1-24123682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123682
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24123682
    reference: chr 1
allele count: 1
allele frequency: 2.316208829388057e-5
allele num: 43174
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.529-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.529-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.529-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.337-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.647-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.933-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.337-45C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.474-45C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25453
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6361
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

1-24123688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123688
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24123688
    reference: chr 1
allele count: 1
allele frequency: 2.588527645475254e-5
allele num: 38632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.529-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.474-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.529-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.647-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.933-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.337-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.529-51G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.337-51G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26182
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12515
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10713
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7269
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-24124138-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124138
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124137
    reference: chr 1
allele count: 3
allele frequency: 2.49887550602229e-5
allele num: 120054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+46delT
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+46delT
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2437
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genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: GA
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-24124141-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124141
    reference: chr 1
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+44A>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+44A>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27565
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

1-24124141-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124142
    reference: chr 1
allele count: 2
allele frequency: 1.665251203143994e-5
allele num: 120102
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+43dupG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+43dupG
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18495
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-24124146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124146
    reference: chr 1
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+39G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+39G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-24124151-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124151
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124151
    reference: chr 1
allele count: 2
allele frequency: 1.662399840409615e-5
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+34T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+34T>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-24124161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124161
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124161
    reference: chr 1
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+24C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+24C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

1-24124165-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124165
    reference: chr 1
allele count: 1
allele frequency: 8.289124668435012e-6
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+20T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+20T>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-24124168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124168
    reference: chr 1
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+17C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+17C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

1-24124170-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124170
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124170
    reference: chr 1
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+15G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+15G>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

1-24124183-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124183
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124183
    reference: chr 1
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+2T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+2T>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
hgvs: c.528+2T>C
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-24124184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124184
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124184
    reference: chr 1
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.932+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.528+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.646+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.528+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.528+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.336+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.473+1G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.336+1G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
hgvs: c.528+1G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-24124187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124187
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124187
    reference: chr 1
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.471A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.644A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.526A>G
  hgvsp: ENSP00000398257.1:p.Lys176Glu
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.334A>G
  hgvsp: ENSP00000398585.1:p.Lys112Glu
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.334A>G
  hgvsp: ENSP00000414719.1:p.Lys112Glu
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.930A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.526A>G
  hgvsp: ENSP00000393359.1:p.Lys176Glu
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.526A>G
  hgvsp: ENSP00000363621.3:p.Lys176Glu
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.986A>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys176Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-24124195-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124195
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124195
    reference: chr 1
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.922A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.326A>C
  hgvsp: ENSP00000398585.1:p.Gln109Pro
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.518A>C
  hgvsp: ENSP00000393359.1:p.Gln173Pro
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.518A>C
  hgvsp: ENSP00000363621.3:p.Gln173Pro
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.636A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.326A>C
  hgvsp: ENSP00000414719.1:p.Gln109Pro
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.518A>C
  hgvsp: ENSP00000398257.1:p.Gln173Pro
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.978A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.463A>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln173Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-24124196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124196
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124196
    reference: chr 1
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.517C>T
  hgvsp: ENSP00000398257.1:p.Gln173Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.325C>T
  hgvsp: ENSP00000398585.1:p.Gln109Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.325C>T
  hgvsp: ENSP00000414719.1:p.Gln109Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.921C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.517C>T
  hgvsp: ENSP00000363621.3:p.Gln173Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.462C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.517C>T
  hgvsp: ENSP00000393359.1:p.Gln173Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.977C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.635C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln173Ter
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

1-24124207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124207
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124207
    reference: chr 1
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.451G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.624G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.966G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.506G>A
  hgvsp: ENSP00000398257.1:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.314G>A
  hgvsp: ENSP00000414719.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.314G>A
  hgvsp: ENSP00000398585.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.506G>A
  hgvsp: ENSP00000393359.1:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.910G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.506G>A
  hgvsp: ENSP00000363621.3:p.Arg169Gln
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg169Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-24124208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124208
    reference: chr 1
allele count: 11
allele frequency: 9.070219994063128e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.505C>T
  hgvsp: ENSP00000398257.1:p.Arg169Trp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.313C>T
  hgvsp: ENSP00000398585.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.965C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.505C>T
  hgvsp: ENSP00000363621.3:p.Arg169Trp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.909C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.505C>T
  hgvsp: ENSP00000393359.1:p.Arg169Trp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.313C>T
  hgvsp: ENSP00000414719.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.623C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.450C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg169Trp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

