2-128399645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399645
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399645
    reference: chr 2
allele count: 5
allele frequency: 4.975124378109453e-5
allele num: 100500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.624G>A
  hgvsp: ENST00000409808.2:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.183G>A
  hgvsp: ENST00000409286.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.711G>A
  hgvsp: ENST00000324938.5:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.183G>A
  hgvsp: ENST00000410038.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.183G>A
  hgvsp: ENST00000409754.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1027G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2380G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.62G>A
  hgvsp: ENST00000426981.1:c.62G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.282G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+853G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.639G>A
  hgvsp: ENST00000355119.4:c.639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.624G>A
  hgvsp: ENST00000409455.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.183G>A
  hgvsp: ENST00000409254.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.624G>A
  hgvsp: ENST00000410011.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.705G>A
  hgvsp: ENST00000545738.2:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.775G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu237Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-128399646-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399646
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399646
    reference: chr 2
allele count: 1
allele frequency: 9.935222350276199e-6
allele num: 100652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2379T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.182T>C
  hgvsp: ENSP00000386570.1:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.281T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.774T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.61T>C
  hgvsp: ENSP00000397253.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.710T>C
  hgvsp: ENSP00000326888.5:p.Leu237Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.623T>C
  hgvsp: ENSP00000387002.1:p.Leu208Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+852T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.638T>C
  hgvsp: ENSP00000347240.4:p.Leu213Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.182T>C
  hgvsp: ENSP00000386345.1:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.623T>C
  hgvsp: ENSP00000386637.2:p.Leu208Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1026T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.182T>C
  hgvsp: ENSP00000386907.1:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.704T>C
  hgvsp: ENSP00000443794.2:p.Leu235Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.182T>C
  hgvsp: ENSP00000386252.1:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.623T>C
  hgvsp: ENSP00000386383.1:p.Leu208Pro
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu237Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-128399648-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399648
    reference: chr 2
allele count: 1
allele frequency: 9.939765023954834e-6
allele num: 100606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.621G>T
  hgvsp: ENST00000409455.1:c.621G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.180G>T
  hgvsp: ENST00000409754.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.180G>T
  hgvsp: ENST00000410038.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.180G>T
  hgvsp: ENST00000409254.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2377G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.702G>T
  hgvsp: ENST00000545738.2:c.702G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.180G>T
  hgvsp: ENST00000409286.1:c.180G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1024G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.708G>T
  hgvsp: ENST00000324938.5:c.708G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.59G>T
  hgvsp: ENST00000426981.1:c.59G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.621G>T
  hgvsp: ENST00000410011.1:c.621G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.636G>T
  hgvsp: ENST00000355119.4:c.636G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.621G>T
  hgvsp: ENST00000409808.2:c.621G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+850G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.772G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.279G>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala236Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-128399648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399648
    reference: chr 2
allele count: 7
allele frequency: 6.957835516768384e-5
allele num: 100606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.180G>A
  hgvsp: ENST00000409286.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1024G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2377G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.180G>A
  hgvsp: ENST00000410038.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.180G>A
  hgvsp: ENST00000409754.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.708G>A
  hgvsp: ENST00000324938.5:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+850G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.180G>A
  hgvsp: ENST00000409254.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.59G>A
  hgvsp: ENST00000426981.1:c.59G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.702G>A
  hgvsp: ENST00000545738.2:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.279G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.621G>A
  hgvsp: ENST00000409808.2:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.621G>A
  hgvsp: ENST00000409455.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.621G>A
  hgvsp: ENST00000410011.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.772G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.636G>A
  hgvsp: ENST00000355119.4:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33530
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala236Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-128399649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399649
    reference: chr 2
allele count: 12
allele frequency: 1.192060874575328e-4
allele num: 100666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.701C>T
  hgvsp: ENSP00000443794.2:p.Ala234Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.179C>T
  hgvsp: ENSP00000386570.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.620C>T
  hgvsp: ENSP00000386637.2:p.Ala207Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.179C>T
  hgvsp: ENSP00000386907.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.620C>T
  hgvsp: ENSP00000387002.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.179C>T
  hgvsp: ENSP00000386345.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.58C>T
  hgvsp: ENSP00000397253.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+849C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.635C>T
  hgvsp: ENSP00000347240.4:p.Ala212Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.771C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.707C>T
  hgvsp: ENSP00000326888.5:p.Ala236Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.620C>T
  hgvsp: ENSP00000386383.1:p.Ala207Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.278C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.179C>T
  hgvsp: ENSP00000386252.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2376C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1023C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala236Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

2-128399650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399650
    reference: chr 2
allele count: 5
allele frequency: 4.968104767393335e-5
allele num: 100642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.178G>A
  hgvsp: ENSP00000386345.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.178G>A
  hgvsp: ENSP00000386570.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.706G>A
  hgvsp: ENSP00000326888.5:p.Ala236Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2375G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.619G>A
  hgvsp: ENSP00000386637.2:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.634G>A
  hgvsp: ENSP00000347240.4:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.178G>A
  hgvsp: ENSP00000386907.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.770G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.619G>A
  hgvsp: ENSP00000386383.1:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.277G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.178G>A
  hgvsp: ENSP00000386252.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.700G>A
  hgvsp: ENSP00000443794.2:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1022G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.619G>A
  hgvsp: ENSP00000387002.1:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.57G>A
  hgvsp: ENSP00000397253.1:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+848G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33131
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala236Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

2-128399651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399651
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399651
    reference: chr 2
allele count: 9
allele frequency: 8.944366043211227e-5
allele num: 100622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.177C>T
  hgvsp: ENST00000410038.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1021C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.705C>T
  hgvsp: ENST00000324938.5:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.618C>T
  hgvsp: ENST00000409808.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.56C>T
  hgvsp: ENST00000426981.1:c.56C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.276C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.699C>T
  hgvsp: ENST00000545738.2:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.177C>T
  hgvsp: ENST00000409754.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.618C>T
  hgvsp: ENST00000409455.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.633C>T
  hgvsp: ENST00000355119.4:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2374C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+847C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.769C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.618C>T
  hgvsp: ENST00000410011.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.177C>T
  hgvsp: ENST00000409286.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.177C>T
  hgvsp: ENST00000409254.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32910
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn235Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

