP00000424030.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1415G>A
  hgvsp: ENSP00000425033.1:p.Gly472Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1211G>A
  hgvsp: ENSP00000421627.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1211G>A
  hgvsp: ENSP00000425201.1:p.Gly404Glu
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly404Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

4-62679549-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679549
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679549
    reference: chr 4
allele count: 3
allele frequency: 2.494595044071179e-5
allele num: 120260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1422T>G
  hgvsp: ENST00000506720.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1422T>G
  hgvsp: ENST00000509896.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1218T>G
  hgvsp: ENST00000514591.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1218T>G
  hgvsp: ENST00000506700.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1218T>G
  hgvsp: ENST00000504896.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1422T>G
  hgvsp: ENST00000507164.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1218T>G
  hgvsp: ENST00000545650.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1218T>G
  hgvsp: ENST00000508946.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1422T>G
  hgvsp: ENST00000508693.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1422T>G
  hgvsp: ENST00000506746.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1422T>G
  hgvsp: ENST00000507625.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1218T>G
  hgvsp: ENST00000512091.2:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1422T>G
  hgvsp: ENST00000511324.1:c.1422T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1218T>G
  hgvsp: ENST00000514996.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1218T>G
  hgvsp: ENST00000514157.1:c.1218T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val406Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-62679563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679563
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679563
    reference: chr 4
allele count: 1
allele frequency: 8.320990530712775e-6
allele num: 120178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1436C>T
  hgvsp: ENSP00000423787.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1232C>T
  hgvsp: ENSP00000439831.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1436C>T
  hgvsp: ENSP00000421372.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1232C>T
  hgvsp: ENSP00000424258.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1232C>T
  hgvsp: ENSP00000422533.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1232C>T
  hgvsp: ENSP00000423434.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1232C>T
  hgvsp: ENSP00000421627.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1436C>T
  hgvsp: ENSP00000425033.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1436C>T
  hgvsp: ENSP00000424030.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1232C>T
  hgvsp: ENSP00000424120.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1232C>T
  hgvsp: ENSP00000423388.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1436C>T
  hgvsp: ENSP00000421476.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1232C>T
  hgvsp: ENSP00000425201.1:p.Pro411Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1436C>T
  hgvsp: ENSP00000425884.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1436C>T
  hgvsp: ENSP00000420931.1:p.Pro479Leu
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro411Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

4-62679564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679564
    reference: chr 4
allele count: 2
allele frequency: 1.664308895731048e-5
allele num: 120170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1437G>A
  hgvsp: ENST00000508693.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1437G>A
  hgvsp: ENST00000511324.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1233G>A
  hgvsp: ENST00000545650.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1233G>A
  hgvsp: ENST00000514996.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1437G>A
  hgvsp: ENST00000507164.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1233G>A
  hgvsp: ENST00000506700.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1233G>A
  hgvsp: ENST00000514591.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1233G>A
  hgvsp: ENST00000504896.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1437G>A
  hgvsp: ENST00000507625.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1437G>A
  hgvsp: ENST00000506746.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1233G>A
  hgvsp: ENST00000512091.2:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1437G>A
  hgvsp: ENST00000509896.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1233G>A
  hgvsp: ENST00000514157.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1437G>A
  hgvsp: ENST00000506720.1:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1233G>A
  hgvsp: ENST00000508946.1:c.1233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro411Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-62679564-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679564
    reference: chr 4
allele count: 1
allele frequency: 8.321544478655239e-6
allele num: 120170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1437G>T
  hgvsp: ENST00000508693.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1437G>T
  hgvsp: ENST00000507625.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1233G>T
  hgvsp: ENST00000514591.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1233G>T
  hgvsp: ENST00000504896.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1233G>T
  hgvsp: ENST00000545650.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1233G>T
  hgvsp: ENST00000512091.2:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1437G>T
  hgvsp: ENST00000506720.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1437G>T
  hgvsp: ENST00000506746.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1437G>T
  hgvsp: ENST00000507164.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1437G>T
  hgvsp: ENST00000509896.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1233G>T
  hgvsp: ENST00000514157.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1233G>T
  hgvsp: ENST00000508946.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1233G>T
  hgvsp: ENST00000506700.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1437G>T
  hgvsp: ENST00000511324.1:c.1437G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1233G>T
  hgvsp: ENST00000514996.1:c.1233G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro411Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-62679574-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679574
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679574
    reference: chr 4
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1447C>A
  hgvsp: ENSP00000425033.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1243C>A
  hgvsp: ENSP00000424120.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1447C>A
  hgvsp: ENSP00000421476.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1243C>A
  hgvsp: ENSP00000424258.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1243C>A
  hgvsp: ENSP00000439831.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1243C>A
  hgvsp: ENSP00000421627.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1243C>A
  hgvsp: ENSP00000423434.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1447C>A
  hgvsp: ENSP00000421372.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1243C>A
  hgvsp: ENSP00000422533.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1243C>A
  hgvsp: ENSP00000425201.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1447C>A
  hgvsp: ENSP00000423787.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1447C>A
  hgvsp: ENSP00000420931.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1447C>A
  hgvsp: ENSP00000425884.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1447C>A
  hgvsp: ENSP00000424030.1:p.Leu483Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1243C>A
  hgvsp: ENSP00000423388.1:p.Leu415Ile
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu415Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