1-24124208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124208
    reference: chr 1
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.505C>A
  hgvsp: ENST00000374497.3:c.505C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.965C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.505C>A
  hgvsp: ENST00000425913.1:c.505C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.313C>A
  hgvsp: ENST00000418277.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.505C>A
  hgvsp: ENST00000445705.1:c.505C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.909C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.313C>A
  hgvsp: ENST00000429356.1:c.313C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.623C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.450C>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36501
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg169Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

1-24124220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124220
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124220
    reference: chr 1
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.493G>A
  hgvsp: ENSP00000398257.1:p.Glu165Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.493G>A
  hgvsp: ENSP00000363621.3:p.Glu165Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.897G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.301G>A
  hgvsp: ENSP00000414719.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.953G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.301G>A
  hgvsp: ENSP00000398585.1:p.Glu101Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.493G>A
  hgvsp: ENSP00000393359.1:p.Glu165Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.438G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.611G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu165Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-24124221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124221
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124221
    reference: chr 1
allele count: 12
allele frequency: 9.892501483875222e-5
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.610C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.437C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.492C>T
  hgvsp: ENST00000374497.3:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.896C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.492C>T
  hgvsp: ENST00000425913.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.492C>T
  hgvsp: ENST00000445705.1:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.300C>T
  hgvsp: ENST00000429356.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.300C>T
  hgvsp: ENST00000418277.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.952C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile164Ile
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-24124227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124227
    reference: chr 1
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.486C>T
  hgvsp: ENST00000425913.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.294C>T
  hgvsp: ENST00000429356.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.486C>T
  hgvsp: ENST00000374497.3:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.946C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.431C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.294C>T
  hgvsp: ENST00000418277.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.486C>T
  hgvsp: ENST00000445705.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.604C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.890C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe162Phe
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-24124236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124236
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124236
    reference: chr 1
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.595G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.285G>A
  hgvsp: ENST00000418277.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.477G>A
  hgvsp: ENST00000445705.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.477G>A
  hgvsp: ENST00000425913.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.477G>A
  hgvsp: ENST00000374497.3:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.285G>A
  hgvsp: ENST00000429356.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.937G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.422G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.881G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys159Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

1-24124241-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124241
    reference: chr 1
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.472G>A
  hgvsp: ENSP00000393359.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.280G>A
  hgvsp: ENSP00000398585.1:p.Gly94Ser
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.590G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.472G>A
  hgvsp: ENSP00000398257.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.280G>A
  hgvsp: ENSP00000414719.1:p.Gly94Ser
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.417G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.876G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.472G>A
  hgvsp: ENSP00000363621.3:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.932G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly158Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-24124242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124242
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124242
    reference: chr 1
allele count: 2
allele frequency: 1.64836976230508e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.279C>T
  hgvsp: ENST00000429356.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.279C>T
  hgvsp: ENST00000418277.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.471C>T
  hgvsp: ENST00000445705.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.931C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.416C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.471C>T
  hgvsp: ENST00000425913.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.875C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.589C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.471C>T
  hgvsp: ENST00000374497.3:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36530
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr157Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-24124252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124252
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.269C>T
  hgvsp: ENSP00000414719.1:p.Thr90Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.269C>T
  hgvsp: ENSP00000398585.1:p.Thr90Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.406C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.461C>T
  hgvsp: ENSP00000393359.1:p.Thr154Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.461C>T
  hgvsp: ENSP00000398257.1:p.Thr154Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.921C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.865C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.461C>T
  hgvsp: ENSP00000363621.3:p.Thr154Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.579C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr154Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