2-128399656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399656
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399656
    reference: chr 2
allele count: 3
allele frequency: 3.003844921499519e-5
allele num: 99872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.613G>A
  hgvsp: ENSP00000386637.2:p.Val205Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.172G>A
  hgvsp: ENSP00000386907.1:p.Val58Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.628G>A
  hgvsp: ENSP00000347240.4:p.Val210Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.694G>A
  hgvsp: ENSP00000443794.2:p.Val232Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.613G>A
  hgvsp: ENSP00000386383.1:p.Val205Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.172G>A
  hgvsp: ENSP00000386345.1:p.Val58Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.700G>A
  hgvsp: ENSP00000326888.5:p.Val234Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.613G>A
  hgvsp: ENSP00000387002.1:p.Val205Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.51G>A
  hgvsp: ENSP00000397253.1:p.Val18Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1016G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.172G>A
  hgvsp: ENSP00000386252.1:p.Val58Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.764G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.172G>A
  hgvsp: ENSP00000386570.1:p.Val58Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2369G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+842G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.271G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31064
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val234Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-128399658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399658
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399658
    reference: chr 2
allele count: 7
allele frequency: 7.026278280770079e-5
allele num: 99626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.611T>C
  hgvsp: ENSP00000386383.1:p.Val204Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.611T>C
  hgvsp: ENSP00000386637.2:p.Val204Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.170T>C
  hgvsp: ENSP00000386252.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.170T>C
  hgvsp: ENSP00000386345.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.49T>C
  hgvsp: ENSP00000397253.1:p.Val17Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1014T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+840T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.170T>C
  hgvsp: ENSP00000386570.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.692T>C
  hgvsp: ENSP00000443794.2:p.Val231Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.170T>C
  hgvsp: ENSP00000386907.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.698T>C
  hgvsp: ENSP00000326888.5:p.Val233Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.611T>C
  hgvsp: ENSP00000387002.1:p.Val204Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2367T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.269T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.626T>C
  hgvsp: ENSP00000347240.4:p.Val209Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.762T>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val233Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-128399661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399661
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399661
    reference: chr 2
allele count: 3
allele frequency: 3.027795159564805e-5
allele num: 99082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.167G>A
  hgvsp: ENSP00000386907.1:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1011G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.167G>A
  hgvsp: ENSP00000386252.1:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.623G>A
  hgvsp: ENSP00000347240.4:p.Arg208Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.608G>A
  hgvsp: ENSP00000386637.2:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.689G>A
  hgvsp: ENSP00000443794.2:p.Arg230Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.46G>A
  hgvsp: ENSP00000397253.1:p.Arg16Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.608G>A
  hgvsp: ENSP00000386383.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.167G>A
  hgvsp: ENSP00000386345.1:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.695G>A
  hgvsp: ENSP00000326888.5:p.Arg232Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.167G>A
  hgvsp: ENSP00000386570.1:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+837G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.608G>A
  hgvsp: ENSP00000387002.1:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2364G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.266G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.759G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg232Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-128399662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399662
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399662
    reference: chr 2
allele count: 2
allele frequency: 2.027698359592027e-5
allele num: 98634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.45C>T
  hgvsp: ENSP00000397253.1:p.Arg16Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2363C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.166C>T
  hgvsp: ENSP00000386345.1:p.Arg56Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.607C>T
  hgvsp: ENSP00000386637.2:p.Arg203Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.265C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.688C>T
  hgvsp: ENSP00000443794.2:p.Arg230Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.607C>T
  hgvsp: ENSP00000387002.1:p.Arg203Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.622C>T
  hgvsp: ENSP00000347240.4:p.Arg208Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.694C>T
  hgvsp: ENSP00000326888.5:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.166C>T
  hgvsp: ENSP00000386252.1:p.Arg56Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.166C>T
  hgvsp: ENSP00000386907.1:p.Arg56Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.607C>T
  hgvsp: ENSP00000386383.1:p.Arg203Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.758C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1010C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.166C>T
  hgvsp: ENSP00000386570.1:p.Arg56Ter
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+836C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg232Ter
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-128399663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399663
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399663
    reference: chr 2
allele count: 44
allele frequency: 4.455786446307773e-4
allele num: 98748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.621C>T
  hgvsp: ENST00000355119.4:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.687C>T
  hgvsp: ENST00000545738.2:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.606C>T
  hgvsp: ENST00000409808.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.165C>T
  hgvsp: ENST00000409286.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.44C>T
  hgvsp: ENST00000426981.1:c.44C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.165C>T
  hgvsp: ENST00000409754.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.606C>T
  hgvsp: ENST00000410011.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1009C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.165C>T
  hgvsp: ENST00000409254.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+835C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.165C>T
  hgvsp: ENST00000410038.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.264C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.606C>T
  hgvsp: ENST00000409455.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.693C>T
  hgvsp: ENST00000324938.5:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2362C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.757C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly231Gly
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

2-128399665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399665
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399665
    reference: chr 2
allele count: 6
allele frequency: 6.129704548240775e-5
allele num: 97884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.685G>A
  hgvsp: ENSP00000443794.2:p.Gly229Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+833G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.604G>A
  hgvsp: ENSP00000387002.1:p.Gly202Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.163G>A
  hgvsp: ENSP00000386907.1:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.163G>A
  hgvsp: ENSP00000386570.1:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2360G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.42G>A
  hgvsp: ENSP00000397253.1:p.Gly15Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.691G>A
  hgvsp: ENSP00000326888.5:p.Gly231Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.755G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.163G>A
  hgvsp: ENSP00000386252.1:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.262G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.604G>A
  hgvsp: ENSP00000386637.2:p.Gly202Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.619G>A
  hgvsp: ENSP00000347240.4:p.Gly207Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1007G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.163G>A
  hgvsp: ENSP00000386345.1:p.Gly55Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.604G>A
  hgvsp: ENSP00000386383.1:p.Gly202Ser
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly231Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-128399668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399668
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399668
    reference: chr 2
allele count: 8
allele frequency: 8.196049504139005e-5
allele num: 97608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.160G>A
  hgvsp: ENSP00000386345.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.601G>A
  hgvsp: ENSP00000387002.1:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.259G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.160G>A
  hgvsp: ENSP00000386570.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.39G>A
  hgvsp: ENSP00000397253.1:p.Glu14Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.682G>A
  hgvsp: ENSP00000443794.2:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2357G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.688G>A
  hgvsp: ENSP00000326888.5:p.Glu230Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.601G>A
  hgvsp: ENSP00000386637.2:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1004G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.616G>A
  hgvsp: ENSP00000347240.4:p.Glu206Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.601G>A
  hgvsp: ENSP00000386383.1:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.752G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+830G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.160G>A
  hgvsp: ENSP00000386907.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.160G>A
  hgvsp: ENSP00000386252.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu230Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

2-128399669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399669
    reference: chr 2
allele count: 1
allele frequency: 1.026546492290636e-5
allele num: 97414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.159C>T
  hgvsp: ENST00000409286.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.615C>T
  hgvsp: ENST00000355119.4:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2356C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.600C>T
  hgvsp: ENST00000409808.2:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.681C>T
  hgvsp: ENST00000545738.2:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.159C>T
  hgvsp: ENST00000409754.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+829C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.258C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.159C>T
  hgvsp: ENST00000410038.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.751C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.687C>T
  hgvsp: ENST00000324938.5:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.159C>T
  hgvsp: ENST00000409254.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.38C>T
  hgvsp: ENST00000426981.1:c.38C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.600C>T
  hgvsp: ENST00000410011.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.600C>T
  hgvsp: ENST00000409455.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.1003C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile229Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

2-128399676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399676
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399676
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 94544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.593G>A
  hgvsp: ENSP00000386637.2:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+822G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.31G>A
  hgvsp: ENSP00000397253.1:p.Arg11Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.680G>A
  hgvsp: ENSP00000326888.5:p.Arg227Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.593G>A
  hgvsp: ENSP00000387002.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.608G>A
  hgvsp: ENSP00000347240.4:p.Arg203Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.152G>A
  hgvsp: ENSP00000386345.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.152G>A
  hgvsp: ENSP00000386570.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.152G>A
  hgvsp: ENSP00000386907.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.251G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.593G>A
  hgvsp: ENSP00000386383.1:p.Arg198Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.996G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.152G>A
  hgvsp: ENSP00000386252.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.674G>A
  hgvsp: ENSP00000443794.2:p.Arg225Gln
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.744G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2349G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg227Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-128399677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399677
    reference: chr 2
allele count: 1
allele frequency: 1.053807406158451e-5
allele num: 94894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.151C>T
  hgvsp: ENSP00000386252.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.673C>T
  hgvsp: ENSP00000443794.2:p.Arg225Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.250C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.995C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.592C>T
  hgvsp: ENSP00000386383.1:p.Arg198Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.607C>T
  hgvsp: ENSP00000347240.4:p.Arg203Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.679C>T
  hgvsp: ENSP00000326888.5:p.Arg227Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.592C>T
  hgvsp: ENSP00000386637.2:p.Arg198Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.151C>T
  hgvsp: ENSP00000386570.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.151C>T
  hgvsp: ENSP00000386907.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.30C>T
  hgvsp: ENSP00000397253.1:p.Arg11Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.743C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.151C>T
  hgvsp: ENSP00000386345.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2348C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+821C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.592C>T
  hgvsp: ENSP00000387002.1:p.Arg198Trp
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg227Trp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

