http://identifiers.org/exac.variant/3-172480175-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
allele count: 42
allele frequency: 1.074388621712882e-3
allele num: 39092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-31C>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-31C>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-31C>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-31C>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-31C>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-31C>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7422
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 8
num of homozygotes: 10
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-172480175-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480176
    reference: chr 3
allele count: 35
allele frequency: 8.953238514274021e-4
allele num: 39092
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-31_666-30insA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-31_759-30insA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-31_666-30insA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-31_663-30insA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-31_666-30insA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-31_759-30insA
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 11
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

3-172480175-C-CTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480178
    reference: chr 3
allele count: 6
allele frequency: 1.534840888161261e-4
allele num: 39092
alternate allele: CTTG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-30_759-29insTGT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-30_666-29insTGT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-30_759-29insTGT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-30_666-29insTGT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-30_666-29insTGT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-30_663-29insTGT
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 2
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

3-172480175-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480178
    reference: chr 3
allele count: 3
allele frequency: 7.674204440806303e-5
allele num: 39092
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-30_759-29insTTT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-30_666-29insTTT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-30_663-29insTTT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-30_759-29insTTT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-30_666-29insTTT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-30_666-29insTTT
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-172480175-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480174
    reference: chr 3
allele count: 2
allele frequency: 5.116136293870869e-5
allele num: 39092
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-30delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-30delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-30delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-30delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-30delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-30delT
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: CT
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-172480176-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480176
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480175
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 75354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-28delG
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-28delG
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-28delG
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-28delG
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-28delG
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-28delG
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7672
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: TG
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-172480178-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480178
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480177
    reference: chr 3
allele count: 2
allele frequency: 2.037988098149507e-5
allele num: 98136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-24delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-24delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-24delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-24delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-24delT
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-24delT
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: GT
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-172480181-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480181
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480181
    reference: chr 3
allele count: 284
allele frequency: 2.727569581836692e-3
allele num: 104122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-25T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-25T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-25T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-25T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-25T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-25T>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 7.5e0
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 1.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 2.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6354
  bin: 9.75e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 22495
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.75e1
  variant carriers: 7
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-172480184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480184
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480184
    reference: chr 3
allele count: 1
allele frequency: 9.488206159743439e-6
allele num: 105394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-22G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-22G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-22G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-22G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-22G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-22G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

3-172480188-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480188
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480188
    reference: chr 3
allele count: 2
allele frequency: 1.839317245438493e-5
allele num: 108736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-18A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

3-172480188-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480188
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480188
    reference: chr 3
allele count: 1
allele frequency: 9.196586227192466e-6
allele num: 108736
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-18A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-18A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-18A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-18A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-18A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-18A>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

3-172480189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480189
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480189
    reference: chr 3
allele count: 1
allele frequency: 9.097359946143629e-6
allele num: 109922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-17G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-17G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-17G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-17G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-17G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-17G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-172480190-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480190
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480190
    reference: chr 3
allele count: 3
allele frequency: 2.711496746203904e-5
allele num: 110640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-16T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-16T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-16T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-16T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-16T>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-16T>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-172480191-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480191
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480191
    reference: chr 3
allele count: 19
allele frequency: 1.704402741397251e-4
allele num: 111476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-15G>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-15G>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-15G>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-15G>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-15G>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-15G>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum

3-172480199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480199
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480199
    reference: chr 3
allele count: 1
allele frequency: 8.542773667754446e-6
allele num: 117058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-7T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-7T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-7T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-7T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-7T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-7T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 6.75e1
  variant carriers: 0
hgvs: c.759-7T>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-172480203-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480203
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480203
    reference: chr 3
allele count: 1
allele frequency: 8.433267553846413e-6
allele num: 118578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.666-3T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.666-3T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.759-3T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.666-3T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.759-3T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.663-3T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
hgvs: c.759-3T>C
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-172480214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480214
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480214
    reference: chr 3
allele count: 280
allele frequency: 2.328947149535042e-3
allele num: 120226
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.767A>G
  hgvsp: ENSP00000376457.3:p.Tyr256Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.674A>G
  hgvsp: ENSP00000232458.5:p.Tyr225Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.674A>G
  hgvsp: ENSP00000412259.2:p.Tyr225Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.767A>G
  hgvsp: ENSP00000443160.1:p.Tyr256Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.671A>G
  hgvsp: ENSP00000415876.1:p.Tyr224Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.674A>G
  hgvsp: ENSP00000401910.1:p.Tyr225Cys
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22840
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19703
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 36834
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 9.75e1
  variant carriers: 271
hgvs: p.Tyr256Cys
num of homozygotes: 6
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-172480219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480219
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480219
    reference: chr 3
allele count: 2
allele frequency: 1.659916340216453e-5
allele num: 120488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.679G>A
  hgvsp: ENSP00000232458.5:p.Ala227Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.772G>A
  hgvsp: ENSP00000376457.3:p.Ala258Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.772G>A
  hgvsp: ENSP00000443160.1:p.Ala258Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.679G>A
  hgvsp: ENSP00000412259.2:p.Ala227Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.679G>A
  hgvsp: ENSP00000401910.1:p.Ala227Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.676G>A
  hgvsp: ENSP00000415876.1:p.Ala226Thr
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6104
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala258Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-172480219-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480219
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480219
    reference: chr 3
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.679G>T
  hgvsp: ENSP00000232458.5:p.Ala227Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.772G>T
  hgvsp: ENSP00000376457.3:p.Ala258Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.676G>T
  hgvsp: ENSP00000415876.1:p.Ala226Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.679G>T
  hgvsp: ENSP00000412259.2:p.Ala227Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.679G>T
  hgvsp: ENSP00000401910.1:p.Ala227Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.772G>T
  hgvsp: ENSP00000443160.1:p.Ala258Ser
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala258Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