1-24124259-CACCCGTGGGGTGGGCCTCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124240
    reference: chr 1
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsp: ENSP00000363621.3:p.Asp145GlufsTer17
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsp: ENSP00000414719.1:p.Asp81GlufsTer17
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsp: ENSP00000398585.1:p.Asp81GlufsTer17
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsp: ENSP00000393359.1:p.Asp145GlufsTer17
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsp: ENSP00000398257.1:p.Asp145GlufsTer17
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp145GlufsTer17
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: CACCCGTGGGGTGGGCCTCA
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-24124263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124263
    reference: chr 1
allele count: 39
allele frequency: 3.214744963566224e-4
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.450G>A
  hgvsp: ENST00000445705.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.450G>A
  hgvsp: ENST00000374497.3:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.854G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.258G>A
  hgvsp: ENST00000418277.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.395G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.450G>A
  hgvsp: ENST00000425913.1:c.450G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.568G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.258G>A
  hgvsp: ENST00000429356.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.910G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8451
  bin: 9.75e1
  variant carriers: 39
hgvs: p.Thr150Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-24124264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124264
    reference: chr 1
allele count: 18
allele frequency: 1.483532786074572e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.449C>T
  hgvsp: ENSP00000398257.1:p.Thr150Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.449C>T
  hgvsp: ENSP00000393359.1:p.Thr150Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.257C>T
  hgvsp: ENSP00000398585.1:p.Thr86Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.853C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.394C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.449C>T
  hgvsp: ENSP00000363621.3:p.Thr150Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.257C>T
  hgvsp: ENSP00000414719.1:p.Thr86Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.909C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.567C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr150Met
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

1-24124266-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124266
    reference: chr 1
allele count: 16
allele frequency: 1.318826244642269e-4
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.447C>G
  hgvsp: ENST00000374497.3:c.447C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.447C>G
  hgvsp: ENST00000425913.1:c.447C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.565C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.907C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.255C>G
  hgvsp: ENST00000429356.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.255C>G
  hgvsp: ENST00000418277.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.392C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.851C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.447C>G
  hgvsp: ENST00000445705.1:c.447C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro149Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-24124269-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124269
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124269
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.848C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.444C>G
  hgvsp: ENSP00000363621.3:p.His148Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.252C>G
  hgvsp: ENSP00000398585.1:p.His84Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.904C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.252C>G
  hgvsp: ENSP00000414719.1:p.His84Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.444C>G
  hgvsp: ENSP00000393359.1:p.His148Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.444C>G
  hgvsp: ENSP00000398257.1:p.His148Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.562C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.389C>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His148Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

1-24124277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124277
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124277
    reference: chr 1
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.896G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.436G>A
  hgvsp: ENSP00000363621.3:p.Glu146Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.244G>A
  hgvsp: ENSP00000414719.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.436G>A
  hgvsp: ENSP00000398257.1:p.Glu146Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.244G>A
  hgvsp: ENSP00000398585.1:p.Glu82Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.840G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.436G>A
  hgvsp: ENSP00000393359.1:p.Glu146Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.381G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.554G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21961
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu146Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-24124283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124283
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124283
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.430C>T
  hgvsp: ENSP00000398257.1:p.Leu144Phe
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.430C>T
  hgvsp: ENSP00000393359.1:p.Leu144Phe
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.375C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.890C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.238C>T
  hgvsp: ENSP00000398585.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.430C>T
  hgvsp: ENSP00000363621.3:p.Leu144Phe
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.548C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.834C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.238C>T
  hgvsp: ENSP00000414719.1:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu144Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

1-24124287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124287
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124287
    reference: chr 1
allele count: 2
allele frequency: 1.648559982854976e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.371G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.234G>A
  hgvsp: ENST00000418277.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.426G>A
  hgvsp: ENST00000425913.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.234G>A
  hgvsp: ENST00000429356.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.830G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.426G>A
  hgvsp: ENST00000445705.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.426G>A
  hgvsp: ENST00000374497.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.544G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.886G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu142Leu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