2-128399679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399679
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399679
    reference: chr 2
allele count: 16
allele frequency: 1.715891298286253e-4
allele num: 93246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2346G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.149G>A
  hgvsp: ENSP00000386907.1:p.Arg50His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.741G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.590G>A
  hgvsp: ENSP00000386383.1:p.Arg197His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.28G>A
  hgvsp: ENSP00000397253.1:p.Arg10His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.993G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.149G>A
  hgvsp: ENSP00000386345.1:p.Arg50His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.149G>A
  hgvsp: ENSP00000386252.1:p.Arg50His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.590G>A
  hgvsp: ENSP00000386637.2:p.Arg197His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.590G>A
  hgvsp: ENSP00000387002.1:p.Arg197His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.149G>A
  hgvsp: ENSP00000386570.1:p.Arg50His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.671G>A
  hgvsp: ENSP00000443794.2:p.Arg224His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.677G>A
  hgvsp: ENSP00000326888.5:p.Arg226His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.248G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.605G>A
  hgvsp: ENSP00000347240.4:p.Arg202His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+819G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12037
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Arg226His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-128399687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399687
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399687
    reference: chr 2
allele count: 1
allele frequency: 1.085941402601916e-5
allele num: 92086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.582G>C
  hgvsp: ENST00000409808.2:c.582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+811G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.582G>C
  hgvsp: ENST00000409455.1:c.582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.141G>C
  hgvsp: ENST00000410038.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.663G>C
  hgvsp: ENST00000545738.2:c.663G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.141G>C
  hgvsp: ENST00000409754.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.582G>C
  hgvsp: ENST00000410011.1:c.582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.141G>C
  hgvsp: ENST00000409254.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.733G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.597G>C
  hgvsp: ENST00000355119.4:c.597G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.669G>C
  hgvsp: ENST00000324938.5:c.669G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.141G>C
  hgvsp: ENST00000409286.1:c.141G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.985G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.240G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2338G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.20G>C
  hgvsp: ENST00000426981.1:c.20G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly223Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-128399689-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399689
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399689
    reference: chr 2
allele count: 1
allele frequency: 1.095554240890466e-5
allele num: 91278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.580G>C
  hgvsp: ENSP00000386637.2:p.Gly194Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.18G>C
  hgvsp: ENSP00000397253.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.580G>C
  hgvsp: ENSP00000387002.1:p.Gly194Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.667G>C
  hgvsp: ENSP00000326888.5:p.Gly223Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+809G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.139G>C
  hgvsp: ENSP00000386907.1:p.Gly47Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.139G>C
  hgvsp: ENSP00000386570.1:p.Gly47Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.580G>C
  hgvsp: ENSP00000386383.1:p.Gly194Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.139G>C
  hgvsp: ENSP00000386252.1:p.Gly47Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.661G>C
  hgvsp: ENSP00000443794.2:p.Gly221Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.595G>C
  hgvsp: ENSP00000347240.4:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.139G>C
  hgvsp: ENSP00000386345.1:p.Gly47Arg
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2336G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.983G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.731G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.238G>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly223Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-128399690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399690
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399690
    reference: chr 2
allele count: 96
allele frequency: 1.059672826014968e-3
allele num: 90594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.660C>T
  hgvsp: ENST00000545738.2:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.666C>T
  hgvsp: ENST00000324938.5:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.579C>T
  hgvsp: ENST00000409455.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+808C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.579C>T
  hgvsp: ENST00000409808.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.138C>T
  hgvsp: ENST00000409754.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.138C>T
  hgvsp: ENST00000409286.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.594C>T
  hgvsp: ENST00000355119.4:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.237C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.138C>T
  hgvsp: ENST00000410038.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.17C>T
  hgvsp: ENST00000426981.1:c.17C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.138C>T
  hgvsp: ENST00000409254.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.730C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2335C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.982C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.579C>T
  hgvsp: ENST00000410011.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11541
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13439
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Cys222Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-128399691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399691
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399691
    reference: chr 2
allele count: 1
allele frequency: 1.109360786314925e-5
allele num: 90142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.981G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.665G>T
  hgvsp: ENSP00000326888.5:p.Cys222Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.137G>T
  hgvsp: ENSP00000386907.1:p.Cys46Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.137G>T
  hgvsp: ENSP00000386570.1:p.Cys46Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.578G>T
  hgvsp: ENSP00000386637.2:p.Cys193Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.236G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.578G>T
  hgvsp: ENSP00000387002.1:p.Cys193Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.137G>T
  hgvsp: ENSP00000386252.1:p.Cys46Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.16G>T
  hgvsp: ENSP00000397253.1:p.Cys6Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.137G>T
  hgvsp: ENSP00000386345.1:p.Cys46Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2334G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.593G>T
  hgvsp: ENSP00000347240.4:p.Cys198Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.578G>T
  hgvsp: ENSP00000386383.1:p.Cys193Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.659G>T
  hgvsp: ENSP00000443794.2:p.Cys220Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+807G>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.729G>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys222Phe
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

2-128399691-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399691
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399691
    reference: chr 2
allele count: 1
allele frequency: 1.109360786314925e-5
allele num: 90142
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2334G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.578G>C
  hgvsp: ENSP00000387002.1:p.Cys193Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.137G>C
  hgvsp: ENSP00000386252.1:p.Cys46Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.236G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.729G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.137G>C
  hgvsp: ENSP00000386907.1:p.Cys46Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.137G>C
  hgvsp: ENSP00000386345.1:p.Cys46Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.578G>C
  hgvsp: ENSP00000386637.2:p.Cys193Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.659G>C
  hgvsp: ENSP00000443794.2:p.Cys220Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.578G>C
  hgvsp: ENSP00000386383.1:p.Cys193Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.137G>C
  hgvsp: ENSP00000386570.1:p.Cys46Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.665G>C
  hgvsp: ENSP00000326888.5:p.Cys222Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.981G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+807G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.593G>C
  hgvsp: ENSP00000347240.4:p.Cys198Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.16G>C
  hgvsp: ENSP00000397253.1:p.Cys6Ser
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys222Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-128399696-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399696
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399696
    reference: chr 2
allele count: 1
allele frequency: 1.120548620604648e-5
allele num: 89242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2329C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.132C>G
  hgvsp: ENST00000409754.1:c.132C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.11C>G
  hgvsp: ENST00000426981.1:c.11C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+802C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.132C>G
  hgvsp: ENST00000410038.1:c.132C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.231C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.573C>G
  hgvsp: ENST00000409455.1:c.573C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.573C>G
  hgvsp: ENST00000410011.1:c.573C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.588C>G
  hgvsp: ENST00000355119.4:c.588C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.660C>G
  hgvsp: ENST00000324938.5:c.660C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.132C>G
  hgvsp: ENST00000409286.1:c.132C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.132C>G
  hgvsp: ENST00000409254.1:c.132C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.573C>G
  hgvsp: ENST00000409808.2:c.573C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.976C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.724C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.654C>G
  hgvsp: ENST00000545738.2:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro220Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-128399697-GGGACGCCCATCTTGTCATGGCAGGGCAGGCAGTAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399697
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399661
    reference: chr 2
allele count: 1
allele frequency: 1.1237975366358e-5
allele num: 88984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsp: ENSP00000386637.2:p.Leu179_Val190del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsp: ENSP00000387002.1:p.Leu179_Val190del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsp: ENSP00000386907.1:p.Leu32_Val43del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsp: ENSP00000386383.1:p.Leu179_Val190del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsp: ENSP00000347240.4:p.Leu184_Val195del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsp: ENSP00000443794.2:p.Leu206_Val217del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsp: ENSP00000326888.5:p.Leu208_Val219del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsp: ENSP00000386345.1:p.Leu32_Val43del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsp: ENSP00000386252.1:p.Leu32_Val43del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsp: ENSP00000386570.1:p.Leu32_Val43del
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu208_Val219del
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: GGGACGCCCATCTTGTCATGGCAGGGCAGGCAGTAGA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