3-172480225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480225
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480225
    reference: chr 3
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.685G>A
  hgvsp: ENSP00000232458.5:p.Asp229Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.682G>A
  hgvsp: ENSP00000415876.1:p.Asp228Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.685G>A
  hgvsp: ENSP00000401910.1:p.Asp229Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.685G>A
  hgvsp: ENSP00000412259.2:p.Asp229Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.778G>A
  hgvsp: ENSP00000443160.1:p.Asp260Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.778G>A
  hgvsp: ENSP00000376457.3:p.Asp260Asn
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp260Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

3-172480229-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480229
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480229
    reference: chr 3
allele count: 3
allele frequency: 2.483197033407277e-5
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.782A>G
  hgvsp: ENSP00000376457.3:p.Asp261Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.782A>G
  hgvsp: ENSP00000443160.1:p.Asp261Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.689A>G
  hgvsp: ENSP00000401910.1:p.Asp230Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.689A>G
  hgvsp: ENSP00000232458.5:p.Asp230Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.686A>G
  hgvsp: ENSP00000415876.1:p.Asp229Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.689A>G
  hgvsp: ENSP00000412259.2:p.Asp230Gly
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp261Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-172480233-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480233
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480233
    reference: chr 3
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.786T>C
  hgvsp: ENST00000392692.3:c.786T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.693T>C
  hgvsp: ENST00000441497.2:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.693T>C
  hgvsp: ENST00000232458.5:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.693T>C
  hgvsp: ENST00000427830.1:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.690T>C
  hgvsp: ENST00000417960.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.786T>C
  hgvsp: ENST00000540509.1:c.786T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe262Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

3-172480234-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480234
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480234
    reference: chr 3
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.787A>G
  hgvsp: ENSP00000376457.3:p.Arg263Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.787A>G
  hgvsp: ENSP00000443160.1:p.Arg263Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.691A>G
  hgvsp: ENSP00000415876.1:p.Arg231Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.694A>G
  hgvsp: ENSP00000232458.5:p.Arg232Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.694A>G
  hgvsp: ENSP00000412259.2:p.Arg232Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.694A>G
  hgvsp: ENSP00000401910.1:p.Arg232Gly
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg263Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-172480245-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480245
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480245
    reference: chr 3
allele count: 3
allele frequency: 2.481923325115409e-5
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.705T>G
  hgvsp: ENSP00000232458.5:p.Phe235Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.798T>G
  hgvsp: ENSP00000443160.1:p.Phe266Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.705T>G
  hgvsp: ENSP00000401910.1:p.Phe235Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.705T>G
  hgvsp: ENSP00000412259.2:p.Phe235Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.702T>G
  hgvsp: ENSP00000415876.1:p.Phe234Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.798T>G
  hgvsp: ENSP00000376457.3:p.Phe266Leu
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6103
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe266Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

3-172480249-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480249
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480249
    reference: chr 3
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.709G>C
  hgvsp: ENSP00000232458.5:p.Val237Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.709G>C
  hgvsp: ENSP00000412259.2:p.Val237Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.709G>C
  hgvsp: ENSP00000401910.1:p.Val237Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.802G>C
  hgvsp: ENSP00000376457.3:p.Val268Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.706G>C
  hgvsp: ENSP00000415876.1:p.Val236Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.802G>C
  hgvsp: ENSP00000443160.1:p.Val268Leu
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val268Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

3-172480270-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480270
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480270
    reference: chr 3
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.823A>T
  hgvsp: ENSP00000443160.1:p.Ile275Phe
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.730A>T
  hgvsp: ENSP00000232458.5:p.Ile244Phe
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.730A>T
  hgvsp: ENSP00000412259.2:p.Ile244Phe
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.823A>T
  hgvsp: ENSP00000376457.3:p.Ile275Phe
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.727A>T
  hgvsp: ENSP00000415876.1:p.Ile243Phe
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.730A>T
  hgvsp: ENSP00000401910.1:p.Ile244Phe
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile275Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-172480272-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480272
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480272
    reference: chr 3
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.732T>G
  hgvsp: ENSP00000232458.5:p.Ile244Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.729T>G
  hgvsp: ENSP00000415876.1:p.Ile243Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.825T>G
  hgvsp: ENSP00000376457.3:p.Ile275Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.732T>G
  hgvsp: ENSP00000401910.1:p.Ile244Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.732T>G
  hgvsp: ENSP00000412259.2:p.Ile244Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.825T>G
  hgvsp: ENSP00000443160.1:p.Ile275Met
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile275Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-172480277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480277
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480277
    reference: chr 3
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.830G>A
  hgvsp: ENSP00000443160.1:p.Ser277Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.830G>A
  hgvsp: ENSP00000376457.3:p.Ser277Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.734G>A
  hgvsp: ENSP00000415876.1:p.Ser245Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.737G>A
  hgvsp: ENSP00000232458.5:p.Ser246Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.737G>A
  hgvsp: ENSP00000412259.2:p.Ser246Asn
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.737G>A
  hgvsp: ENSP00000401910.1:p.Ser246Asn
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6101
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser277Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