1-24124290-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124290
    reference: chr 1
allele count: 30
allele frequency: 2.472962279082036e-4
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.883C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.423C>T
  hgvsp: ENST00000445705.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.368C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.231C>T
  hgvsp: ENST00000429356.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.231C>T
  hgvsp: ENST00000418277.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.423C>T
  hgvsp: ENST00000425913.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.827C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.423C>T
  hgvsp: ENST00000374497.3:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.541C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr141Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-24124305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124305
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.408C>T
  hgvsp: ENST00000425913.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.408C>T
  hgvsp: ENST00000445705.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.812C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.868C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.526C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.408C>T
  hgvsp: ENST00000374497.3:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.216C>T
  hgvsp: ENST00000418277.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.353C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.216C>T
  hgvsp: ENST00000429356.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8419
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr136Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-24124305-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124305
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.812C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.408C>A
  hgvsp: ENSP00000393359.1:p.Tyr136Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.868C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.408C>A
  hgvsp: ENSP00000363621.3:p.Tyr136Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.526C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.353C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.216C>A
  hgvsp: ENSP00000414719.1:p.Tyr72Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.216C>A
  hgvsp: ENSP00000398585.1:p.Tyr72Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.408C>A
  hgvsp: ENSP00000398257.1:p.Tyr136Ter
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr136Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-24124331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124331
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124331
    reference: chr 1
allele count: 2
allele frequency: 1.649892756970797e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.190G>A
  hgvsp: ENSP00000398585.1:p.Val64Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.500G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.327G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.786G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.190G>A
  hgvsp: ENSP00000414719.1:p.Val64Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.842G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.382G>A
  hgvsp: ENSP00000393359.1:p.Val128Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.382G>A
  hgvsp: ENSP00000398257.1:p.Val128Met
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.382G>A
  hgvsp: ENSP00000363621.3:p.Val128Met
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val128Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

1-24124334-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124334
    reference: chr 1
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.187C>G
  hgvsp: ENSP00000398585.1:p.Leu63Val
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.497C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.379C>G
  hgvsp: ENSP00000398257.1:p.Leu127Val
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.324C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.379C>G
  hgvsp: ENSP00000393359.1:p.Leu127Val
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.379C>G
  hgvsp: ENSP00000363621.3:p.Leu127Val
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.187C>G
  hgvsp: ENSP00000414719.1:p.Leu63Val
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.783C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.839C>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21979
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu127Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-24124337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124337
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124337
    reference: chr 1
allele count: 50
allele frequency: 4.126297720633139e-4
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.376A>G
  hgvsp: ENSP00000363621.3:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.376A>G
  hgvsp: ENSP00000398257.1:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.780A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.184A>G
  hgvsp: ENSP00000414719.1:p.Asn62Asp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.494A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.321A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.376A>G
  hgvsp: ENSP00000393359.1:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.836A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.184A>G
  hgvsp: ENSP00000398585.1:p.Asn62Asp
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn126Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-24124338-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124338
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124338
    reference: chr 1
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.375G>T
  hgvsp: ENSP00000363621.3:p.Lys125Asn
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.375G>T
  hgvsp: ENSP00000393359.1:p.Lys125Asn
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.835G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.375G>T
  hgvsp: ENSP00000398257.1:p.Lys125Asn
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.183G>T
  hgvsp: ENSP00000398585.1:p.Lys61Asn
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.183G>T
  hgvsp: ENSP00000414719.1:p.Lys61Asn
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.320G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.779G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.493G>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys125Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-24124341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124341
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124341
    reference: chr 1
allele count: 2
allele frequency: 1.651036851142517e-5
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.317G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.180G>A
  hgvsp: ENST00000429356.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.372G>A
  hgvsp: ENST00000374497.3:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.490G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.372G>A
  hgvsp: ENST00000425913.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.776G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.832G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.372G>A
  hgvsp: ENST00000445705.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.180G>A
  hgvsp: ENST00000418277.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val124Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-24124342-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124342
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124341
    reference: chr 1
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.370delG
  hgvsp: ENSP00000363621.3:p.Val124Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.830delG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.370delG
  hgvsp: ENSP00000398257.1:p.Val124Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.315delG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.488delG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.774delG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.178delG
  hgvsp: ENSP00000414719.1:p.Val60Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.178delG
  hgvsp: ENSP00000398585.1:p.Val60Ter
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.370delG
  hgvsp: ENSP00000393359.1:p.Val124Ter
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val124Ter
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: AC
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