2-128399700-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399700
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399700
    reference: chr 2
allele count: 1
allele frequency: 1.131631359768242e-5
allele num: 88368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2325T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.227T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.531T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.569T>C
  hgvsp: ENSP00000386383.1:p.Val190Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.972T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.720T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.128T>C
  hgvsp: ENSP00000386345.1:p.Val43Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.569T>C
  hgvsp: ENSP00000386637.2:p.Val190Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.7T>C
  hgvsp: ENSP00000397253.1:p.Val3Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.650T>C
  hgvsp: ENSP00000443794.2:p.Val217Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.569T>C
  hgvsp: ENSP00000387002.1:p.Val190Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.656T>C
  hgvsp: ENSP00000326888.5:p.Val219Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.128T>C
  hgvsp: ENSP00000386907.1:p.Val43Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.128T>C
  hgvsp: ENSP00000386252.1:p.Val43Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+798T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.128T>C
  hgvsp: ENSP00000386570.1:p.Val43Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.584T>C
  hgvsp: ENSP00000347240.4:p.Val195Ala
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val219Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-128399701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399701
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399701
    reference: chr 2
allele count: 3
allele frequency: 3.416545189504373e-5
allele num: 87808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.127G>A
  hgvsp: ENSP00000386345.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2324G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.583G>A
  hgvsp: ENSP00000347240.4:p.Val195Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.568G>A
  hgvsp: ENSP00000387002.1:p.Val190Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.655G>A
  hgvsp: ENSP00000326888.5:p.Val219Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.6G>A
  hgvsp: ENSP00000397253.1:p.Val3Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.127G>A
  hgvsp: ENSP00000386252.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.530G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.971G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.127G>A
  hgvsp: ENSP00000386570.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.127G>A
  hgvsp: ENSP00000386907.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.568G>A
  hgvsp: ENSP00000386637.2:p.Val190Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.568G>A
  hgvsp: ENSP00000386383.1:p.Val190Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+797G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.226G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.649G>A
  hgvsp: ENSP00000443794.2:p.Val217Ile
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.719G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val219Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-128399702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399702
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399702
    reference: chr 2
allele count: 3
allele frequency: 3.435796417609602e-5
allele num: 87316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.567C>T
  hgvsp: ENST00000409455.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.970C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.126C>T
  hgvsp: ENST00000410038.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.648C>T
  hgvsp: ENST00000545738.2:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.5C>T
  hgvsp: ENST00000426981.1:c.5C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.567C>T
  hgvsp: ENST00000409808.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.718C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.126C>T
  hgvsp: ENST00000409754.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.567C>T
  hgvsp: ENST00000410011.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.126C>T
  hgvsp: ENST00000409286.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.582C>T
  hgvsp: ENST00000355119.4:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.654C>T
  hgvsp: ENST00000324938.5:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.126C>T
  hgvsp: ENST00000409254.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.529C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+796C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.225C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2323C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly218Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-128399703-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399703
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399703
    reference: chr 2
allele count: 1
allele frequency: 1.150853933618745e-5
allele num: 86892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.566G>C
  hgvsp: ENSP00000387002.1:p.Gly189Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.224G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000397253
  ensembl transcript: ENST00000426981
  gene symbol: LIMS2
  hgvsc: ENST00000426981.1:c.4G>C
  hgvsp: ENSP00000397253.1:p.Gly2Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.647G>C
  hgvsp: ENSP00000443794.2:p.Gly216Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.125G>C
  hgvsp: ENSP00000386570.1:p.Gly42Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2322G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.125G>C
  hgvsp: ENSP00000386345.1:p.Gly42Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.653G>C
  hgvsp: ENSP00000326888.5:p.Gly218Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.581G>C
  hgvsp: ENSP00000347240.4:p.Gly194Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.717G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.125G>C
  hgvsp: ENSP00000386907.1:p.Gly42Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.969G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.566G>C
  hgvsp: ENSP00000386383.1:p.Gly189Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.528G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.125G>C
  hgvsp: ENSP00000386252.1:p.Gly42Ala
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+795G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.566G>C
  hgvsp: ENSP00000386637.2:p.Gly189Ala
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly218Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-128399714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399714
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399714
    reference: chr 2
allele count: 4
allele frequency: 5.170898185014737e-5
allele num: 77356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.555T>C
  hgvsp: ENST00000409808.2:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.114T>C
  hgvsp: ENST00000409754.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.642T>C
  hgvsp: ENST00000324938.5:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.114T>C
  hgvsp: ENST00000410038.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.958T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.570T>C
  hgvsp: ENST00000355119.4:c.570T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.114T>C
  hgvsp: ENST00000409286.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.706T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.213T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.555T>C
  hgvsp: ENST00000409455.1:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.114T>C
  hgvsp: ENST00000409254.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.555T>C
  hgvsp: ENST00000410011.1:c.555T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.636T>C
  hgvsp: ENST00000545738.2:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+784T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2311T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.517T>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.His214His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-128399723-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399723
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399723
    reference: chr 2
allele count: 38
allele frequency: 5.847953216374269e-4
allele num: 64980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.546G>C
  hgvsp: ENST00000410011.1:c.546G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.105G>C
  hgvsp: ENST00000409754.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.105G>C
  hgvsp: ENST00000409286.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.697G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.105G>C
  hgvsp: ENST00000410038.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.546G>C
  hgvsp: ENST00000409455.1:c.546G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.627G>C
  hgvsp: ENST00000545738.2:c.627G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.105G>C
  hgvsp: ENST00000409254.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.508G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.949G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.204G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.561G>C
  hgvsp: ENST00000355119.4:c.561G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2302G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.546G>C
  hgvsp: ENST00000409808.2:c.546G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.633G>C
  hgvsp: ENST00000324938.5:c.633G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+775G>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 21017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu211Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