4-62679586-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679586
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679587
    reference: chr 4
allele count: 1
allele frequency: 8.369041242635244e-6
allele num: 119488
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1256dupT
  hgvsp: ENSP00000423388.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1256dupT
  hgvsp: ENSP00000421627.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1460dupT
  hgvsp: ENSP00000425033.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1256dupT
  hgvsp: ENSP00000424120.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1460dupT
  hgvsp: ENSP00000421476.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1256dupT
  hgvsp: ENSP00000425201.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1460dupT
  hgvsp: ENSP00000420931.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1460dupT
  hgvsp: ENSP00000424030.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1256dupT
  hgvsp: ENSP00000424258.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1256dupT
  hgvsp: ENSP00000439831.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1256dupT
  hgvsp: ENSP00000422533.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1460dupT
  hgvsp: ENSP00000423787.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1460dupT
  hgvsp: ENSP00000421372.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1256dupT
  hgvsp: ENSP00000423434.1:p.Glu420ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1460dupT
  hgvsp: ENSP00000425884.1:p.Glu488ArgfsTer6
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu420ArgfsTer6
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-62679586-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679586
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679586
    reference: chr 4
allele count: 1
allele frequency: 8.369041242635244e-6
allele num: 119488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1459C>G
  hgvsp: ENSP00000423787.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1459C>G
  hgvsp: ENSP00000424030.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1255C>G
  hgvsp: ENSP00000439831.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1255C>G
  hgvsp: ENSP00000424258.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1459C>G
  hgvsp: ENSP00000425884.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1255C>G
  hgvsp: ENSP00000423434.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1459C>G
  hgvsp: ENSP00000421372.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1459C>G
  hgvsp: ENSP00000425033.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1255C>G
  hgvsp: ENSP00000424120.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1255C>G
  hgvsp: ENSP00000425201.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1255C>G
  hgvsp: ENSP00000423388.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1255C>G
  hgvsp: ENSP00000422533.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1459C>G
  hgvsp: ENSP00000420931.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1459C>G
  hgvsp: ENSP00000421476.1:p.Leu487Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1255C>G
  hgvsp: ENSP00000421627.1:p.Leu419Val
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu419Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

4-62679588-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679588
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679588
    reference: chr 4
allele count: 2
allele frequency: 1.674621116972285e-5
allele num: 119430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1461A>G
  hgvsp: ENST00000506746.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1257A>G
  hgvsp: ENST00000506700.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1257A>G
  hgvsp: ENST00000508946.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1257A>G
  hgvsp: ENST00000545650.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1461A>G
  hgvsp: ENST00000507625.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1461A>G
  hgvsp: ENST00000507164.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1257A>G
  hgvsp: ENST00000512091.2:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1461A>G
  hgvsp: ENST00000509896.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1257A>G
  hgvsp: ENST00000504896.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1257A>G
  hgvsp: ENST00000514996.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1257A>G
  hgvsp: ENST00000514157.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1461A>G
  hgvsp: ENST00000506720.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1461A>G
  hgvsp: ENST00000511324.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1461A>G
  hgvsp: ENST00000508693.1:c.1461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1257A>G
  hgvsp: ENST00000514591.1:c.1257A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu419Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum

4-62679597-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679597
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679597
    reference: chr 4
allele count: 1
allele frequency: 8.45809016324114e-6
allele num: 118230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1470C>T
  hgvsp: ENST00000508693.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1266C>T
  hgvsp: ENST00000545650.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1266C>T
  hgvsp: ENST00000514996.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1266C>T
  hgvsp: ENST00000508946.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1266C>T
  hgvsp: ENST00000514157.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1470C>T
  hgvsp: ENST00000506746.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1470C>T
  hgvsp: ENST00000507164.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1470C>T
  hgvsp: ENST00000507625.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1470C>T
  hgvsp: ENST00000511324.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1266C>T
  hgvsp: ENST00000506700.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1266C>T
  hgvsp: ENST00000514591.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1470C>T
  hgvsp: ENST00000509896.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1266C>T
  hgvsp: ENST00000512091.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1470C>T
  hgvsp: ENST00000506720.1:c.1470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1266C>T
  hgvsp: ENST00000504896.1:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30743
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro422Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-62679600-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679600
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679600
    reference: chr 4
allele count: 1
allele frequency: 8.510058889607517e-6
allele num: 117508
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1269T>C
  hgvsp: ENST00000514591.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1473T>C
  hgvsp: ENST00000507164.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1269T>C
  hgvsp: ENST00000508946.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1473T>C
  hgvsp: ENST00000506746.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1269T>C
  hgvsp: ENST00000504896.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1473T>C
  hgvsp: ENST00000507625.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1473T>C
  hgvsp: ENST00000511324.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1473T>C
  hgvsp: ENST00000508693.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1473T>C
  hgvsp: ENST00000506720.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1269T>C
  hgvsp: ENST00000545650.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1269T>C
  hgvsp: ENST00000514996.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1269T>C
  hgvsp: ENST00000506700.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1269T>C
  hgvsp: ENST00000514157.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1269T>C
  hgvsp: ENST00000512091.2:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1473T>C
  hgvsp: ENST00000509896.1:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser423Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-62679608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679608
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679608
    reference: chr 4
allele count: 1
allele frequency: 8.635280301198577e-6
allele num: 115804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1276+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1480+1G>A
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1276+1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-62679616-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679616
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679616
    reference: chr 4
allele count: 3
allele frequency: 2.648913062673283e-5
allele num: 113254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1276+9T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1480+9T>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22409
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-62679623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679623
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679623
    reference: chr 4
allele count: 3
allele frequency: 2.694062286720069e-5
allele num: 111356
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1480+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1276+16T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

4-62679639-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62679639
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62679639
    reference: chr 4
allele count: 10
allele frequency: 9.332362767605503e-5
allele num: 107154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1480+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1276+32C>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

4-62758327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758327
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758327
    reference: chr 4
allele count: 14
allele frequency: 1.178193324693249e-4
allele num: 118826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-47T>C
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24337
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/4-62758336-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758336
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758336
    reference: chr 4
allele count: 1
allele frequency: 8.409438754057554e-6
allele num: 118914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-38C>A
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-62758338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758338
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758338
    reference: chr 4
allele count: 1
allele frequency: 8.402514032198434e-6
allele num: 119012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-36A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-36A>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-62758339-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758339
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758339
    reference: chr 4
allele count: 1
allele frequency: 8.402372830087217e-6
allele num: 119014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-35G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-35G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

4-62758342-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758342
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758342
    reference: chr 4
allele count: 1
allele frequency: 8.391655337931961e-6
allele num: 119166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-32A>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22193
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

4-62758347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758347
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758347
    reference: chr 4
allele count: 1
allele frequency: 8.373386029842748e-6
allele num: 119426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-27G>A
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-27G>A
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

4-62758348-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758348
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758348
    reference: chr 4
allele count: 1
allele frequency: 8.369321415419637e-6
allele num: 119484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-26G>T
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-62758355-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758355
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758356
    reference: chr 4
allele count: 2
allele frequency: 1.668669069550127e-5
allele num: 119856
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-16dupT
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-16dupT
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26168
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

4-62758357-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758357
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758357
    reference: chr 4
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-17T>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-17T>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

4-62758361-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758361
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758361
    reference: chr 4
allele count: 1
allele frequency: 8.327365388138501e-6
allele num: 120086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277-13A>G
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481-13A>G
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