1-24124344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124344
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124344
    reference: chr 1
allele count: 56
allele frequency: 4.623742919893654e-4
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.177G>A
  hgvsp: ENST00000429356.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.773G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.177G>A
  hgvsp: ENST00000418277.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.369G>A
  hgvsp: ENST00000445705.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.369G>A
  hgvsp: ENST00000425913.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.314G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.369G>A
  hgvsp: ENST00000374497.3:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.829G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.487G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19568
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21972
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly123Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-24124346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124346
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124346
    reference: chr 1
allele count: 2
allele frequency: 1.651991475723985e-5
allele num: 121066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.367G>A
  hgvsp: ENSP00000393359.1:p.Gly123Arg
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.175G>A
  hgvsp: ENSP00000414719.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.827G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.367G>A
  hgvsp: ENSP00000398257.1:p.Gly123Arg
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.485G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.312G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.175G>A
  hgvsp: ENSP00000398585.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.367G>A
  hgvsp: ENSP00000363621.3:p.Gly123Arg
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.771G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly123Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-24124347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124347
    reference: chr 1
allele count: 13
allele frequency: 1.073776720520699e-4
allele num: 121068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.311C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.366C>T
  hgvsp: ENST00000425913.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.484C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.826C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.366C>T
  hgvsp: ENST00000445705.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.174C>T
  hgvsp: ENST00000418277.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.174C>T
  hgvsp: ENST00000429356.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.770C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.366C>T
  hgvsp: ENST00000374497.3:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His122His
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

1-24124356-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124356
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124356
    reference: chr 1
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.165G>A
  hgvsp: ENSP00000398585.1:p.Met55Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.357G>A
  hgvsp: ENSP00000393359.1:p.Met119Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.357G>A
  hgvsp: ENSP00000398257.1:p.Met119Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.165G>A
  hgvsp: ENSP00000414719.1:p.Met55Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.357G>A
  hgvsp: ENSP00000363621.3:p.Met119Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.302G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.475G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.761G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.817G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met119Ile
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-24124367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124367
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124367
    reference: chr 1
allele count: 2
allele frequency: 1.658787426391308e-5
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.352-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.470-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.812-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.297-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.160-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.352-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.160-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.756-6G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.352-6G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: c.352-6G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

1-24124368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124368
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124368
    reference: chr 1
allele count: 2
allele frequency: 1.659310390601666e-5
allele num: 120532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.297-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.352-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.160-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.812-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.352-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.756-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.160-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.470-7C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.352-7C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8379
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 2.25e1
  variant carriers: 0
hgvs: c.352-7C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-24124407-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124407
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124407
    reference: chr 1
allele count: 1
allele frequency: 8.421194462222522e-6
allele num: 118748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.352-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.470-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.812-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.160-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.160-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.756-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.297-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.352-46G>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.352-46G>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4642
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

1-24124409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124409
    reference: chr 1
allele count: 21
allele frequency: 1.771344703679336e-4
allele num: 118554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.812-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.352-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.352-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.352-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.297-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.160-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.756-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.470-48G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.160-48G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-24124562-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124562
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124562
    reference: chr 1
allele count: 14
allele frequency: 1.155515937866257e-4
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+45C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+45C>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25313
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8183
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-24124565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124565
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124565
    reference: chr 1
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+42C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+42C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

1-24124566-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124566
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124566
    reference: chr 1
allele count: 14
allele frequency: 1.155420573088604e-4
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+41C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+41C>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/1-24124569-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124569
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124569
    reference: chr 1
allele count: 1
allele frequency: 8.25300409349003e-6
allele num: 121168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+38T>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+38T>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-24124572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124572
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124572
    reference: chr 1
allele count: 4
allele frequency: 3.301310620316266e-5
allele num: 121164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+35G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+35G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25480
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-24124575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124575
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124575
    reference: chr 1
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+32G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+32G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

1-24124578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124578
    reference: chr 1
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+29C>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+29C>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

1-24124591-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124591
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124591
    reference: chr 1
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+16C>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+16C>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-24124596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124596
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124596
    reference: chr 1
allele count: 5
allele frequency: 4.125548697976831e-5
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+11T>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+11T>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-24124601-TCTCAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124601
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124596
    reference: chr 1
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.469+1_469+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.351+1_351+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.159+1_159+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.296+1_296+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.351+1_351+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.811+1_811+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.755+1_755+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.159+1_159+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.351+1_351+5delGTGAG
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
hgvs: c.351+1_351+5delGTGAG
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: TCTCAC
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