2-128399724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399724
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399724
    reference: chr 2
allele count: 35
allele frequency: 5.050942361532023e-4
allele num: 69294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.560T>C
  hgvsp: ENSP00000347240.4:p.Leu187Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.545T>C
  hgvsp: ENSP00000386637.2:p.Leu182Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.626T>C
  hgvsp: ENSP00000443794.2:p.Leu209Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.696T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.104T>C
  hgvsp: ENSP00000386907.1:p.Leu35Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.507T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.545T>C
  hgvsp: ENSP00000387002.1:p.Leu182Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.203T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.104T>C
  hgvsp: ENSP00000386570.1:p.Leu35Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.104T>C
  hgvsp: ENSP00000386345.1:p.Leu35Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.632T>C
  hgvsp: ENSP00000326888.5:p.Leu211Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.104T>C
  hgvsp: ENSP00000386252.1:p.Leu35Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.545T>C
  hgvsp: ENSP00000386383.1:p.Leu182Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2301T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+774T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.948T>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9912
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu211Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

2-128399729-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399729
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399728
    reference: chr 2
allele count: 1
allele frequency: 1.465759849906191e-5
allele num: 68224
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.626delA
  hgvsp: ENSP00000326888.5:p.Tyr209SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.197delA
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2295delA
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.539delA
  hgvsp: ENSP00000387002.1:p.Tyr180SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.98delA
  hgvsp: ENSP00000386570.1:p.Tyr33SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.98delA
  hgvsp: ENSP00000386345.1:p.Tyr33SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.98delA
  hgvsp: ENSP00000386907.1:p.Tyr33SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.539delA
  hgvsp: ENSP00000386637.2:p.Tyr180SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.98delA
  hgvsp: ENSP00000386252.1:p.Tyr33SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.539delA
  hgvsp: ENSP00000386383.1:p.Tyr180SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.690delA
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.942delA
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.620delA
  hgvsp: ENSP00000443794.2:p.Tyr207SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.554delA
  hgvsp: ENSP00000347240.4:p.Tyr185SerfsTer79
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+768delA
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.501delA
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr209SerfsTer79
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: GT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

2-128399734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399734
    reference: chr 2
allele count: 2
allele frequency: 3.018867924528302e-5
allele num: 66250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.535C>T
  hgvsp: ENSP00000387002.1:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.535C>T
  hgvsp: ENSP00000386637.2:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.535C>T
  hgvsp: ENSP00000386383.1:p.Leu179Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.94C>T
  hgvsp: ENSP00000386252.1:p.Leu32Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+764C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.94C>T
  hgvsp: ENSP00000386345.1:p.Leu32Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.94C>T
  hgvsp: ENSP00000386907.1:p.Leu32Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.550C>T
  hgvsp: ENSP00000347240.4:p.Leu184Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.94C>T
  hgvsp: ENSP00000386570.1:p.Leu32Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.616C>T
  hgvsp: ENSP00000443794.2:p.Leu206Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.497C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.938C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.193C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.622C>T
  hgvsp: ENSP00000326888.5:p.Leu208Phe
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.686C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2291C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu208Phe
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

2-128399735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399735
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399735
    reference: chr 2
allele count: 3
allele frequency: 4.556500607533415e-5
allele num: 65840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+763G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.534G>A
  hgvsp: ENST00000409455.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.534G>A
  hgvsp: ENST00000410011.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.615G>A
  hgvsp: ENST00000545738.2:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.93G>A
  hgvsp: ENST00000410038.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.93G>A
  hgvsp: ENST00000409754.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.93G>A
  hgvsp: ENST00000409254.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.621G>A
  hgvsp: ENST00000324938.5:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.93G>A
  hgvsp: ENST00000409286.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.937G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.534G>A
  hgvsp: ENST00000409808.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2290G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.192G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.685G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.496G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.549G>A
  hgvsp: ENST00000355119.4:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu207Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-128399736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399736
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399736
    reference: chr 2
allele count: 1
allele frequency: 1.527043948324833e-5
allele num: 65486
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.533A>G
  hgvsp: ENSP00000387002.1:p.Glu178Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.548A>G
  hgvsp: ENSP00000347240.4:p.Glu183Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.614A>G
  hgvsp: ENSP00000443794.2:p.Glu205Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.533A>G
  hgvsp: ENSP00000386383.1:p.Glu178Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.533A>G
  hgvsp: ENSP00000386637.2:p.Glu178Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.684A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.92A>G
  hgvsp: ENSP00000386907.1:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.92A>G
  hgvsp: ENSP00000386252.1:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.92A>G
  hgvsp: ENSP00000386345.1:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2289A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.495A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.92A>G
  hgvsp: ENSP00000386570.1:p.Glu31Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.620A>G
  hgvsp: ENSP00000326888.5:p.Glu207Gly
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.936A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.191A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+762A>G
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu207Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-128399737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399737
    reference: chr 2
allele count: 1
allele frequency: 1.546790409899459e-5
allele num: 64650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.547G>A
  hgvsp: ENSP00000347240.4:p.Glu183Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+761G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.619G>A
  hgvsp: ENSP00000326888.5:p.Glu207Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.494G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.91G>A
  hgvsp: ENSP00000386252.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.91G>A
  hgvsp: ENSP00000386570.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.532G>A
  hgvsp: ENSP00000387002.1:p.Glu178Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.532G>A
  hgvsp: ENSP00000386383.1:p.Glu178Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.935G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.91G>A
  hgvsp: ENSP00000386907.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.613G>A
  hgvsp: ENSP00000443794.2:p.Glu205Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.683G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2288G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.91G>A
  hgvsp: ENSP00000386345.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.190G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.532G>A
  hgvsp: ENSP00000386637.2:p.Glu178Lys
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu207Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-128399737-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399736
    reference: chr 2
allele count: 1
allele frequency: 1.546790409899459e-5
allele num: 64650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.546delT
  hgvsp: ENSP00000347240.4:p.Glu183SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.90delT
  hgvsp: ENSP00000386570.1:p.Glu31SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.612delT
  hgvsp: ENSP00000443794.2:p.Glu205SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.531delT
  hgvsp: ENSP00000387002.1:p.Glu178SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.189delT
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.90delT
  hgvsp: ENSP00000386345.1:p.Glu31SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.531delT
  hgvsp: ENSP00000386383.1:p.Glu178SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.934delT
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2287delT
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.90delT
  hgvsp: ENSP00000386252.1:p.Glu31SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.493delT
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.682delT
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.531delT
  hgvsp: ENSP00000386637.2:p.Glu178SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.618delT
  hgvsp: ENSP00000326888.5:p.Glu207SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.90delT
  hgvsp: ENSP00000386907.1:p.Glu31SerfsTer81
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+760delT
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu207SerfsTer81
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: CA
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