3-172480287-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480287
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480287
    reference: chr 3
allele count: 1
allele frequency: 8.299306178003518e-6
allele num: 120492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.747A>G
  hgvsp: ENST00000232458.5:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.747A>G
  hgvsp: ENST00000427830.1:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.840A>G
  hgvsp: ENST00000540509.1:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.744A>G
  hgvsp: ENST00000417960.1:c.744A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.840A>G
  hgvsp: ENST00000392692.3:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.747A>G
  hgvsp: ENST00000441497.2:c.747A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly280Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-172480295-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480295
    reference: chr 3
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.752A>G
  hgvsp: ENSP00000415876.1:p.Asp251Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.755A>G
  hgvsp: ENSP00000412259.2:p.Asp252Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.755A>G
  hgvsp: ENSP00000401910.1:p.Asp252Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.848A>G
  hgvsp: ENSP00000443160.1:p.Asp283Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.755A>G
  hgvsp: ENSP00000232458.5:p.Asp252Gly
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.848A>G
  hgvsp: ENSP00000376457.3:p.Asp283Gly
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp283Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-172480331-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480331
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480331
    reference: chr 3
allele count: 1
allele frequency: 8.417933565668301e-6
allele num: 118794
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.884T>C
  hgvsp: ENSP00000376457.3:p.Met295Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.884T>C
  hgvsp: ENSP00000443160.1:p.Met295Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.791T>C
  hgvsp: ENSP00000401910.1:p.Met264Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.791T>C
  hgvsp: ENSP00000412259.2:p.Met264Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.788T>C
  hgvsp: ENSP00000415876.1:p.Met263Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.791T>C
  hgvsp: ENSP00000232458.5:p.Met264Thr
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met295Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

3-172480339-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480339
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480339
    reference: chr 3
allele count: 1
allele frequency: 8.462098261885017e-6
allele num: 118174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+3A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+3A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+3A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+3A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+3A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+3A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
hgvs: c.889+3A>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

3-172480345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480345
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480345
    reference: chr 3
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+9T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+9T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+9T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+9T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+9T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+9T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18030
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

3-172480350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480350
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480350
    reference: chr 3
allele count: 1
allele frequency: 8.517307168165713e-6
allele num: 117408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+14T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+14T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+14T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+14T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+14T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+14T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6084
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-172480360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480360
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480360
    reference: chr 3
allele count: 2
allele frequency: 1.713590486145621e-5
allele num: 116714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+24G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+24G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+24G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+24G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+24G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+24G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

3-172480369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480369
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480369
    reference: chr 3
allele count: 1
allele frequency: 8.618609301203158e-6
allele num: 116028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+33A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+33A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+33A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+33A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+33A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+33A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 4836
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

3-172480377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480377
    reference: chr 3
allele count: 2
allele frequency: 1.738979219198331e-5
allele num: 115010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+41C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+41C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+41C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+41C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+41C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+41C>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4351
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genotype quality: GenotypeQuality
  all individuals: 456
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6079
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
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genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 368
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

3-172480379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480379
    reference: chr 3
allele count: 1
allele frequency: 8.715508375603548e-6
allele num: 114738
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+43C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+43C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+43C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+43C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+43C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+43C>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 421
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3797
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genotype quality: GenotypeQuality
  all individuals: 683
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/3-172480381-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480381
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480381
    reference: chr 3
allele count: 3
allele frequency: 2.609149417289963e-5
allele num: 114980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+45A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+45A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+45A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+45A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+45A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+45A>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4421
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4322
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-172480383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480383
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480383
    reference: chr 3
allele count: 2
allele frequency: 1.743800788197956e-5
allele num: 114692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+47G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+47G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+47G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+47G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+47G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+47G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16943
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-172480384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480384
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480384
    reference: chr 3
allele count: 3
allele frequency: 2.619950046285784e-5
allele num: 114506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+48C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+48C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+48C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+48C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+48C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+48C>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6083
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

3-172480387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480387
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480387
    reference: chr 3
allele count: 1
allele frequency: 8.738967054094206e-6
allele num: 114430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.796+51G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.793+51G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.889+51G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.796+51G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.889+51G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.796+51G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17376
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

3-172480437-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480437
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480437
    reference: chr 3
allele count: 2
allele frequency: 1.713443679106268e-5
allele num: 116724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.797-44A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.890-44A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.890-44A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.794-44A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.797-44A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.797-44A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/3-172480453-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480453
    reference: chr 3
allele count: 465
allele frequency: 3.961560087921075e-3
allele num: 117378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.797-28A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.890-28A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.797-28A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.890-28A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.794-28A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.797-28A>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 2.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29703
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 2
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-172480458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480458
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480458
    reference: chr 3
allele count: 2
allele frequency: 1.698398410299088e-5
allele num: 117758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.797-23T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.794-23T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.797-23T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.797-23T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.890-23T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.890-23T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17316
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