1-24124609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124609
    reference: chr 1
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.349G>A
  hgvsp: ENSP00000393359.1:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.157G>A
  hgvsp: ENSP00000414719.1:p.Glu53Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.349G>A
  hgvsp: ENSP00000363621.3:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.294G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.753G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.157G>A
  hgvsp: ENSP00000398585.1:p.Glu53Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.809G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.349G>A
  hgvsp: ENSP00000398257.1:p.Glu117Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.467G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu117Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-24124628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124628
    reference: chr 1
allele count: 18
allele frequency: 1.48544266191325e-4
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.330C>T
  hgvsp: ENST00000374497.3:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.448C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.431C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.138C>T
  hgvsp: ENST00000418277.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.275C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.138C>T
  hgvsp: ENST00000429356.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.790C>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.330C>T
  hgvsp: ENST00000425913.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.330C>T
  hgvsp: ENST00000445705.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.734C>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr110Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-24124630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124630
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.429A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.328A>G
  hgvsp: ENSP00000393359.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.732A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.273A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.136A>G
  hgvsp: ENSP00000398585.1:p.Thr46Ala
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.328A>G
  hgvsp: ENSP00000363621.3:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.446A>G
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.136A>G
  hgvsp: ENSP00000414719.1:p.Thr46Ala
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.328A>G
  hgvsp: ENSP00000398257.1:p.Thr110Ala
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.788A>G
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr110Ala
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-24124639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124639
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124639
    reference: chr 1
allele count: 3
allele frequency: 2.476555276713776e-5
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.319G>A
  hgvsp: ENSP00000398257.1:p.Val107Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.437G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.319G>A
  hgvsp: ENSP00000363621.3:p.Val107Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.319G>A
  hgvsp: ENSP00000393359.1:p.Val107Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.127G>A
  hgvsp: ENSP00000414719.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.127G>A
  hgvsp: ENSP00000398585.1:p.Val43Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.723G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.264G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.779G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.420G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8129
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val107Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-24124641-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124641
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124641
    reference: chr 1
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.317G>T
  hgvsp: ENSP00000398257.1:p.Arg106Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.777G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.418G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.262G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.317G>T
  hgvsp: ENSP00000393359.1:p.Arg106Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.125G>T
  hgvsp: ENSP00000414719.1:p.Arg42Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.317G>T
  hgvsp: ENSP00000363621.3:p.Arg106Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.435G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.125G>T
  hgvsp: ENSP00000398585.1:p.Arg42Ile
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.721G>T
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg106Ile
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/1-24124651-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124651
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124651
    reference: chr 1
allele count: 7
allele frequency: 5.783403284973066e-5
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.252G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.307G>T
  hgvsp: ENSP00000393359.1:p.Asp103Tyr
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.307G>T
  hgvsp: ENSP00000363621.3:p.Asp103Tyr
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.711G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.115G>T
  hgvsp: ENSP00000414719.1:p.Asp39Tyr
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.408G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.425G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.767G>T
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.115G>T
  hgvsp: ENSP00000398585.1:p.Asp39Tyr
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.307G>T
  hgvsp: ENSP00000398257.1:p.Asp103Tyr
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp103Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-24124660-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124660
    reference: chr 1
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.298A>C
  hgvsp: ENSP00000393359.1:p.Lys100Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.106A>C
  hgvsp: ENSP00000398585.1:p.Lys36Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.106A>C
  hgvsp: ENSP00000414719.1:p.Lys36Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.702A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.243A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.298A>C
  hgvsp: ENSP00000363621.3:p.Lys100Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.298A>C
  hgvsp: ENSP00000398257.1:p.Lys100Gln
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.758A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.399A>C
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.416A>C
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys100Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