2-128399740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399740
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399740
    reference: chr 2
allele count: 1
allele frequency: 1.581527755812114e-5
allele num: 63230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.88G>A
  hgvsp: ENSP00000386252.1:p.Gly30Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.544G>A
  hgvsp: ENSP00000347240.4:p.Gly182Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.88G>A
  hgvsp: ENSP00000386570.1:p.Gly30Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.616G>A
  hgvsp: ENSP00000326888.5:p.Gly206Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.187G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.529G>A
  hgvsp: ENSP00000386383.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.610G>A
  hgvsp: ENSP00000443794.2:p.Gly204Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.88G>A
  hgvsp: ENSP00000386345.1:p.Gly30Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+758G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.529G>A
  hgvsp: ENSP00000387002.1:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.529G>A
  hgvsp: ENSP00000386637.2:p.Gly177Ser
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.491G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.680G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2285G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.932G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.88G>A
  hgvsp: ENSP00000386907.1:p.Gly30Ser
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly206Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-128399749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399749
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399749
    reference: chr 2
allele count: 2
allele frequency: 3.462843687235958e-5
allele num: 57756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.79G>A
  hgvsp: ENSP00000386345.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.79G>A
  hgvsp: ENSP00000386570.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.79G>A
  hgvsp: ENSP00000386252.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.79G>A
  hgvsp: ENSP00000386907.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.520G>A
  hgvsp: ENSP00000386383.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.535G>A
  hgvsp: ENSP00000347240.4:p.Glu179Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.601G>A
  hgvsp: ENSP00000443794.2:p.Glu201Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.520G>A
  hgvsp: ENSP00000387002.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.923G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.178G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.482G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.520G>A
  hgvsp: ENSP00000386637.2:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+749G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.607G>A
  hgvsp: ENSP00000326888.5:p.Glu203Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2276G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.671G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu203Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-128399750-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399750
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399750
    reference: chr 2
allele count: 1
allele frequency: 1.759510152373579e-5
allele num: 56834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.78C>A
  hgvsp: ENST00000409286.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.519C>A
  hgvsp: ENST00000410011.1:c.519C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.600C>A
  hgvsp: ENST00000545738.2:c.600C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.670C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.922C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.534C>A
  hgvsp: ENST00000355119.4:c.534C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.78C>A
  hgvsp: ENST00000409254.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.177C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+748C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.519C>A
  hgvsp: ENST00000409455.1:c.519C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.481C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2275C>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.78C>A
  hgvsp: ENST00000410038.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.606C>A
  hgvsp: ENST00000324938.5:c.606C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.519C>A
  hgvsp: ENST00000409808.2:c.519C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.78C>A
  hgvsp: ENST00000409754.1:c.78C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

2-128399750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399750
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399750
    reference: chr 2
allele count: 2
allele frequency: 3.519020304747158e-5
allele num: 56834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.78C>T
  hgvsp: ENST00000410038.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.922C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+748C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.606C>T
  hgvsp: ENST00000324938.5:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.177C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.481C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.519C>T
  hgvsp: ENST00000409808.2:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.78C>T
  hgvsp: ENST00000409286.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.78C>T
  hgvsp: ENST00000409754.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2275C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.519C>T
  hgvsp: ENST00000410011.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.78C>T
  hgvsp: ENST00000409254.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.670C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.534C>T
  hgvsp: ENST00000355119.4:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.519C>T
  hgvsp: ENST00000409455.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.600C>T
  hgvsp: ENST00000545738.2:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-128399751-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399751
    reference: chr 2
allele count: 1
allele frequency: 1.76941043244391e-5
allele num: 56516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.480G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.77G>C
  hgvsp: ENSP00000386907.1:p.Arg26Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.518G>C
  hgvsp: ENSP00000386637.2:p.Arg173Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.605G>C
  hgvsp: ENSP00000326888.5:p.Arg202Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.518G>C
  hgvsp: ENSP00000386383.1:p.Arg173Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.77G>C
  hgvsp: ENSP00000386345.1:p.Arg26Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.669G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.77G>C
  hgvsp: ENSP00000386570.1:p.Arg26Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.533G>C
  hgvsp: ENSP00000347240.4:p.Arg178Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.599G>C
  hgvsp: ENSP00000443794.2:p.Arg200Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.518G>C
  hgvsp: ENSP00000387002.1:p.Arg173Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2274G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+747G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.921G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.176G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.77G>C
  hgvsp: ENSP00000386252.1:p.Arg26Pro
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-128399751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399751
    reference: chr 2
allele count: 6
allele frequency: 1.061646259466346e-4
allele num: 56516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2274G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+747G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.518G>A
  hgvsp: ENSP00000386383.1:p.Arg173His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.77G>A
  hgvsp: ENSP00000386345.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.518G>A
  hgvsp: ENSP00000387002.1:p.Arg173His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.77G>A
  hgvsp: ENSP00000386570.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.480G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.599G>A
  hgvsp: ENSP00000443794.2:p.Arg200His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.518G>A
  hgvsp: ENSP00000386637.2:p.Arg173His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.77G>A
  hgvsp: ENSP00000386252.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.605G>A
  hgvsp: ENSP00000326888.5:p.Arg202His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.176G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.77G>A
  hgvsp: ENSP00000386907.1:p.Arg26His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.533G>A
  hgvsp: ENSP00000347240.4:p.Arg178His
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.921G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.669G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

2-128399752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399752
    reference: chr 2
allele count: 2
allele frequency: 3.54735721887194e-5
allele num: 56380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.920C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.532C>T
  hgvsp: ENSP00000347240.4:p.Arg178Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.598C>T
  hgvsp: ENSP00000443794.2:p.Arg200Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.76C>T
  hgvsp: ENSP00000386252.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.517C>T
  hgvsp: ENSP00000387002.1:p.Arg173Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+746C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.668C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.175C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.517C>T
  hgvsp: ENSP00000386383.1:p.Arg173Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.517C>T
  hgvsp: ENSP00000386637.2:p.Arg173Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.76C>T
  hgvsp: ENSP00000386345.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.76C>T
  hgvsp: ENSP00000386907.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.604C>T
  hgvsp: ENSP00000326888.5:p.Arg202Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2273C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.76C>T
  hgvsp: ENSP00000386570.1:p.Arg26Cys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.479C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg202Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ

2-128399753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399753
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399753
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 55830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.75C>T
  hgvsp: ENST00000409754.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.531C>T
  hgvsp: ENST00000355119.4:c.531C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.667C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.603C>T
  hgvsp: ENST00000324938.5:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.478C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.516C>T
  hgvsp: ENST00000410011.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2272C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.919C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.75C>T
  hgvsp: ENST00000409286.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.516C>T
  hgvsp: ENST00000409455.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.516C>T
  hgvsp: ENST00000409808.2:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.174C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.597C>T
  hgvsp: ENST00000545738.2:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.75C>T
  hgvsp: ENST00000409254.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+745C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.75C>T
  hgvsp: ENST00000410038.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala201Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-128399758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399758
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399758
    reference: chr 2
allele count: 1
allele frequency: 1.868250943466726e-5
allele num: 53526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.511G>A
  hgvsp: ENSP00000387002.1:p.Glu171Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.526G>A
  hgvsp: ENSP00000347240.4:p.Glu176Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.70G>A
  hgvsp: ENSP00000386907.1:p.Glu24Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.598G>A
  hgvsp: ENSP00000326888.5:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.70G>A
  hgvsp: ENSP00000386252.1:p.Glu24Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.511G>A
  hgvsp: ENSP00000386637.2:p.Glu171Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.70G>A
  hgvsp: ENSP00000386570.1:p.Glu24Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.592G>A
  hgvsp: ENSP00000443794.2:p.Glu198Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.70G>A
  hgvsp: ENSP00000386345.1:p.Glu24Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.914G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.511G>A
  hgvsp: ENSP00000386383.1:p.Glu171Lys
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.662G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+740G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.169G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2267G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.473G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28177
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu200Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-128399759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399759
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399759
    reference: chr 2
allele count: 1
allele frequency: 1.883451990808754e-5
allele num: 53094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.472C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.69C>T
  hgvsp: ENST00000410038.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.661C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.597C>T
  hgvsp: ENST00000324938.5:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.510C>T
  hgvsp: ENST00000409808.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+739C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.69C>T
  hgvsp: ENST00000409754.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.510C>T
  hgvsp: ENST00000409455.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.69C>T
  hgvsp: ENST00000409286.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.168C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.69C>T
  hgvsp: ENST00000409254.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.591C>T
  hgvsp: ENST00000545738.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.510C>T
  hgvsp: ENST00000410011.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.525C>T
  hgvsp: ENST00000355119.4:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.913C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2266C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala199Ala
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-128399765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399765
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399765
    reference: chr 2
allele count: 1
allele frequency: 1.970676336118556e-5
allele num: 50744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.63G>A
  hgvsp: ENST00000409286.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.466G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.504G>A
  hgvsp: ENST00000410011.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.907G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.504G>A
  hgvsp: ENST00000409808.2:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.63G>A
  hgvsp: ENST00000410038.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.585G>A
  hgvsp: ENST00000545738.2:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.162G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.655G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.519G>A
  hgvsp: ENST00000355119.4:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.504G>A
  hgvsp: ENST00000409455.1:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2260G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.63G>A
  hgvsp: ENST00000409754.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.591G>A
  hgvsp: ENST00000324938.5:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.63G>A
  hgvsp: ENST00000409254.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+733G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu197Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