3-172480463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480463
    reference: chr 3
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.890-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.890-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.794-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.797-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.797-18A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.797-18A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-172480487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480487
    reference: chr 3
allele count: 1
allele frequency: 8.336668000533546e-6
allele num: 119952
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.803A>C
  hgvsp: ENSP00000401910.1:p.Lys268Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.896A>C
  hgvsp: ENSP00000376457.3:p.Lys299Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.803A>C
  hgvsp: ENSP00000412259.2:p.Lys268Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.896A>C
  hgvsp: ENSP00000443160.1:p.Lys299Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.803A>C
  hgvsp: ENSP00000232458.5:p.Lys268Thr
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.800A>C
  hgvsp: ENSP00000415876.1:p.Lys267Thr
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys299Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

3-172480495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480495
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480495
    reference: chr 3
allele count: 1
allele frequency: 8.315593400745077e-6
allele num: 120256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.904C>T
  hgvsp: ENSP00000376457.3:p.Pro302Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.811C>T
  hgvsp: ENSP00000232458.5:p.Pro271Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.904C>T
  hgvsp: ENSP00000443160.1:p.Pro302Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.811C>T
  hgvsp: ENSP00000401910.1:p.Pro271Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.811C>T
  hgvsp: ENSP00000412259.2:p.Pro271Ser
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.808C>T
  hgvsp: ENSP00000415876.1:p.Pro270Ser
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38232
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro302Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

3-172480496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480496
    reference: chr 3
allele count: 2
allele frequency: 1.662565671344018e-5
allele num: 120296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.809C>T
  hgvsp: ENSP00000415876.1:p.Pro270Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.812C>T
  hgvsp: ENSP00000412259.2:p.Pro271Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.812C>T
  hgvsp: ENSP00000401910.1:p.Pro271Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.812C>T
  hgvsp: ENSP00000232458.5:p.Pro271Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.905C>T
  hgvsp: ENSP00000376457.3:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.905C>T
  hgvsp: ENSP00000443160.1:p.Pro302Leu
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro302Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-172480497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480497
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480497
    reference: chr 3
allele count: 26
allele frequency: 2.160293799956794e-4
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.906G>A
  hgvsp: ENST00000392692.3:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.810G>A
  hgvsp: ENST00000417960.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.813G>A
  hgvsp: ENST00000441497.2:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.813G>A
  hgvsp: ENST00000232458.5:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.906G>A
  hgvsp: ENST00000540509.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.813G>A
  hgvsp: ENST00000427830.1:c.813G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro302Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-172480504-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480504
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480504
    reference: chr 3
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.913G>C
  hgvsp: ENSP00000443160.1:p.Asp305His
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.820G>C
  hgvsp: ENSP00000232458.5:p.Asp274His
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.820G>C
  hgvsp: ENSP00000401910.1:p.Asp274His
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.817G>C
  hgvsp: ENSP00000415876.1:p.Asp273His
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.913G>C
  hgvsp: ENSP00000376457.3:p.Asp305His
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.820G>C
  hgvsp: ENSP00000412259.2:p.Asp274His
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38491
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp305His
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/3-172480505-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480505
    reference: chr 3
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.821A>C
  hgvsp: ENSP00000401910.1:p.Asp274Ala
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.818A>C
  hgvsp: ENSP00000415876.1:p.Asp273Ala
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.914A>C
  hgvsp: ENSP00000443160.1:p.Asp305Ala
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.821A>C
  hgvsp: ENSP00000412259.2:p.Asp274Ala
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.821A>C
  hgvsp: ENSP00000232458.5:p.Asp274Ala
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.914A>C
  hgvsp: ENSP00000376457.3:p.Asp305Ala
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7268
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp305Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

3-172480509-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480509
    reference: chr 3
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.825A>G
  hgvsp: ENST00000441497.2:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.822A>G
  hgvsp: ENST00000417960.1:c.822A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.918A>G
  hgvsp: ENST00000392692.3:c.918A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.825A>G
  hgvsp: ENST00000232458.5:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.825A>G
  hgvsp: ENST00000427830.1:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.918A>G
  hgvsp: ENST00000540509.1:c.918A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu306Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

3-172480522-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480522
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480522
    reference: chr 3
allele count: 2
allele frequency: 1.656424442199069e-5
allele num: 120742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.931C>G
  hgvsp: ENSP00000443160.1:p.Leu311Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.838C>G
  hgvsp: ENSP00000401910.1:p.Leu280Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.835C>G
  hgvsp: ENSP00000415876.1:p.Leu279Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.838C>G
  hgvsp: ENSP00000412259.2:p.Leu280Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.838C>G
  hgvsp: ENSP00000232458.5:p.Leu280Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.931C>G
  hgvsp: ENSP00000376457.3:p.Leu311Val
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7270
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38685
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu311Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-172480534-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480534
    reference: chr 3
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.943G>C
  hgvsp: ENSP00000443160.1:p.Glu315Gln
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.850G>C
  hgvsp: ENSP00000412259.2:p.Glu284Gln
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.850G>C
  hgvsp: ENSP00000232458.5:p.Glu284Gln
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.943G>C
  hgvsp: ENSP00000376457.3:p.Glu315Gln
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.847G>C
  hgvsp: ENSP00000415876.1:p.Glu283Gln
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.850G>C
  hgvsp: ENSP00000401910.1:p.Glu284Gln
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu315Gln
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