1-24124667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124667
    reference: chr 1
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.236G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.291G>A
  hgvsp: ENST00000374497.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.291G>A
  hgvsp: ENST00000445705.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.99G>A
  hgvsp: ENST00000429356.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.291G>A
  hgvsp: ENST00000425913.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.392G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.409G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.99G>A
  hgvsp: ENST00000418277.1:c.99G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.695G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.751G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8335
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser97Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-24124672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24124672
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 24124672
    reference: chr 1
allele count: 4
allele frequency: 3.314221323699997e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000486382
  gene symbol: GALE
  hgvsc: ENST00000486382.1:n.387G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000414719
  ensembl transcript: ENST00000418277
  gene symbol: GALE
  hgvsc: ENST00000418277.1:c.94G>A
  hgvsp: ENSP00000414719.1:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000459934
  gene symbol: GALE
  hgvsc: ENST00000459934.1:n.404G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000470949
  gene symbol: GALE
  hgvsc: ENST00000470949.1:n.231G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000393359
  ensembl transcript: ENST00000425913
  gene symbol: GALE
  hgvsc: ENST00000425913.1:c.286G>A
  hgvsp: ENSP00000393359.1:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000363621
  ensembl transcript: ENST00000374497
  gene symbol: GALE
  hgvsc: ENST00000374497.3:c.286G>A
  hgvsp: ENSP00000363621.3:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000467493
  gene symbol: GALE
  hgvsc: ENST00000467493.1:n.746G>A
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398257
  ensembl transcript: ENST00000445705
  gene symbol: GALE
  hgvsc: ENST00000445705.1:c.286G>A
  hgvsp: ENSP00000398257.1:p.Glu96Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117308
  ensembl protein: ENSP00000398585
  ensembl transcript: ENST00000429356
  gene symbol: GALE
  hgvsc: ENST00000429356.1:c.94G>A
  hgvsp: ENSP00000398585.1:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/4116
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117308
  ensembl transcript: ENST00000481736
  gene symbol: GALE
  hgvsc: ENST00000481736.1:n.690G>A
  variant of: http://identifiers.org/hgnc/4116
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu96Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 611
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2531
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.320644216691069e-4
allele num: 1366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 7.53349e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

GenotypeQuality
all individuals: 2154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13985
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.107468123861566e-4
allele num: 1098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.54e-2

DP
type: SiteQuality
SIO_000300: 7.45102e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.543251756724013e-5
allele num: 66032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.036e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

DP
type: SiteQuality
SIO_000300: 1.925657e6

GenotypeQuality
all individuals: 2582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513500423780119e-5
allele num: 66072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 1.932042e6

FS
type: SiteQuality
SIO_000300: 2.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.099e0

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8447
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218026796589525e-4
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.932042e6

FS
type: SiteQuality
SIO_000300: 2.501e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.099e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8441
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513637877274241e-5
allele num: 66066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

QD
type: SiteQuality
SIO_000300: 7.99e0

DP
type: SiteQuality
SIO_000300: 1.94853e6

MQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.311e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2511
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216397031991242e-4
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.870000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.966785e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.513e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2532
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.986183e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.535e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7194
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.991281e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.441e0

QD
type: SiteQuality
SIO_000300: 1.25e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

FS
type: SiteQuality
SIO_000300: 2.995e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.546072974644403e-4
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e0

QD
type: SiteQuality
SIO_000300: 1.503e1

DP
type: SiteQuality
SIO_000300: 1.99462e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 6.748e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.177e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2450
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: -5.625e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 1.258e0

DP
type: SiteQuality
SIO_000300: 1.996269e6

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.005619e6

QD
type: SiteQuality
SIO_000300: 1.348e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.698e0

FS
type: SiteQuality
SIO_000300: 6.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.487e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.662e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.161e1

FS
type: SiteQuality
SIO_000300: 3.593e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.704e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 2.006061e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.00712e6

MQ
type: SiteQuality
SIO_000300: 5.903e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 8.121e0

MQRankSum
type: SiteQuality
SIO_000300: -1.566e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.012269e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36501
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GenotypeQuality
all individuals: 7382
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.094357076780758e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499910001799964e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

DP
type: SiteQuality
SIO_000300: 2.012492e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2565
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.012492e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 1.921e0

DP
type: SiteQuality
SIO_000300: 2.013015e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 8449
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649670065986803e-4
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.432e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 2.013411e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.013187e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.883506343713956e-4
allele num: 10404
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10402
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VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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MQ
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FS
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BaseQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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ClippingRankSum
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MQ
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VQSLOD
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DP
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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FS
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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Latino
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European (Non-Finnish)
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South Asian
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FS
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DP
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BaseQRankSum
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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DP
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MQRankSum
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QD
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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Latino
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South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.014279e6

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

BaseQRankSum
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SIO_000300: -3.6e0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.148992322456814e-4
allele num: 66688
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.635041802980734e-4
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.01523e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.446e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.014045e6

FS
type: SiteQuality
SIO_000300: 4.332e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.227e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.227e1

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.332e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 2.014045e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1619
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 2.012026e6

QD
type: SiteQuality
SIO_000300: 1.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.894e0