2-128399766-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399766
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399766
    reference: chr 2
allele count: 1
allele frequency: 1.969977542256018e-5
allele num: 50762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.62T>C
  hgvsp: ENSP00000386907.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.62T>C
  hgvsp: ENSP00000386252.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.62T>C
  hgvsp: ENSP00000386570.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.465T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.503T>C
  hgvsp: ENSP00000387002.1:p.Leu168Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.161T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.590T>C
  hgvsp: ENSP00000326888.5:p.Leu197Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.518T>C
  hgvsp: ENSP00000347240.4:p.Leu173Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.654T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+732T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.62T>C
  hgvsp: ENSP00000386345.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.503T>C
  hgvsp: ENSP00000386383.1:p.Leu168Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.584T>C
  hgvsp: ENSP00000443794.2:p.Leu195Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2259T>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.503T>C
  hgvsp: ENSP00000386637.2:p.Leu168Pro
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.906T>C
  variant of: http://identifiers.org/hgnc/16084
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu197Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-128399786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399786
    reference: chr 2
allele count: 27
allele frequency: 6.755742381023871e-4
allele num: 39966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.141G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2239G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+712G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-12G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-12G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-128399787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399787
    reference: chr 2
allele count: 4
allele frequency: 1.00341159943809e-4
allele num: 39864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2238C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+711C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.140C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-13C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-13C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27680
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

2-128399793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399793
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399793
    reference: chr 2
allele count: 4
allele frequency: 1.17212682412237e-4
allele num: 34126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+705G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.134G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2232G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-19G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-19G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26749
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-128399802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399802
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399802
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 27022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.125C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+696C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2223C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-28C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-28C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26485
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-128399804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399804
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399804
    reference: chr 2
allele count: 1
allele frequency: 3.77415458937198e-5
allele num: 26496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2221G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.123G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+694G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-30G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-30G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

2-128399808-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399808
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399808
    reference: chr 2
allele count: 1
allele frequency: 4.047272138578598e-5
allele num: 24708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.119G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+690G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2217G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-34G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-34G>C
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

2-128399811-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399811
    reference: chr 2
allele count: 1
allele frequency: 4.411894467484338e-5
allele num: 22666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+687C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2214C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.116C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-37C>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-37C>G
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-128399817-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399817
    reference: chr 2
allele count: 3
allele frequency: 1.432117624594233e-4
allele num: 20948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2208G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+681G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.110G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-43G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-43G>C
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27853
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-128399818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128399818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128399818
    reference: chr 2
allele count: 4
allele frequency: 2.063557573256294e-4
allele num: 19384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.576-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.510-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.646-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.2207A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000484252
  gene symbol: LIMS2
  hgvsc: ENST00000484252.1:n.109A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.495-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.54-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.495-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+680A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.54-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.54-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.898-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.54-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.495-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.457-44A>G
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.582-44A>G
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28312
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-128400462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128400462
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128400462
    reference: chr 2
allele count: 3
allele frequency: 1.499550134959512e-4
allele num: 20006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.53+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.645+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.897+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.1563G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.575+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.494+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.53+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.494+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.53+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.456+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.581+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.509+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.494+36G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.53+36G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33322
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13254
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-128400463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128400463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128400463
    reference: chr 2
allele count: 1
allele frequency: 4.99151442547669e-5
allele num: 20034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.509+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.1562C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.53+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.494+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.53+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.456+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.53+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.575+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.494+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.53+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.494+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.645+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.897+35C>T
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.581+35C>T
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-128400463-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128400463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128400464
    reference: chr 2
allele count: 1
allele frequency: 4.99151442547669e-5
allele num: 20034
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.897+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.581+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.1561dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.53+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.456+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.53+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.509+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.575+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.53+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.53+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.645+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.494+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.494+34dupG
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.494+34dupG
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-128400468-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128400468
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128400468
    reference: chr 2
allele count: 2
allele frequency: 9.803921568627451e-5
allele num: 20400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.53+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.53+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.53+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.1557G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.897+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.456+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.509+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.53+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.581+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.494+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.494+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.494+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.645+30G>C
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.575+30G>C
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-128400482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128400482
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 128400482
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000469300
  gene symbol: LIMS2
  hgvsc: ENST00000469300.2:n.1543G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000476932
  gene symbol: LIMS2
  hgvsc: ENST00000476932.1:n.897+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000347240
  ensembl transcript: ENST00000355119
  gene symbol: LIMS2
  hgvsc: ENST00000355119.4:c.509+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000387002
  ensembl transcript: ENST00000410011
  gene symbol: LIMS2
  hgvsc: ENST00000410011.1:c.494+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000443794
  ensembl transcript: ENST00000545738
  gene symbol: LIMS2
  hgvsc: ENST00000545738.2:c.575+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386637
  ensembl transcript: ENST00000409808
  gene symbol: LIMS2
  hgvsc: ENST00000409808.2:c.494+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386252
  ensembl transcript: ENST00000409286
  gene symbol: LIMS2
  hgvsc: ENST00000409286.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000388611
  ensembl transcript: ENST00000413578
  gene symbol: LIMS2
  hgvsc: ENST00000413578.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000582671
  gene symbol: LIMS2
  hgvsc: ENST00000582671.1:n.456+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386570
  ensembl transcript: ENST00000410038
  gene symbol: LIMS2
  hgvsc: ENST00000410038.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl transcript: ENST00000466410
  gene symbol: LIMS2
  hgvsc: ENST00000466410.1:n.645+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386383
  ensembl transcript: ENST00000409455
  gene symbol: LIMS2
  hgvsc: ENST00000409455.1:c.494+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386907
  ensembl transcript: ENST00000409254
  gene symbol: LIMS2
  hgvsc: ENST00000409254.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000326888
  ensembl transcript: ENST00000324938
  gene symbol: LIMS2
  hgvsc: ENST00000324938.5:c.581+16G>A
  variant of: http://identifiers.org/hgnc/16084
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072163
  ensembl protein: ENSP00000386345
  ensembl transcript: ENST00000409754
  gene symbol: LIMS2
  hgvsc: ENST00000409754.1:c.53+16G>A
  variant of: http://identifiers.org/hgnc/16084
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 33893
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8536
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2043
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 9384
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4194
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37528
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.992482284809899e-5
allele num: 55602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.182224e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

VQSLOD
type: SiteQuality
SIO_000300: -1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

QD
type: SiteQuality
SIO_000300: 2.626e1

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8517
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4243
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1129
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.194244604316547e-5
allele num: 13900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55686
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.181802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 2.013e0

QD
type: SiteQuality
SIO_000300: 9.19e0

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.145e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