3-172480536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480536
    reference: chr 3
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.849G>C
  hgvsp: ENSP00000415876.1:p.Glu283Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.945G>C
  hgvsp: ENSP00000443160.1:p.Glu315Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.852G>C
  hgvsp: ENSP00000412259.2:p.Glu284Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.945G>C
  hgvsp: ENSP00000376457.3:p.Glu315Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.852G>C
  hgvsp: ENSP00000401910.1:p.Glu284Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.852G>C
  hgvsp: ENSP00000232458.5:p.Glu284Asp
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7267
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu315Asp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-172480542-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480542
    reference: chr 3
allele count: 5
allele frequency: 4.138661722345462e-5
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.858A>G
  hgvsp: ENSP00000412259.2:p.Ile286Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.858A>G
  hgvsp: ENSP00000232458.5:p.Ile286Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.951A>G
  hgvsp: ENSP00000376457.3:p.Ile317Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.951A>G
  hgvsp: ENSP00000443160.1:p.Ile317Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.858A>G
  hgvsp: ENSP00000401910.1:p.Ile286Met
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.855A>G
  hgvsp: ENSP00000415876.1:p.Ile285Met
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile317Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-172480546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480546
    reference: chr 3
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.862A>G
  hgvsp: ENSP00000401910.1:p.Lys288Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.955A>G
  hgvsp: ENSP00000443160.1:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.862A>G
  hgvsp: ENSP00000232458.5:p.Lys288Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.859A>G
  hgvsp: ENSP00000415876.1:p.Lys287Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.955A>G
  hgvsp: ENSP00000376457.3:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.862A>G
  hgvsp: ENSP00000412259.2:p.Lys288Glu
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6688
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys319Glu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

3-172480547-A-AAGATCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480547
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480553
    reference: chr 3
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: AAGATCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.861_866dupAGATCT
  hgvsp: ENSP00000415876.1:p.Asp288_Leu289dup
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.957_962dupAGATCT
  hgvsp: ENSP00000443160.1:p.Asp320_Leu321dup
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.864_869dupAGATCT
  hgvsp: ENSP00000232458.5:p.Asp289_Leu290dup
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.864_869dupAGATCT
  hgvsp: ENSP00000412259.2:p.Asp289_Leu290dup
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.864_869dupAGATCT
  hgvsp: ENSP00000401910.1:p.Asp289_Leu290dup
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.957_962dupAGATCT
  hgvsp: ENSP00000376457.3:p.Asp320_Leu321dup
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp320_Leu321dup
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-172480551-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480551
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480551
    reference: chr 3
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.960T>A
  hgvsp: ENSP00000443160.1:p.Asp320Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.867T>A
  hgvsp: ENSP00000232458.5:p.Asp289Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.867T>A
  hgvsp: ENSP00000401910.1:p.Asp289Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.867T>A
  hgvsp: ENSP00000412259.2:p.Asp289Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.960T>A
  hgvsp: ENSP00000376457.3:p.Asp320Glu
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.864T>A
  hgvsp: ENSP00000415876.1:p.Asp288Glu
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp320Glu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