VQSLOD
type: SiteQuality
SIO_000300: -2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.433e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 1.5791e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: -1.047e0

ReadPosRankSum
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SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.385e0

FS
type: SiteQuality
SIO_000300: 7.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 2.011656e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 50

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.617306520414382e-4
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.75330912146952e-4
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.01267e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.29e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.87e-1

BaseQRankSum
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SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.010922e6

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.523e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
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Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.088e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 4.019e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.153e1

DP
type: SiteQuality
SIO_000300: 2.010316e6

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 2.010594e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
all individuals: 1607
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8439
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variant carriers: 56

GenotypeQuality
all individuals: 789
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.755742381023871e-4
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601908065915004e-4
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.247057395947094e-4
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

DP
type: SiteQuality
SIO_000300: 2.011497e6

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.081e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 2.009396e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.282437188979245e-4
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.153e0

DP
type: SiteQuality
SIO_000300: 2.00923e6

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 1597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
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variant carriers: 0

GenotypeQuality
all individuals: 563
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 8386
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.457e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.364e0

FS
type: SiteQuality
SIO_000300: 2.037e0

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.003372e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

GenotypeQuality
all individuals: 381
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 8381
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2430
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 600
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GenotypeQuality
all individuals: 7015
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 5.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.991235e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2418
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GenotypeQuality
all individuals: 2283
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GenotypeQuality
all individuals: 781
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014227152158187e-5
allele num: 66352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 8.149999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.987817e6

QD
type: SiteQuality
SIO_000300: 1.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

GenotypeQuality
all individuals: 8364
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 272
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GenotypeQuality
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GenotypeQuality
all individuals: 1798
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2029
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variant carriers: 0

GenotypeQuality
all individuals: 14335
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526624328285296e-5
allele num: 65504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.097e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

DP
type: SiteQuality
SIO_000300: 1.802495e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.555e0

GenotypeQuality
all individuals: 4460
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 3622
bin: 2.25e1
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GenotypeQuality
all individuals: 3110
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GenotypeQuality
all individuals: 2015
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variant carriers: 0

GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 2733
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GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 8381
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.878690284487386e-3
allele num: 11178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.799103e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.736e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.499e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.347968419025611e-3
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 1.981e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

DP
type: SiteQuality
SIO_000300: 2.053401e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.053887e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.347968419025611e-3
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 1.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

DP
type: SiteQuality
SIO_000300: 2.053995e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 630
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

DP
type: SiteQuality
SIO_000300: 2.054266e6

VQSLOD
type: SiteQuality
SIO_000300: -2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.288e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.889616644191871e-4
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 2.05485e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 2.055243e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.63e-2

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 2.05778e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8144
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variant carriers: 5

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007629689705926e-5
allele num: 66582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.397e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 2.058316e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.06e1

FS
type: SiteQuality
SIO_000300: 5.123e0

DP
type: SiteQuality
SIO_000300: 2.058425e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 7.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

BaseQRankSum
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SIO_000300: 2.17e0

MQRankSum
type: SiteQuality
SIO_000300: -6.949e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.258e1

FS
type: SiteQuality
SIO_000300: 2.724e0

VQSLOD
type: SiteQuality
SIO_000300: -1.927e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.419e0

DP
type: SiteQuality
SIO_000300: 2.05867e6

MQRankSum
type: SiteQuality
SIO_000300: -1.303e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.802e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
all individuals: 1091
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GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.014964841637118e-5
allele num: 66556
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.640055296353896e-4
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 2.060435e6

QD
type: SiteQuality
SIO_000300: 1.175e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.059071e6

MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.006524157421605e-5
allele num: 66522
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.865e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
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allele num: 904
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
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European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.053518752633797e-4
allele num: 66444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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Other
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

DP
type: SiteQuality
SIO_000300: 2.057158e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

QD
type: SiteQuality
SIO_000300: 1.241e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8122
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37387
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.91e1

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e0

QD
type: SiteQuality
SIO_000300: 1.062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.054331e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 1.292e0

MQRankSum
type: SiteQuality
SIO_000300: -1.394e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

FS
type: SiteQuality
SIO_000300: 1.3642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.721e0

QD
type: SiteQuality
SIO_000300: 1.181e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

DP
type: SiteQuality
SIO_000300: 2.05043e6