GenotypeDepth
all individuals: 33530
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2146
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1209
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.19010641357492e-5
allele num: 13908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 1.725e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.01e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 1.181748e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeDepth
all individuals: 1209
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 239
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4413
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9307
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8611
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.19010641357492e-5
allele num: 13908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.977305372019535e-5
allele num: 55696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.288659793814433e-4
allele num: 7760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.181748e6

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 1.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.01e1

GenotypeDepth
all individuals: 4547
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9306
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 22
bin: 6.75e1
variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

African
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allele count: 5
allele frequency: 6.449948400412797e-4
allele num: 7752
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.256461803561172e-4
allele num: 55712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.180027e6

VQSLOD
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

ClippingRankSum
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
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QD
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SIO_000300: 1.181e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.383869925702595e-5
allele num: 55722
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.004811547714515e-4
allele num: 9976
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4842
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 1.87e-1

DP
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SIO_000300: 1.178721e6

BaseQRankSum
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MQRankSum
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SIO_000300: 3.22e-1

QD
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SIO_000300: 1.248e1

ReadPosRankSum
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SIO_000300: -7.45e-1

ClippingRankSum
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SIO_000300: 1.81e-1

InbreedingCoeff
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SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4828
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 7.178493234270127e-5
allele num: 55722
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 6.441638752898738e-4
allele num: 7762
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.5e-3

MQRankSum
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MQ
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

FS
type: SiteQuality
SIO_000300: 3.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.425739709180352e-5
allele num: 55292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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QD
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MQ
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DP
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.35e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 9.095634095634096e-4
allele num: 7696
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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allele count: 0
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South Asian
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allele count: 0
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FS
type: SiteQuality
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 3
allele frequency: 3.052503052503053e-4
allele num: 9828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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Other
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VQSLOD
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FS
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 5.520504731861199e-3
allele num: 7608
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Latino
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African
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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SIO_000300: 3.8e-1

VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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DP
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Latino
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African
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allele num: 7510
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FS
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VQSLOD
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 54030
num of homozygotes: 0

South Asian
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Latino
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Other
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East Asian
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African
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European (Finnish)
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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VQSLOD
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52126
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
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FS
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SIO_000300: 7.619e0

ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 13504
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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MQ
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SIO_000300: 5.912e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.082735e6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.402131239484016e-4
allele num: 7132
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.344116268166901e-4
allele num: 4266
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.722993737114405e-4
allele num: 51414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

BaseQRankSum
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MQRankSum
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FS
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SIO_000300: 4.148e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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SIO_000300: 1.060787e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 50782
num of homozygotes: 0

Other
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South Asian
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East Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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SIO_000300: -2.03e-1

ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 94

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

Latino
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allele frequency: 6.743088334457181e-4
allele num: 8898
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East Asian
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South Asian
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European (Non-Finnish)
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allele count: 14
allele frequency: 2.802915031632898e-4
allele num: 49948
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African
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allele frequency: 1.041080472706809e-2
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Other
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Latino
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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QD
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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MQRankSum
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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MQ
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VQSLOD
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DP
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QD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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VQSLOD
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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FS
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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MQ
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QD
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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FS
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QD
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31360
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.333582228859437e-5
allele num: 10714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.178e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 7.90352e5

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.366812227074236e-3
allele num: 458
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.738e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 7.71944e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.79e-1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 209
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.157635467980296e-4
allele num: 4872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

DP
type: SiteQuality
SIO_000300: 7.69011e5

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 1.095e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeDepth
all individuals: 24267
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8748
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variant carriers: 0

GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 1

GenotypeQuality
all individuals: 33043
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.066115702479339e-4
allele num: 4840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

VQSLOD
type: SiteQuality
SIO_000300: -1.792e0

DP
type: SiteQuality
SIO_000300: 7.64107e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.362e0

QD
type: SiteQuality
SIO_000300: 9.93e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9005
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.795795124133303e-5
allele num: 35768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

DP
type: SiteQuality
SIO_000300: 7.56177e5

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeDepth
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 116
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.70590242238144e-4
allele num: 5862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.56177e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 2.325581395348837e-3
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num of homozygotes: 0

South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Latino
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East Asian
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MQ
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QD
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Latino
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Other
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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South Asian
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ClippingRankSum
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QD
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FS
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.897653235498767e-4
allele num: 31618
num of homozygotes: 0

ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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SIO_000300: 5.917e1

QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 31474
num of homozygotes: 0

East Asian
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African
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31192
num of homozygotes: 0

South Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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MQ
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FS
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ClippingRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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FS
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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European (Non-Finnish)
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Other
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African
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Latino
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East Asian
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South Asian
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.483592280359507e-5
allele num: 28706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.739e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.36e0

QD
type: SiteQuality
SIO_000300: 9.35e0

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

FS
type: SiteQuality
SIO_000300: 2.027e0

DP
type: SiteQuality
SIO_000300: 6.44141e5

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
all individuals: 1800
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.310716441072506e-5
allele num: 23198
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 2.424830261881668e-3
allele num: 4124
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 4.188481675392671e-3
allele num: 3820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.55794e5

FS
type: SiteQuality
SIO_000300: 3.203e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.646903123345686e-4
allele num: 3778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.299826689774697e-4
allele num: 23080
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 5.54148e5

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 2.076e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.493e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.029675082989639e-5
allele num: 19882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.751937984496124e-4
allele num: 3870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.376e1

FS
type: SiteQuality
SIO_000300: 1.478e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -3.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 5.14173e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15928
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.069e-1

MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
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allele num: 3384
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 5.274261603375527e-4
allele num: 1896
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
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SIO_000300: -3.89e-2

FS
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SIO_000300: 3.522e0

QD
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VQSLOD
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SIO_000300: 9.7e-2

MQ
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ReadPosRankSum
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SIO_000300: 6.76e-1

ClippingRankSum
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SIO_000300: 1.03e-1

MQRankSum
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3108
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 5.733944954128441e-4
allele num: 1744
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.343e1

ReadPosRankSum
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SIO_000300: 6.6e-1

MQRankSum
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FS
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BaseQRankSum
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SIO_000300: -5.55e-1

InbreedingCoeff
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SIO_000300: -4.06e-2

DP
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -5.55e-1

VQSLOD
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SIO_000300: 1.3e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 2.4092515258593e-4
allele num: 12452
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
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SIO_000300: 4.9e0

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
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SIO_000300: 4.25933e5

MQRankSum
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

BaseQRankSum
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SIO_000300: -1.581e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 3.464403256539061e-4
allele num: 11546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1388
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1400
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2862
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-2

BaseQRankSum
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FS
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SIO_000300: 1.431e0

VQSLOD
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SIO_000300: 1.38e0

MQRankSum
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SIO_000300: 5.46e-1

DP
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SIO_000300: 4.21594e5

QD
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SIO_000300: 1.042e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 3.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.267059623668102e-4
allele num: 8822
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.599712023038157e-4
allele num: 2778
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6914
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -5.73e-2

VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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MQRankSum
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QD
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DP
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ReadPosRankSum
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SIO_000300: 3.65e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.437194596148318e-4
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.134044000907235e-4
allele num: 8818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.74e-2

FS
type: SiteQuality
SIO_000300: 2.064e0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 4.4354e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeDepth
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 658
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 103
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29076
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3685
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.808199943836001e-4
allele num: 7122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.53e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

DP
type: SiteQuality
SIO_000300: 4.58805e5