3-172480558-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480558
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480558
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.967T>G
  hgvsp: ENSP00000376457.3:p.Phe323Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.874T>G
  hgvsp: ENSP00000401910.1:p.Phe292Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.874T>G
  hgvsp: ENSP00000232458.5:p.Phe292Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.874T>G
  hgvsp: ENSP00000412259.2:p.Phe292Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.967T>G
  hgvsp: ENSP00000443160.1:p.Phe323Val
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.871T>G
  hgvsp: ENSP00000415876.1:p.Phe291Val
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe323Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-172480563-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480563
    reference: chr 3
allele count: 4
allele frequency: 3.31356241094801e-5
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.879A>T
  hgvsp: ENSP00000401910.1:p.Glu293Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.972A>T
  hgvsp: ENSP00000376457.3:p.Glu324Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.879A>T
  hgvsp: ENSP00000232458.5:p.Glu293Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.879A>T
  hgvsp: ENSP00000412259.2:p.Glu293Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.972A>T
  hgvsp: ENSP00000443160.1:p.Glu324Asp
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.876A>T
  hgvsp: ENSP00000415876.1:p.Glu292Asp
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38184
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu324Asp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-172480566-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480566
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480566
    reference: chr 3
allele count: 5
allele frequency: 4.142502071251036e-5
allele num: 120700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.882T>A
  hgvsp: ENST00000441497.2:c.882T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.879T>A
  hgvsp: ENST00000417960.1:c.879T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.975T>A
  hgvsp: ENST00000392692.3:c.975T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.975T>A
  hgvsp: ENST00000540509.1:c.975T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.882T>A
  hgvsp: ENST00000232458.5:c.882T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.882T>A
  hgvsp: ENST00000427830.1:c.882T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24873
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38137
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro325Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-172480580-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480580
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480580
    reference: chr 3
allele count: 17
allele frequency: 1.410577673044691e-4
allele num: 120518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.893A>G
  hgvsp: ENSP00000415876.1:p.Tyr298Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.896A>G
  hgvsp: ENSP00000232458.5:p.Tyr299Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.989A>G
  hgvsp: ENSP00000376457.3:p.Tyr330Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.4A>G
  hgvsp: ENSP00000411674.1:p.Tyr2Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.896A>G
  hgvsp: ENSP00000401910.1:p.Tyr299Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.896A>G
  hgvsp: ENSP00000412259.2:p.Tyr299Cys
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.989A>G
  hgvsp: ENSP00000443160.1:p.Tyr330Cys
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19584
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr330Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-172480614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480614
    reference: chr 3
allele count: 1
allele frequency: 8.362882183715796e-6
allele num: 119576
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+18G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+18G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-172480617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480617
    reference: chr 3
allele count: 1
allele frequency: 8.366100560528738e-6
allele num: 119530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+21G>A
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+21G>A
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18483
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-172480618-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480618
    reference: chr 3
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+22T>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+22T>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7259
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-172480627-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480627
    reference: chr 3
allele count: 1
allele frequency: 8.390106386548982e-6
allele num: 119188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+31A>C
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+31A>C
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-172480636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480636
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480636
    reference: chr 3
allele count: 13
allele frequency: 1.091703056768559e-4
allele num: 119080
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+40A>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+40A>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18460
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7266
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

3-172480638-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480638
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480640
    reference: chr 3
allele count: 1
allele frequency: 8.403361344537815e-6
allele num: 119000
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+43_20+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+43_912+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+43_912+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+43_1005+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+43_912+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+43_1005+44dupAA
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+43_909+44dupAA
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-172480647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480647
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480647
    reference: chr 3
allele count: 2
allele frequency: 1.681096074640666e-5
allele num: 118970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.912+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.20+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.912+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1005+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1005+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.912+51C>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.909+51C>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-172480665-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480665
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480665
    reference: chr 3
allele count: 1
allele frequency: 8.388558006878617e-6
allele num: 119210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.21-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.913-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.913-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1006-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.913-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.910-35A>T
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1006-35A>T
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-172480673-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 172480673
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 172480673
    reference: chr 3
allele count: 1
allele frequency: 8.362322718758362e-6
allele num: 119584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000401910
  ensembl transcript: ENST00000427830
  gene symbol: ECT2
  hgvsc: ENST00000427830.1:c.913-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000415876
  ensembl transcript: ENST00000417960
  gene symbol: ECT2
  hgvsc: ENST00000417960.1:c.910-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000411674
  ensembl transcript: ENST00000444250
  gene symbol: ECT2
  hgvsc: ENST00000444250.1:c.21-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000443160
  ensembl transcript: ENST00000540509
  gene symbol: ECT2
  hgvsc: ENST00000540509.1:c.1006-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000232458
  ensembl transcript: ENST00000232458
  gene symbol: ECT2
  hgvsc: ENST00000232458.5:c.913-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000412259
  ensembl transcript: ENST00000441497
  gene symbol: ECT2
  hgvsc: ENST00000441497.2:c.913-27T>G
  variant of: http://identifiers.org/hgnc/3155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000114346
  ensembl protein: ENSP00000376457
  ensembl transcript: ENST00000392692
  gene symbol: ECT2
  hgvsc: ENST00000392692.3:c.1006-27T>G
  variant of: http://identifiers.org/hgnc/3155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 622
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 267
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.698946653075094e-4
allele num: 5886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 3.77562028047465e-3
allele num: 1854
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 4
allele frequency: 2.677376171352075e-3
allele num: 1494
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 7.8125e-3
allele num: 256
num of homozygotes: 1

Latino
type: Population
allele count: 5
allele frequency: 1.937984496124031e-3
allele num: 2580
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 1.158260503316837e-3
allele num: 18994
num of homozygotes: 5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.038e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

DP
type: SiteQuality
SIO_000300: 1.530061e6

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 487
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 622
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2618
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7422
bin: 6.25e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 7.751937984496124e-4
allele num: 2580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 9.476676845319575e-4
allele num: 18994
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 10
allele frequency: 6.693440428380187e-3
allele num: 1494
num of homozygotes: 4

South Asian
type: Population
allele count: 1
allele frequency: 1.698946653075094e-4
allele num: 5886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 2.157497303128371e-3
allele num: 1854
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.038e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 1.530061e6

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 411
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 622
bin: 3.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.105928187848794e-4
allele num: 18994
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 1.078748651564185e-3
allele num: 1854
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.038e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.530061e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 809
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.579446140886596e-4
allele num: 18994
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.038e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.353e1

MQ
type: SiteQuality
SIO_000300: 5.836e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.530061e6

GenotypeQuality
all individuals: 1024
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.397893306150187e-4
allele num: 5886
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.530061e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.353e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.038e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
all individuals: 614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