4-62758374-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758374
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758374
    reference: chr 4
allele count: 6
allele frequency: 4.978344202718176e-5
allele num: 120522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1277A>T
  hgvsp: ENSP00000421627.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1481A>T
  hgvsp: ENSP00000421372.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1481A>T
  hgvsp: ENSP00000424030.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1481A>T
  hgvsp: ENSP00000421476.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1481A>T
  hgvsp: ENSP00000425033.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1277A>T
  hgvsp: ENSP00000424258.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1277A>T
  hgvsp: ENSP00000439831.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1277A>T
  hgvsp: ENSP00000423434.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1481A>T
  hgvsp: ENSP00000423787.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1277A>T
  hgvsp: ENSP00000423388.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1481A>T
  hgvsp: ENSP00000425884.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1481A>T
  hgvsp: ENSP00000420931.1:p.Asp494Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1277A>T
  hgvsp: ENSP00000422533.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1277A>T
  hgvsp: ENSP00000424120.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1277A>T
  hgvsp: ENSP00000425201.1:p.Asp426Val
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp426Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

4-62758378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758378
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758378
    reference: chr 4
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1281C>T
  hgvsp: ENST00000508946.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1281C>T
  hgvsp: ENST00000504896.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1281C>T
  hgvsp: ENST00000506700.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1485C>T
  hgvsp: ENST00000507164.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1281C>T
  hgvsp: ENST00000514157.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1485C>T
  hgvsp: ENST00000511324.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1485C>T
  hgvsp: ENST00000507625.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1485C>T
  hgvsp: ENST00000509896.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1485C>T
  hgvsp: ENST00000508693.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1485C>T
  hgvsp: ENST00000506720.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1281C>T
  hgvsp: ENST00000545650.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1281C>T
  hgvsp: ENST00000514996.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1281C>T
  hgvsp: ENST00000514591.1:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1281C>T
  hgvsp: ENST00000512091.2:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1485C>T
  hgvsp: ENST00000506746.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile427Ile
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

4-62758381-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758381
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758381
    reference: chr 4
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1284T>C
  hgvsp: ENST00000514157.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1488T>C
  hgvsp: ENST00000506720.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1284T>C
  hgvsp: ENST00000545650.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1284T>C
  hgvsp: ENST00000504896.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1284T>C
  hgvsp: ENST00000508946.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1488T>C
  hgvsp: ENST00000508693.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1488T>C
  hgvsp: ENST00000511324.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1488T>C
  hgvsp: ENST00000509896.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1284T>C
  hgvsp: ENST00000514591.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1284T>C
  hgvsp: ENST00000514996.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1488T>C
  hgvsp: ENST00000507164.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1284T>C
  hgvsp: ENST00000512091.2:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1284T>C
  hgvsp: ENST00000506700.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1488T>C
  hgvsp: ENST00000507625.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1488T>C
  hgvsp: ENST00000506746.1:c.1488T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser428Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-62758386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758386
    reference: chr 4
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1493C>T
  hgvsp: ENSP00000421476.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1289C>T
  hgvsp: ENSP00000423388.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1289C>T
  hgvsp: ENSP00000424120.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1289C>T
  hgvsp: ENSP00000421627.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1493C>T
  hgvsp: ENSP00000423787.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1289C>T
  hgvsp: ENSP00000422533.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1289C>T
  hgvsp: ENSP00000423434.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1493C>T
  hgvsp: ENSP00000424030.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1493C>T
  hgvsp: ENSP00000425033.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1493C>T
  hgvsp: ENSP00000420931.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1289C>T
  hgvsp: ENSP00000439831.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1289C>T
  hgvsp: ENSP00000424258.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1493C>T
  hgvsp: ENSP00000421372.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1493C>T
  hgvsp: ENSP00000425884.1:p.Thr498Ile
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1289C>T
  hgvsp: ENSP00000425201.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr430Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

4-62758396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758396
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758396
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1503T>C
  hgvsp: ENST00000507164.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1503T>C
  hgvsp: ENST00000508693.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1299T>C
  hgvsp: ENST00000545650.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1299T>C
  hgvsp: ENST00000514591.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1503T>C
  hgvsp: ENST00000506720.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1299T>C
  hgvsp: ENST00000504896.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1299T>C
  hgvsp: ENST00000514157.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1299T>C
  hgvsp: ENST00000508946.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1503T>C
  hgvsp: ENST00000511324.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1299T>C
  hgvsp: ENST00000514996.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1299T>C
  hgvsp: ENST00000506700.1:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1299T>C
  hgvsp: ENST00000512091.2:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1503T>C
  hgvsp: ENST00000509896.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1503T>C
  hgvsp: ENST00000507625.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1503T>C
  hgvsp: ENST00000506746.1:c.1503T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu433Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