MQ
type: SiteQuality
SIO_000300: 5.223e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 1.577057e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.787e1

FS
type: SiteQuality
SIO_000300: 7.911e0

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 2236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.807493146512336e-5
allele num: 52528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

DP
type: SiteQuality
SIO_000300: 1.550491e6

MQ
type: SiteQuality
SIO_000300: 5.458e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 1.6026e1

QD
type: SiteQuality
SIO_000300: 2.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
all individuals: 1727
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 980
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6092
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2507
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2856
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2043
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6406
bin: 6.75e1
variant carriers: 9

South Asian
type: Population
allele count: 38
allele frequency: 2.557200538358008e-3
allele num: 14860
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.323179174743838e-3
allele num: 7222
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.029524000803374e-4
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 28
allele frequency: 4.783054321831227e-3
allele num: 5854
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.840909090909091e-3
allele num: 9152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 157
allele frequency: 2.789127731391011e-3
allele num: 56290
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.089058524173028e-3
allele num: 786
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.422e1

QD
type: SiteQuality
SIO_000300: 2.892e1

DP
type: SiteQuality
SIO_000300: 1.644289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.535e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

GenotypeQuality
all individuals: 6414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6071
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.756111267209891e-5
allele num: 56944
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.677765e6

GenotypeQuality
all individuals: 1114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.998001998001998e-4
allele num: 10010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.727276e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.174e1

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.013171225937183e-4
allele num: 9870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15354
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.727276e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.174e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.679261125104954e-5
allele num: 59550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.067e0

DP
type: SiteQuality
SIO_000300: 1.736867e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.516e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6086
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.960399921584003e-4
allele num: 10202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667444807576869e-5
allele num: 59972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.841e0

MQ
type: SiteQuality
SIO_000300: 5.726e1

DP
type: SiteQuality
SIO_000300: 1.744857e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 1.6773e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.049e1

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6087
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 7306
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.993223041658362e-4
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.306768956053041e-5
allele num: 60482
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.775297996449404e-3
allele num: 7886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.755658e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.464e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 6.439e0

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561670362619858e-5
allele num: 64034
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 7.246e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

DP
type: SiteQuality
SIO_000300: 1.806324e6

MQ
type: SiteQuality
SIO_000300: 5.781e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 2.041e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538224888478696e-5
allele num: 65010
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: -2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.818996e6

GenotypeQuality
all individuals: 2693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 150
allele frequency: 2.274105518496058e-2
allele num: 6596
num of homozygotes: 6

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.829977628635347e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 122
allele frequency: 1.845464996672112e-3
allele num: 66108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.658e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 5.37e0

MQ
type: SiteQuality
SIO_000300: 5.759e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

DP
type: SiteQuality
SIO_000300: 1.841572e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 1.839723e6

QD
type: SiteQuality
SIO_000300: 1.334e1

FS
type: SiteQuality
SIO_000300: 1.0177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.717e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
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variant carriers: 1

GenotypeQuality
all individuals: 822
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variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
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variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 1.839723e6

VQSLOD
type: SiteQuality
SIO_000300: -1.717e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.237e0

FS
type: SiteQuality
SIO_000300: 1.0177e1

QD
type: SiteQuality
SIO_000300: 1.334e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 818
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variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.397e1

FS
type: SiteQuality
SIO_000300: 2.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.842137e6

VQSLOD
type: SiteQuality
SIO_000300: -2.075e0

MQ
type: SiteQuality
SIO_000300: 5.712e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.328e1

MQRankSum
type: SiteQuality
SIO_000300: -1.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

QD
type: SiteQuality
SIO_000300: 1.036e1

FS
type: SiteQuality
SIO_000300: 5.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.843097e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 817
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GenotypeQuality
all individuals: 2578
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.84371e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 5.68e1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.34e-1

FS
type: SiteQuality
SIO_000300: 1.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.227e0

MQ
type: SiteQuality
SIO_000300: 5.701e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 2.155e0

DP
type: SiteQuality
SIO_000300: 1.843856e6

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -2.058e0

QD
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.509650652396128e-5
allele num: 66524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.84428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.646e1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.012e1

VQSLOD
type: SiteQuality
SIO_000300: -3.574e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 1.84175e6

VQSLOD
type: SiteQuality
SIO_000300: -3.54e-1

MQ
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SIO_000300: 5.667e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.631e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8614
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.914e0

MQRankSum
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QD
type: SiteQuality
SIO_000300: 2.125e1

InbreedingCoeff
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SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.126e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.841188e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.848e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.83e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.174e0

DP
type: SiteQuality
SIO_000300: 1.84077e6

FS
type: SiteQuality
SIO_000300: 2.282e0

QD
type: SiteQuality
SIO_000300: 1.341e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 2.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.837788e6

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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SIO_000300: -1.038e0

MQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65596
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 15830
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African
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 1.532050496384361e-5
allele num: 65272
num of homozygotes: 0

Other
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 8.80126738250308e-5
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65008
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179801793298726e-4
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.8e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