4-62758397-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758397
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758397
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1504G>C
  hgvsp: ENSP00000421476.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1504G>C
  hgvsp: ENSP00000423787.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1300G>C
  hgvsp: ENSP00000421627.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1504G>C
  hgvsp: ENSP00000425884.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1300G>C
  hgvsp: ENSP00000423434.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1504G>C
  hgvsp: ENSP00000421372.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1504G>C
  hgvsp: ENSP00000425033.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1300G>C
  hgvsp: ENSP00000422533.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1300G>C
  hgvsp: ENSP00000424120.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1300G>C
  hgvsp: ENSP00000439831.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1300G>C
  hgvsp: ENSP00000425201.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1504G>C
  hgvsp: ENSP00000424030.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1300G>C
  hgvsp: ENSP00000423388.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1504G>C
  hgvsp: ENSP00000420931.1:p.Gly502Arg
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1300G>C
  hgvsp: ENSP00000424258.1:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly434Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

4-62758398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758398
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758398
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1301G>A
  hgvsp: ENSP00000425201.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1505G>A
  hgvsp: ENSP00000424030.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1301G>A
  hgvsp: ENSP00000424120.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1301G>A
  hgvsp: ENSP00000424258.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1505G>A
  hgvsp: ENSP00000421476.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1301G>A
  hgvsp: ENSP00000439831.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1301G>A
  hgvsp: ENSP00000423434.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1505G>A
  hgvsp: ENSP00000425033.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1301G>A
  hgvsp: ENSP00000421627.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1301G>A
  hgvsp: ENSP00000423388.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1505G>A
  hgvsp: ENSP00000423787.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1301G>A
  hgvsp: ENSP00000422533.1:p.Gly434Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1505G>A
  hgvsp: ENSP00000421372.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1505G>A
  hgvsp: ENSP00000425884.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1505G>A
  hgvsp: ENSP00000420931.1:p.Gly502Asp
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly434Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

4-62758407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758407
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758407
    reference: chr 4
allele count: 2
allele frequency: 1.656314699792961e-5
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425201
  ensembl transcript: ENST00000514157
  gene symbol: LPHN3
  hgvsc: ENST00000514157.1:c.1310G>A
  hgvsp: ENSP00000425201.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1514G>A
  hgvsp: ENSP00000421476.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1514G>A
  hgvsp: ENSP00000425033.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423388
  ensembl transcript: ENST00000512091
  gene symbol: LPHN3
  hgvsc: ENST00000512091.2:c.1310G>A
  hgvsp: ENSP00000423388.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425884
  ensembl transcript: ENST00000506746
  gene symbol: LPHN3
  hgvsc: ENST00000506746.1:c.1514G>A
  hgvsp: ENSP00000425884.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000439831
  ensembl transcript: ENST00000545650
  gene symbol: LPHN3
  hgvsc: ENST00000545650.1:c.1310G>A
  hgvsp: ENSP00000439831.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000422533
  ensembl transcript: ENST00000514591
  gene symbol: LPHN3
  hgvsc: ENST00000514591.1:c.1310G>A
  hgvsp: ENSP00000422533.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424258
  ensembl transcript: ENST00000514996
  gene symbol: LPHN3
  hgvsc: ENST00000514996.1:c.1310G>A
  hgvsp: ENSP00000424258.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000420931
  ensembl transcript: ENST00000506720
  gene symbol: LPHN3
  hgvsc: ENST00000506720.1:c.1514G>A
  hgvsp: ENSP00000420931.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424120
  ensembl transcript: ENST00000506700
  gene symbol: LPHN3
  hgvsc: ENST00000506700.1:c.1310G>A
  hgvsp: ENSP00000424120.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421627
  ensembl transcript: ENST00000508946
  gene symbol: LPHN3
  hgvsc: ENST00000508946.1:c.1310G>A
  hgvsp: ENSP00000421627.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000424030
  ensembl transcript: ENST00000508693
  gene symbol: LPHN3
  hgvsc: ENST00000508693.1:c.1514G>A
  hgvsp: ENSP00000424030.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423787
  ensembl transcript: ENST00000509896
  gene symbol: LPHN3
  hgvsc: ENST00000509896.1:c.1514G>A
  hgvsp: ENSP00000423787.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000423434
  ensembl transcript: ENST00000504896
  gene symbol: LPHN3
  hgvsc: ENST00000504896.1:c.1310G>A
  hgvsp: ENSP00000423434.1:p.Ser437Asn
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421372
  ensembl transcript: ENST00000507625
  gene symbol: LPHN3
  hgvsc: ENST00000507625.1:c.1514G>A
  hgvsp: ENSP00000421372.1:p.Ser505Asn
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser437Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-62758415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 62758415
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 62758415
    reference: chr 4
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000425033
  ensembl transcript: ENST00000511324
  gene symbol: LPHN3
  hgvsc: ENST00000511324.1:c.1522A>G
  hgvsp: ENSP00000425033.1:p.Thr508Ala
  variant of: http://identifiers.org/hgnc/20974
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000150471
  ensembl protein: ENSP00000421476
  ensembl transcript: ENST00000507164
  gene symbol: LPHN3
  hgvsc: ENST00000507164.1:c.1522A>G
  hgvsp: ENSP00000421476.1:p.Thr508Ala
  variant of: http://identifiers.org/hgnc/20974
canonical: true
consequence: missense
filter: PASS
hgvs: p.Thr440Ala
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4738
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1375
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1622
bin: 3.75e1
variant carriers: 4

GenotypeDepth
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 213
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 633
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 822
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 396
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.303015414849843e-4
allele num: 65132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.591463414634146e-3
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.066183136899366e-5
allele num: 11030
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038421599169263e-4
allele num: 9630
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.710315591144607e-4
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.233636703652911e-5
allele num: 16042
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

DP
type: SiteQuality
SIO_000300: 1.632409e6

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeDepth
all individuals: 1618
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4652
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1958
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 965
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23487
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 576
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.075692799803156e-5
allele num: 65026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.071117561683599e-5
allele num: 11024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

FS
type: SiteQuality
SIO_000300: 2.452e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 1.62659e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

GenotypeDepth
all individuals: 295
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 5.25e1
variant carriers: 5

GenotypeDepth
all individuals: 1872
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21906
bin: 2.25e1
variant carriers: 40

GenotypeDepth
all individuals: 961
bin: 4.25e1
variant carriers: 19

GenotypeDepth
all individuals: 212
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 625
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 9.75e1
variant carriers: 163

GenotypeQuality
all individuals: 34706
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 165
allele frequency: 1.04602510460251e-2
allele num: 15774
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.823819077147547e-4
allele num: 10966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.449e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.5839e6

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5061
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.204712812960235e-5
allele num: 10864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.208e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 5.43e0

FS
type: SiteQuality
SIO_000300: 4.582e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.442e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.513592e6

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2615
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9796
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 293
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6887
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 938
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.305653479566523e-4
allele num: 15318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

QD
type: SiteQuality
SIO_000300: 1.877e1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.477991e6

VQSLOD
type: SiteQuality
SIO_000300: -6.863e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 937
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 212
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7331
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3535
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10020
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4390
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575795776867318e-5
allele num: 63460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.74e0

VQSLOD
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SIO_000300: -2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

FS
type: SiteQuality
SIO_000300: 4.708e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

DP
type: SiteQuality
SIO_000300: 1.47161e6

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 5.75e1
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10766
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581627811343435e-5
allele num: 63226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

QD
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SIO_000300: 9.859999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.442164e6

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587301587301587e-5
allele num: 63000
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.423285e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

GenotypeDepth
all individuals: 212
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 354
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15014
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.310986964618249e-5
allele num: 10740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

DP
type: SiteQuality
SIO_000300: 1.421291e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 5.935e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 462
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603437770580124e-5
allele num: 62366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.386391e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 2.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

GenotypeDepth
all individuals: 223
bin: 6.25e1
variant carriers: 217

GenotypeDepth
all individuals: 11896
bin: 1.25e1
variant carriers: 9262

GenotypeDepth
all individuals: 104
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variant carriers: 104