DP
type: SiteQuality
SIO_000300: 1.700302e6

FS
type: SiteQuality
SIO_000300: 1.547e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4765
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64532
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.043735949315349e-4
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.649355e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.891e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 7.39e0

FS
type: SiteQuality
SIO_000300: 1.6773e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.539e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

GenotypeQuality
all individuals: 1982
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18162
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.841732979664014e-5
allele num: 11310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.613039e6

QD
type: SiteQuality
SIO_000300: 1.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

FS
type: SiteQuality
SIO_000300: 5.955e0

MQ
type: SiteQuality
SIO_000300: 5.794e1

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.139914594323034e-5
allele num: 63696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.597133e6

QD
type: SiteQuality
SIO_000300: 1.119e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

GenotypeQuality
all individuals: 575
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6076
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4346
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037990450487856e-4
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

FS
type: SiteQuality
SIO_000300: 1.342e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.595073e6

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

GenotypeQuality
all individuals: 2298
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.668564312399929e-4
allele num: 11242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 3.886e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 1.593985e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.449e0

GenotypeQuality
all individuals: 4461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152485735002049e-5
allele num: 63442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 7.58e0

DP
type: SiteQuality
SIO_000300: 1.594957e6

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

QD
type: SiteQuality
SIO_000300: 1.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-4
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.15467364901101e-5
allele num: 63398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.512e0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.594821e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.782e0

GenotypeQuality
all individuals: 2634
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6089
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
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variant carriers: 0

GenotypeQuality
all individuals: 15335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57952930026852e-5
allele num: 63310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

FS
type: SiteQuality
SIO_000300: 3.032e0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

DP
type: SiteQuality
SIO_000300: 1.598697e6

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7292
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22247
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.104625892579944e-5
allele num: 64420
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

DP
type: SiteQuality
SIO_000300: 1.76266e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 1.126e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 2019
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 270
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variant carriers: 1

GenotypeQuality
all individuals: 1094
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7669
bin: 9.75e1
variant carriers: 458

GenotypeQuality
all individuals: 669
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.822046765866991e-3
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.403262585511314e-3
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 377
allele frequency: 5.819697437480704e-3
allele num: 64780
num of homozygotes: 2

South Asian
type: Population
allele count: 53
allele frequency: 3.391782925892743e-3
allele num: 15626
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.156765676567656e-4
allele num: 9696
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.820749e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeQuality
all individuals: 1460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1328
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.055921052631579e-4
allele num: 9728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 4.481e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 1.834713e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65300
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.663e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
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SIO_000300: 1.852576e6

InbreedingCoeff
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SIO_000300: 4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.625e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 9970
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.512584704743466e-5
allele num: 66112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.89738e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

ClippingRankSum
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SIO_000300: -1.067e0

QD
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SIO_000300: 1.057e1

DP
type: SiteQuality
SIO_000300: 1.903173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.784e0

VQSLOD
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SIO_000300: -1.109e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.367e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.904368e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 7291
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variant carriers: 26

Latino
type: Population
allele count: 2
allele frequency: 1.735207357279195e-4
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.040391676866585e-3
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.963271788763153e-4
allele num: 10074
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.905742e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.99e1

FS
type: SiteQuality
SIO_000300: 8.760999999999999e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
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European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.673e1

FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66406
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African
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South Asian
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BaseQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10212
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
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QD
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DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.505072092953252e-5
allele num: 66442
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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African
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South Asian
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VQSLOD
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
allele num: 10214
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European (Non-Finnish)
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Latino
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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Other
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allele frequency: 0.0e0
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South Asian
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ReadPosRankSum
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MQRankSum
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FS
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
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African
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66458
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East Asian
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Other
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.456e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
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South Asian
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allele frequency: 0.0e0
allele num: 16466
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.575e0

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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South Asian
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allele num: 16464
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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Latino
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allele frequency: 3.473428273706148e-4
allele num: 11516
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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MQ
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DP
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

African
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 6.022282445046673e-5
allele num: 66420
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Latino
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num of homozygotes: 0

DP
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 5.923000987166831e-4
allele num: 10130
num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.658574831880824e-4
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European (Finnish)
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Other
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South Asian
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521421616358325e-5
allele num: 65728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.158e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 1.027e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 1.856456e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521977352976988e-5
allele num: 65704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.27e0

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 1.849526e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 4.231e0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.846873e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 2077
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7257
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variant carriers: 1

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.994003597841295e-5
allele num: 10006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

QD
type: SiteQuality
SIO_000300: 1.926e1

VQSLOD
type: SiteQuality
SIO_000300: -2.763e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.368e0

MQRankSum
type: SiteQuality
SIO_000300: -2.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.830553e6

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5825
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variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.187930624851509e-3
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.586174213471122e-5
allele num: 65414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 1.817778e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.6e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5768
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530221882172915e-5
allele num: 65350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.685e0

DP
type: SiteQuality
SIO_000300: 1.813995e6

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.554e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 8.09e0

GenotypeQuality
all individuals: 1445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65342
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.754078231889142e-4
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 2.623e0

DP
type: SiteQuality
SIO_000300: 1.811395e6

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1067
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527463799107961e-5
allele num: 65468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.837807e6

FS
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2