GenotypeDepth
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variant carriers: 6470

GenotypeDepth
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variant carriers: 1624

GenotypeDepth
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variant carriers: 1405

GenotypeDepth
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variant carriers: 95

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 659

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2278

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2790

GenotypeQuality
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GenotypeQuality
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variant carriers: 831

GenotypeQuality
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variant carriers: 1057

GenotypeQuality
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bin: 5.25e1
variant carriers: 2996

Latino
type: Population
allele count: 8260
allele frequency: 7.957610789980732e-1
allele num: 10380
num of homozygotes: 3250

South Asian
type: Population
allele count: 10311
allele frequency: 7.068138195777351e-1
allele num: 14588
num of homozygotes: 3602

East Asian
type: Population
allele count: 7698
allele frequency: 9.369522882181111e-1
allele num: 8216
num of homozygotes: 3603

Other
type: Population
allele count: 585
allele frequency: 6.997607655502392e-1
allele num: 836
num of homozygotes: 199

European (Non-Finnish)
type: Population
allele count: 37207
allele frequency: 6.158875720055618e-1
allele num: 60412
num of homozygotes: 11146

African
type: Population
allele count: 7985
allele frequency: 8.653012570437798e-1
allele num: 9228
num of homozygotes: 3438

European (Finnish)
type: Population
allele count: 4218
allele frequency: 6.65719696969697e-1
allele num: 6336
num of homozygotes: 1400

DP
type: SiteQuality
SIO_000300: 1.450325e6

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ClippingRankSum
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SIO_000300: -1.43e-1

QD
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SIO_000300: 2.487e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2191
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GenotypeQuality
all individuals: 5016
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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DP
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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South Asian
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FS
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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Other
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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East Asian
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Latino
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South Asian
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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FS
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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QD
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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DP
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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African
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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VQSLOD
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MQRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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DP
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ClippingRankSum
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MQ
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VQSLOD
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FS
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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QD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.072951877573597e-5
allele num: 65084
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.526531110704036e-5
allele num: 65508
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.199628022318661e-5
allele num: 16130
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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QD
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MQ
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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South Asian
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Other
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Latino
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Latino
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MQRankSum
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MQ
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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East Asian
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: 4.0e-4

FS
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BaseQRankSum
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SIO_000300: -3.83e-1

QD
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
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allele frequency: 8.775008775008775e-5
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 1.03e0

MQ
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InbreedingCoeff
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QD
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MQRankSum
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FS
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DP
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BaseQRankSum
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SIO_000300: 7.11e-1

ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8564
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European (Finnish)
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Other
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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QD
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 66170
num of homozygotes: 0

East Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQRankSum
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Other
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African
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South Asian
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Latino
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
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allele frequency: 6.277463904582549e-5
allele num: 15930
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Latino
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64166
num of homozygotes: 0

African
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Other
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.27725584443959e-4
allele num: 9154
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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SIO_000300: 1.3e-3

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 7.07e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Latino
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allele count: 1
allele frequency: 9.59140610013428e-5
allele num: 10426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.253302101633157e-5
allele num: 61476
num of homozygotes: 0

Other
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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SIO_000300: 1.479761e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 10004
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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Other
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South Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 65608
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Latino
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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QD
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MQ
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MQRankSum
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SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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ClippingRankSum
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SIO_000300: 3.55e-1

ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65704
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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InbreedingCoeff
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SIO_000300: 9.2e-3

DP
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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African
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Other
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MQ
type: SiteQuality
SIO_000300: 5.799e1

FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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DP
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ClippingRankSum
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SIO_000300: -7.6e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
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European (Finnish)
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Other
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66132
num of homozygotes: 0

Other
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Latino
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East Asian
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South Asian
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European (Finnish)
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African
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QD
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FS
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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MQRankSum
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QD
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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FS
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QD
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DP
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020199959192002e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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Other
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allele count: 0
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Latino
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InbreedingCoeff
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SIO_000300: 6.3e-3

MQRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66708
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Latino
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African
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East Asian
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Other
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FS
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.632692e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
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VQSLOD
type: SiteQuality
SIO_000300: -1.981e0

FS
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InbreedingCoeff
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SIO_000300: 3.2e-3

BaseQRankSum
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MQ
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DP
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QD
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MQRankSum
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SIO_000300: 2.37e0

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -3.69e-1